HEADER HYDROLASE 05-OCT-21 7VLZ TITLE CRYSTAL STRUCTURE OF THE COLLAGENASE UNIT OF A VIBRIO COLLAGENASE FROM TITLE 2 VIBRIO HARVEYI VHJR7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE P1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PEPTIDE P2; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO HARVEYI VHJR7; SOURCE 3 ORGANISM_TAXID: 1300145; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VIBRIO HARVEYI VHJR7; SOURCE 9 ORGANISM_TAXID: 1300145; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: VIBRIO HARVEYI VHJR7; SOURCE 15 ORGANISM_TAXID: 1300145; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS VIBRIO COLLAGENASE, THE M9A SUBFAMILY, COLLAGENOLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.CAO,Y.WANG,M.PENG,Y.Z.ZHANG REVDAT 3 16-OCT-24 7VLZ 1 REMARK REVDAT 2 29-NOV-23 7VLZ 1 REMARK REVDAT 1 19-OCT-22 7VLZ 0 JRNL AUTH Y.WANG,H.Y.CAO,M.PENG JRNL TITL CRYSTAL STRUCTURE OF THE COLLAGENASE UNIT OF A VIBRIO JRNL TITL 2 COLLAGENASE FROM VIBRIO HARVEYI VHJR7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 85167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8400 - 4.9600 0.96 2811 119 0.1810 0.1888 REMARK 3 2 4.9600 - 3.9400 0.96 2659 156 0.1429 0.1562 REMARK 3 3 3.9400 - 3.4400 0.99 2757 157 0.1478 0.1579 REMARK 3 4 3.4400 - 3.1300 0.99 2744 149 0.1625 0.1906 REMARK 3 5 3.1300 - 2.9000 0.99 2751 155 0.1681 0.1975 REMARK 3 6 2.9000 - 2.7300 0.95 2639 119 0.1695 0.2077 REMARK 3 7 2.7300 - 2.6000 0.99 2730 154 0.1701 0.1973 REMARK 3 8 2.6000 - 2.4800 0.99 2723 147 0.1692 0.1782 REMARK 3 9 2.4800 - 2.3900 0.99 2757 133 0.1625 0.1815 REMARK 3 10 2.3900 - 2.3100 0.99 2721 136 0.1619 0.1847 REMARK 3 11 2.3100 - 2.2300 0.99 2742 150 0.1594 0.1641 REMARK 3 12 2.2300 - 2.1700 0.96 2640 131 0.1629 0.1882 REMARK 3 13 2.1700 - 2.1100 0.97 2654 149 0.1646 0.2017 REMARK 3 14 2.1100 - 2.0600 0.98 2746 119 0.1629 0.1871 REMARK 3 15 2.0600 - 2.0100 0.98 2706 127 0.1662 0.1800 REMARK 3 16 2.0100 - 1.9700 0.99 2732 139 0.1706 0.2078 REMARK 3 17 1.9700 - 1.9300 0.98 2686 153 0.1783 0.1984 REMARK 3 18 1.9300 - 1.9000 0.99 2744 127 0.1749 0.2235 REMARK 3 19 1.9000 - 1.8600 0.98 2664 134 0.1729 0.1730 REMARK 3 20 1.8600 - 1.8300 0.99 2725 148 0.1717 0.1884 REMARK 3 21 1.8300 - 1.8000 0.96 2635 135 0.1752 0.1938 REMARK 3 22 1.8000 - 1.7700 0.97 2643 153 0.1729 0.2218 REMARK 3 23 1.7700 - 1.7500 0.99 2714 133 0.1827 0.2006 REMARK 3 24 1.7500 - 1.7200 0.97 2686 135 0.1798 0.2430 REMARK 3 25 1.7200 - 1.7000 0.99 2676 138 0.1798 0.2213 REMARK 3 26 1.7000 - 1.6800 0.98 2699 164 0.1854 0.2055 REMARK 3 27 1.6800 - 1.6600 0.98 2678 136 0.1799 0.2001 REMARK 3 28 1.6600 - 1.6400 0.99 2725 132 0.1874 0.2184 REMARK 3 29 1.6400 - 1.6200 0.97 2660 133 0.1885 0.2400 REMARK 3 30 1.6200 - 1.6000 0.93 2548 111 0.1830 0.1965 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7ESI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M REMARK 280 IMIDAZOLE/HCL (PH 8.0), AND 10% (W/V) POLYETHYLENE GLYCOL 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.28650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 THR A 12 REMARK 465 PHE A 13 REMARK 465 PHE A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 PRO A 25 REMARK 465 SER A 26 REMARK 465 GLN A 27 REMARK 465 GLN A 28 REMARK 465 VAL A 29 REMARK 465 THR A 30 REMARK 465 GLU A 31 REMARK 465 ILE A 32 REMARK 465 TYR A 33 REMARK 465 GLN A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 ALA A 37 REMARK 465 HIS A 38 REMARK 465 GLN A 39 REMARK 465 ASN A 40 REMARK 465 GLY A 41 REMARK 465 ASN A 42 REMARK 465 ASP A 43 REMARK 465 ARG A 44 REMARK 465 ALA A 45 REMARK 465 LEU A 46 REMARK 465 PRO A 47 REMARK 465 ASP A 48 REMARK 465 TYR A 49 REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 THR A 52 REMARK 465 LYS A 53 REMARK 465 LEU A 54 REMARK 465 LEU A 55 REMARK 465 PRO A 56 REMARK 465 GLN A 57 REMARK 465 GLN A 58 REMARK 465 PRO A 59 REMARK 465 LYS A 60 REMARK 465 PRO A 61 REMARK 465 THR A 62 REMARK 465 LEU A 63 REMARK 465 ARG A 64 REMARK 465 THR A 65 REMARK 465 LEU A 66 REMARK 465 SER A 67 REMARK 465 THR A 68 REMARK 465 ARG A 69 REMARK 465 SER A 70 REMARK 465 ALA A 71 REMARK 465 GLU A 72 REMARK 465 GLN A 73 REMARK 465 ALA A 74 REMARK 465 ALA A 75 REMARK 465 ASN A 76 REMARK 465 VAL A 77 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 HIS A 613 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 376 77.13 -160.83 REMARK 500 GLU A 514 -122.15 50.03 REMARK 500 ASN A 517 78.19 -153.44 REMARK 500 PHE A 543 59.90 37.67 REMARK 500 HIS A 563 49.95 -148.91 REMARK 500 TYR B 10 72.54 -100.04 REMARK 500 LYS C 6 -114.44 -90.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1669 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1670 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 376 O REMARK 620 2 ASP A 421 OD1 88.6 REMARK 620 3 GLU A 462 OE1 103.6 127.1 REMARK 620 4 GLU A 462 OE2 80.2 80.8 52.2 REMARK 620 5 HOH A 997 O 82.1 155.5 77.3 119.5 REMARK 620 6 HOH A1216 O 163.5 77.7 78.2 88.4 114.1 REMARK 620 7 HOH A1384 O 98.5 83.6 141.8 164.4 75.4 89.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 446 OE2 REMARK 620 2 GLY A 485 O 85.1 REMARK 620 3 LEU A 489 O 162.5 83.8 REMARK 620 4 GLY A 491 O 87.7 171.4 104.2 REMARK 620 5 HOH A1075 O 96.0 89.2 97.4 86.9 REMARK 620 6 HOH A1155 O 79.3 97.5 88.6 85.8 171.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 477 NE2 REMARK 620 2 HIS A 481 NE2 104.3 REMARK 620 3 GLU A 505 OE2 98.4 108.6 REMARK 620 4 HIS B 13 NE2 106.4 111.0 125.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 523 O REMARK 620 2 THR A 523 OG1 71.3 REMARK 620 3 ASP A 526 OD1 73.4 126.7 REMARK 620 4 ASP A 526 OD2 87.3 87.0 52.6 REMARK 620 5 SER A 528 O 73.6 120.7 84.6 136.9 REMARK 620 6 SER A 528 OG 137.4 150.8 76.7 98.2 73.9 REMARK 620 7 HOH A 884 O 114.4 76.9 155.5 146.2 76.2 83.4 REMARK 620 8 HOH A1316 O 145.1 79.7 111.6 72.0 139.9 74.7 76.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 529 O REMARK 620 2 HOH A 907 O 77.7 REMARK 620 3 HOH A1246 O 94.1 78.0 REMARK 620 4 HOH A1289 O 84.5 124.7 156.0 REMARK 620 5 HOH A1333 O 77.4 145.0 79.7 76.6 REMARK 620 6 HOH A1609 O 141.3 74.2 105.3 90.2 138.3 REMARK 620 7 HOH A1643 O 154.2 126.4 83.6 87.4 76.9 62.9 REMARK 620 N 1 2 3 4 5 6 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE REFERENCE SEQUENCE OF CHAIN A IS GENBANK WP_047516938. DBREF 7VLZ A 1 613 PDB 7VLZ 7VLZ 1 613 DBREF 7VLZ B 1 14 PDB 7VLZ 7VLZ 1 14 DBREF 7VLZ C 1 12 PDB 7VLZ 7VLZ 1 12 SEQRES 1 A 613 MET GLU LEU LYS ASN LEU THR VAL ALA ILE ALA THR PHE SEQRES 2 A 613 PHE ALA SER THR ASN ALA LEU ALA LEU SER GLU PRO SER SEQRES 3 A 613 GLN GLN VAL THR GLU ILE TYR GLN HIS HIS ALA HIS GLN SEQRES 4 A 613 ASN GLY ASN ASP ARG ALA LEU PRO ASP TYR ALA PRO THR SEQRES 5 A 613 LYS LEU LEU PRO GLN GLN PRO LYS PRO THR LEU ARG THR SEQRES 6 A 613 LEU SER THR ARG SER ALA GLU GLN ALA ALA ASN VAL CYS SEQRES 7 A 613 ASP VAL GLU ALA PHE THR SER ASN SER SER ASN ASP VAL SEQRES 8 A 613 LEU ASN ALA ILE LYS THR GLN GLY ALA SER CYS VAL ASN SEQRES 9 A 613 ALA LEU PHE SER ALA GLU SER ARG ILE GLN GLU ALA ALA SEQRES 10 A 613 PHE GLU SER GLY HIS MET TYR ASN ILE ALA LYS HIS THR SEQRES 11 A 613 THR ASP LEU ALA LYS ALA TYR ALA GLY GLY GLY SER ASP SEQRES 12 A 613 GLU LEU GLU ALA LEU PHE LEU TYR LEU ARG ALA GLY TYR SEQRES 13 A 613 TYR ALA GLU PHE TYR ASN SER LYS VAL SER PHE LEU SER SEQRES 14 A 613 TRP VAL THR PRO ALA VAL LYS GLU ALA VAL ASP ALA PHE SEQRES 15 A 613 VAL ASN ASN ALA ASN PHE TYR GLU ASN SER ASP PRO HIS SEQRES 16 A 613 GLY LYS VAL LEU SER GLU VAL ILE ILE THR MET ASP SER SEQRES 17 A 613 ALA GLY LEU GLN HIS ALA TYR LEU PRO GLN VAL THR GLN SEQRES 18 A 613 TRP LEU THR ARG TRP ASP SER GLN TYR ALA GLN ASN TRP SEQRES 19 A 613 TYR MET ARG ASN ALA VAL ASN GLY VAL PHE THR ILE LEU SEQRES 20 A 613 PHE GLY GLY GLN TRP ASN GLU GLN PHE VAL GLN THR ILE SEQRES 21 A 613 GLY ASN GLN THR GLU LEU ALA LYS ALA LEU GLY ASP PHE SEQRES 22 A 613 ALA LEU ARG SER SER ALA ILE GLY ALA SER ASP GLU PHE SEQRES 23 A 613 MET ALA ALA ASN ALA GLY ARG GLU LEU GLY ARG LEU THR SEQRES 24 A 613 LYS TYR SER GLY SER ALA SER SER THR VAL LYS SER LYS SEQRES 25 A 613 LEU THR GLU ILE PHE ALA GLN TYR GLU MET TYR GLY ARG SEQRES 26 A 613 GLY ASP ALA ILE TRP LEU GLY ALA ALA ASP THR VAL SER SEQRES 27 A 613 TYR TYR ALA ASP CYS SER ASP TYR GLY ILE CYS ASN PHE SEQRES 28 A 613 GLU SER GLN LEU LYS GLY LEU VAL LEU SER GLN SER TYR SEQRES 29 A 613 THR CYS SER PRO THR ILE ARG ILE LEU SER GLN ASN MET SEQRES 30 A 613 THR GLN ASP GLN HIS VAL ALA ALA CYS SER LYS MET GLY SEQRES 31 A 613 TYR GLU GLU GLY TYR PHE HIS THR SER LEU GLU THR GLY SEQRES 32 A 613 ARG GLN PRO VAL ALA ASP ASP TYR ASN THR GLN LEU GLN SEQRES 33 A 613 VAL ASN ILE PHE ASP SER SER ASP ASP TYR GLY LYS TYR SEQRES 34 A 613 ALA GLY PRO ILE PHE ASN ILE SER THR ASN ASN GLY GLY SEQRES 35 A 613 MET TYR LEU GLU GLY ASP PRO ALA THR PRO GLY ASN ILE SEQRES 36 A 613 PRO ASN PHE VAL ALA TYR GLU ALA PRO TYR ALA ASN PRO SEQRES 37 A 613 ASP HIS PHE VAL TRP ASN LEU GLU HIS GLU TYR VAL HIS SEQRES 38 A 613 TYR LEU ASP GLY ARG PHE ASP LEU TYR GLY GLY PHE GLY SEQRES 39 A 613 HIS PRO THR GLU ARG ILE VAL TRP TRP SER GLU GLY ILE SEQRES 40 A 613 ALA GLU TYR VAL SER LYS GLU ASN ASP ASN GLN ALA ALA SEQRES 41 A 613 ILE ASP THR ILE LYS ASP GLY SER THR PHE THR LEU SER SEQRES 42 A 613 GLU ILE PHE GLU THR SER TYR ASP GLY PHE ASP VAL ASP SEQRES 43 A 613 ARG ILE TYR ARG TRP GLY TYR LEU ALA VAL ARG PHE MET SEQRES 44 A 613 PHE GLU ARG HIS LYS ASP ASP VAL ASN GLN MET LEU ILE SEQRES 45 A 613 GLU THR ARG GLN GLY ASN TRP ALA ASN TYR LYS ALA THR SEQRES 46 A 613 ILE ASN GLN TRP ALA ILE LEU TYR GLN SER GLU PHE GLU SEQRES 47 A 613 GLN TRP GLN GLN ALA LEU VAL LEU GLU HIS HIS HIS HIS SEQRES 48 A 613 HIS HIS SEQRES 1 B 14 GLU PRO SER GLN GLN VAL THR GLU ILE TYR GLN HIS HIS SEQRES 2 B 14 ALA SEQRES 1 C 12 ASP TYR ALA PRO THR LYS LEU LEU PRO GLN GLN PRO HET ZN A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET CA A 705 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 4 ZN ZN 2+ FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *915(H2 O) HELIX 1 AA1 ASP A 79 SER A 85 5 7 HELIX 2 AA2 SER A 87 GLY A 99 1 13 HELIX 3 AA3 GLY A 99 ASN A 104 1 6 HELIX 4 AA4 ALA A 105 SER A 108 5 4 HELIX 5 AA5 GLU A 110 PHE A 118 1 9 HELIX 6 AA6 GLU A 119 TYR A 137 1 19 HELIX 7 AA7 SER A 142 ASN A 162 1 21 HELIX 8 AA8 TRP A 170 ASN A 184 1 15 HELIX 9 AA9 SER A 192 ALA A 209 1 18 HELIX 10 AB1 TYR A 215 TRP A 226 1 12 HELIX 11 AB2 GLN A 229 GLN A 232 5 4 HELIX 12 AB3 ASN A 233 GLY A 250 1 18 HELIX 13 AB4 ASN A 253 ILE A 260 1 8 HELIX 14 AB5 GLN A 263 LEU A 275 1 13 HELIX 15 AB6 ARG A 276 ILE A 280 5 5 HELIX 16 AB7 ASP A 284 LEU A 298 1 15 HELIX 17 AB8 THR A 299 TYR A 301 5 3 HELIX 18 AB9 ALA A 305 TYR A 320 1 16 HELIX 19 AC1 GLY A 326 ALA A 341 1 16 HELIX 20 AC2 ASP A 342 TYR A 346 5 5 HELIX 21 AC3 ASN A 350 LEU A 360 1 11 HELIX 22 AC4 THR A 378 GLU A 401 1 24 HELIX 23 AC5 SER A 422 ASN A 435 1 14 HELIX 24 AC6 ASN A 474 ASP A 488 1 15 HELIX 25 AC7 ILE A 500 GLU A 514 1 15 HELIX 26 AC8 ASN A 517 LYS A 525 1 9 HELIX 27 AC9 THR A 531 GLU A 537 1 7 HELIX 28 AD1 ASP A 544 HIS A 563 1 20 HELIX 29 AD2 HIS A 563 GLN A 576 1 14 HELIX 30 AD3 ASN A 578 TYR A 593 1 16 HELIX 31 AD4 TYR A 593 HIS A 609 1 17 SHEET 1 AA1 5 GLN A 362 SER A 367 0 SHEET 2 AA1 5 ILE A 370 SER A 374 -1 O ILE A 372 N TYR A 364 SHEET 3 AA1 5 LEU A 415 PHE A 420 1 O VAL A 417 N ARG A 371 SHEET 4 AA1 5 ASN A 457 TYR A 461 1 O PHE A 458 N ASN A 418 SHEET 5 AA1 5 MET A 443 LEU A 445 -1 N LEU A 445 O ASN A 457 SSBOND 1 CYS A 78 CYS A 102 1555 1555 2.01 SSBOND 2 CYS A 343 CYS A 349 1555 1555 2.05 SSBOND 3 CYS A 366 CYS A 386 1555 1555 2.03 LINK O ASN A 376 CA CA A 703 1555 1555 2.34 LINK OD1 ASP A 421 CA CA A 703 1555 1555 2.34 LINK OE2 GLU A 446 CA CA A 702 1555 1555 2.38 LINK OE1 GLU A 462 CA CA A 703 1555 1555 2.45 LINK OE2 GLU A 462 CA CA A 703 1555 1555 2.52 LINK NE2 HIS A 477 ZN ZN A 701 1555 1555 1.99 LINK NE2 HIS A 481 ZN ZN A 701 1555 1555 2.03 LINK O GLY A 485 CA CA A 702 1555 1555 2.31 LINK O LEU A 489 CA CA A 702 1555 1555 2.31 LINK O GLY A 491 CA CA A 702 1555 1555 2.31 LINK OE2 GLU A 505 ZN ZN A 701 1555 1555 1.94 LINK O THR A 523 CA CA A 705 1555 1555 2.48 LINK OG1 THR A 523 CA CA A 705 1555 1555 2.43 LINK OD1 ASP A 526 CA CA A 705 1555 1555 2.34 LINK OD2 ASP A 526 CA CA A 705 1555 1555 2.56 LINK O SER A 528 CA CA A 705 1555 1555 2.40 LINK OG SER A 528 CA CA A 705 1555 1555 2.58 LINK O THR A 529 CA CA A 704 1555 1555 2.43 LINK ZN ZN A 701 NE2 HIS B 13 1555 1555 2.01 LINK CA CA A 702 O HOH A1075 1555 1555 2.32 LINK CA CA A 702 O HOH A1155 1555 1555 2.35 LINK CA CA A 703 O HOH A 997 1555 1555 2.46 LINK CA CA A 703 O HOH A1216 1555 1555 2.34 LINK CA CA A 703 O HOH A1384 1555 1555 2.42 LINK CA CA A 704 O HOH A 907 1555 1555 2.39 LINK CA CA A 704 O HOH A1246 1555 1555 2.43 LINK CA CA A 704 O HOH A1289 1555 1555 2.53 LINK CA CA A 704 O HOH A1333 1555 1555 2.43 LINK CA CA A 704 O HOH A1609 1555 1555 2.30 LINK CA CA A 704 O HOH A1643 1555 1555 2.41 LINK CA CA A 705 O HOH A 884 1555 1555 2.37 LINK CA CA A 705 O HOH A1316 1555 1555 2.56 CISPEP 1 PRO A 468 ASP A 469 0 5.35 CRYST1 74.641 50.573 90.968 90.00 104.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013397 0.000000 0.003585 0.00000 SCALE2 0.000000 0.019773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011380 0.00000 CONECT 6 177 CONECT 177 6 CONECT 2060 2104 CONECT 2104 2060 CONECT 2237 2389 CONECT 2311 4449 CONECT 2389 2237 CONECT 2673 4449 CONECT 2864 4448 CONECT 2980 4449 CONECT 2981 4449 CONECT 3110 4447 CONECT 3148 4447 CONECT 3180 4448 CONECT 3214 4448 CONECT 3234 4448 CONECT 3355 4447 CONECT 3487 4451 CONECT 3489 4451 CONECT 3514 4451 CONECT 3515 4451 CONECT 3523 4451 CONECT 3525 4451 CONECT 3529 4450 CONECT 4343 4447 CONECT 4447 3110 3148 3355 4343 CONECT 4448 2864 3180 3214 3234 CONECT 4448 4726 4806 CONECT 4449 2311 2673 2980 2981 CONECT 4449 4648 4867 5035 CONECT 4450 3529 4558 4897 4940 CONECT 4450 4984 5260 5294 CONECT 4451 3487 3489 3514 3515 CONECT 4451 3523 3525 4535 4967 CONECT 4535 4451 CONECT 4558 4450 CONECT 4648 4449 CONECT 4726 4448 CONECT 4806 4448 CONECT 4867 4449 CONECT 4897 4450 CONECT 4940 4450 CONECT 4967 4451 CONECT 4984 4450 CONECT 5035 4449 CONECT 5260 4450 CONECT 5294 4450 MASTER 404 0 5 31 5 0 0 6 5363 3 47 51 END