HEADER TRANSCRIPTION 10-OCT-21 7VN2 TITLE CRYSTAL STRUCTURE OF MBP-FUSED BIL1/BZR1 (21-90) IN COMPLEX WITH TITLE 2 DOUBLE-STRANDED DNA CONTANING ATCACGTGAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN,PROTEIN BRASSINAZOLE-RESISTANT COMPND 3 1; COMPND 4 CHAIN: C, A; COMPND 5 SYNONYM: PROTEIN BIN2 SUBSTRATE 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*TP*AP*TP*CP*AP*CP*GP*TP*GP*AP*TP*AP*AP*A)- COMPND 10 3'); COMPND 11 CHAIN: G, E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA SP. (STRAIN FS14), ARABIDOPSIS SOURCE 3 THALIANA; SOURCE 4 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 5 ORGANISM_TAXID: 1327989, 3702; SOURCE 6 STRAIN: FS14; SOURCE 7 GENE: MALE, JW3994, BZR1, BIS2, AT1G75080, F9E10_7; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR-DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.NOSAKI,M.TANOKURA,T.MIYAKAWA REVDAT 4 29-NOV-23 7VN2 1 REMARK REVDAT 3 11-JAN-23 7VN2 1 JRNL REVDAT 2 28-DEC-22 7VN2 1 JRNL REVDAT 1 07-DEC-22 7VN2 0 JRNL AUTH S.NOSAKI,N.MITSUDA,S.SAKAMOTO,K.KUSUBAYASHI,A.YAMAGAMI,Y.XU, JRNL AUTH 2 T.B.C.BUI,T.TERADA,K.MIURA,T.NAKANO,M.TANOKURA,T.MIYAKAWA JRNL TITL BRASSINOSTEROID-INDUCED GENE REPRESSION REQUIRES SPECIFIC JRNL TITL 2 AND TIGHT PROMOTER BINDING OF BIL1/BZR1 VIA DNA SHAPE JRNL TITL 3 READOUT. JRNL REF NAT.PLANTS V. 8 1440 2022 JRNL REFN ESSN 2055-0278 JRNL PMID 36522451 JRNL DOI 10.1038/S41477-022-01289-6 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 39808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8700 - 5.8200 0.96 2689 133 0.1695 0.1886 REMARK 3 2 5.8200 - 4.6300 0.98 2677 141 0.1774 0.1949 REMARK 3 3 4.6300 - 4.0400 0.98 2688 125 0.1794 0.1956 REMARK 3 4 4.0400 - 3.6700 0.99 2723 129 0.2057 0.2406 REMARK 3 5 3.6700 - 3.4100 0.99 2702 133 0.2407 0.2507 REMARK 3 6 3.4100 - 3.2100 0.99 2716 128 0.2438 0.2954 REMARK 3 7 3.2100 - 3.0500 1.00 2686 156 0.2631 0.3152 REMARK 3 8 3.0500 - 2.9200 1.00 2680 166 0.2812 0.2993 REMARK 3 9 2.9200 - 2.8000 1.00 2751 131 0.2932 0.2999 REMARK 3 10 2.8000 - 2.7100 1.00 2698 150 0.2794 0.3066 REMARK 3 11 2.7100 - 2.6200 1.00 2634 169 0.2773 0.2882 REMARK 3 12 2.6200 - 2.5500 1.00 2722 166 0.2898 0.3132 REMARK 3 13 2.5500 - 2.4800 1.00 2711 136 0.2993 0.3462 REMARK 3 14 2.4800 - 2.4200 1.00 2734 134 0.3062 0.3460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.341 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.813 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 7698 REMARK 3 ANGLE : 1.008 10566 REMARK 3 CHIRALITY : 0.085 1153 REMARK 3 PLANARITY : 0.006 1263 REMARK 3 DIHEDRAL : 24.983 2878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -348 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9451 -13.7788 -0.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.2383 REMARK 3 T33: 0.3751 T12: -0.0258 REMARK 3 T13: 0.0007 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 2.9683 L22: 1.5049 REMARK 3 L33: 3.8076 L12: 0.0529 REMARK 3 L13: -0.3494 L23: 0.4312 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.1918 S13: -0.3192 REMARK 3 S21: 0.0240 S22: -0.0065 S23: 0.0167 REMARK 3 S31: 0.0759 S32: 0.1903 S33: -0.0303 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 27 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4398 37.6103 -1.9518 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.2338 REMARK 3 T33: 0.6182 T12: 0.0274 REMARK 3 T13: -0.0721 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.2754 L22: 3.8665 REMARK 3 L33: 2.2004 L12: 0.7608 REMARK 3 L13: 0.0468 L23: 0.7127 REMARK 3 S TENSOR REMARK 3 S11: -0.2703 S12: -0.0556 S13: 0.9635 REMARK 3 S21: 0.0241 S22: 0.1654 S23: 0.0384 REMARK 3 S31: -0.3087 S32: 0.2171 S33: 0.1118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'G' AND (RESID -3 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0368 24.5901 -1.2405 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2667 REMARK 3 T33: 0.4164 T12: -0.0171 REMARK 3 T13: -0.0073 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 4.4334 L22: 0.5137 REMARK 3 L33: 0.5652 L12: 1.5100 REMARK 3 L13: 1.2340 L23: 0.5520 REMARK 3 S TENSOR REMARK 3 S11: -0.5090 S12: 0.6116 S13: 0.2594 REMARK 3 S21: -0.0476 S22: 0.3091 S23: -0.0352 REMARK 3 S31: -0.0123 S32: -0.0145 S33: 0.1618 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -347 THROUGH -266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5488 12.2553 31.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.3275 T22: 0.9029 REMARK 3 T33: 0.4123 T12: 0.0963 REMARK 3 T13: 0.0338 T23: -0.2206 REMARK 3 L TENSOR REMARK 3 L11: 2.1358 L22: 2.9294 REMARK 3 L33: 3.0695 L12: -0.4922 REMARK 3 L13: 0.2908 L23: -0.0619 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.8856 S13: 0.1749 REMARK 3 S21: -0.2791 S22: -0.1434 S23: 0.3979 REMARK 3 S31: 0.0518 S32: -1.2107 S33: 0.1681 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -265 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3696 15.3188 51.6237 REMARK 3 T TENSOR REMARK 3 T11: 0.3260 T22: 1.3119 REMARK 3 T33: 0.4340 T12: 0.0175 REMARK 3 T13: 0.0455 T23: -0.3058 REMARK 3 L TENSOR REMARK 3 L11: 1.9736 L22: 1.1743 REMARK 3 L33: 4.4937 L12: 0.8441 REMARK 3 L13: 0.2074 L23: 1.3465 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -1.2344 S13: 0.2835 REMARK 3 S21: 0.2548 S22: -0.6406 S23: 0.0487 REMARK 3 S31: 0.1108 S32: -1.1343 S33: 0.4113 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1690 -28.7576 50.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.4637 T22: 0.7571 REMARK 3 T33: 0.8609 T12: 0.0930 REMARK 3 T13: -0.1172 T23: 0.0805 REMARK 3 L TENSOR REMARK 3 L11: 1.4633 L22: 4.0614 REMARK 3 L33: 2.9370 L12: 1.8810 REMARK 3 L13: -0.6174 L23: 0.5579 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: 0.3016 S13: -0.2860 REMARK 3 S21: -0.1982 S22: 0.2805 S23: 0.3951 REMARK 3 S31: -0.1350 S32: 0.0143 S33: -0.1633 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID -3 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8293 -23.3387 51.4814 REMARK 3 T TENSOR REMARK 3 T11: 0.4893 T22: 1.3214 REMARK 3 T33: 0.9073 T12: -0.0139 REMARK 3 T13: -0.0740 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 5.0880 L22: 1.0041 REMARK 3 L33: 0.6679 L12: -2.2934 REMARK 3 L13: 1.2550 L23: -0.4428 REMARK 3 S TENSOR REMARK 3 S11: -0.3131 S12: 0.1923 S13: 0.9184 REMARK 3 S21: -0.0102 S22: -0.3083 S23: -0.1378 REMARK 3 S31: -0.2819 S32: 0.0545 S33: 0.6136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 45.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZD4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE PH 6.5, 200 MM REMARK 280 POTASSIUM CHLORIDE, 10 MM MAGNESIUM CHLORIDE AND 10% (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.29800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.10300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.29800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.10300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -18.80802 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 100.59689 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 89 REMARK 465 GLY C 90 REMARK 465 MET A -348 REMARK 465 LYS A 89 REMARK 465 GLY A 90 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A-190 CB TRP A-190 CG -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 60 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 DA E 11 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C-180 -72.03 -87.20 REMARK 500 ASP C -52 -73.32 -73.30 REMARK 500 ILE A-240 -54.88 -120.55 REMARK 500 PRO A-194 -12.82 -49.85 REMARK 500 TYR A -65 -49.72 -131.02 REMARK 500 ASN A 58 -9.88 -44.36 REMARK 500 ASP A 83 57.73 -96.72 REMARK 500 THR A 85 70.00 56.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZD4 RELATED DB: PDB DBREF1 7VN2 C -347 20 UNP A0A4P1LXE0_SERSF DBREF2 7VN2 C A0A4P1LXE0 3 370 DBREF 7VN2 C 21 90 UNP Q8S307 BZR1_ARATH 21 90 DBREF 7VN2 G -3 11 PDB 7VN2 7VN2 -3 11 DBREF1 7VN2 A -347 20 UNP A0A4P1LXE0_SERSF DBREF2 7VN2 A A0A4P1LXE0 3 370 DBREF 7VN2 A 21 90 UNP Q8S307 BZR1_ARATH 21 90 DBREF 7VN2 E -3 11 PDB 7VN2 7VN2 -3 11 SEQADV 7VN2 MET C -348 UNP A0A4P1LXE INITIATING METHIONINE SEQADV 7VN2 ALA C -266 UNP A0A4P1LXE ASP 84 ENGINEERED MUTATION SEQADV 7VN2 ALA C -265 UNP A0A4P1LXE LYS 85 ENGINEERED MUTATION SEQADV 7VN2 ALA C -176 UNP A0A4P1LXE GLU 174 ENGINEERED MUTATION SEQADV 7VN2 ALA C -175 UNP A0A4P1LXE ASN 175 ENGINEERED MUTATION SEQADV 7VN2 ALA C -109 UNP A0A4P1LXE LYS 241 ENGINEERED MUTATION SEQADV 7VN2 ALA C 11 UNP A0A4P1LXE GLU 361 ENGINEERED MUTATION SEQADV 7VN2 ALA C 14 UNP A0A4P1LXE LYS 364 ENGINEERED MUTATION SEQADV 7VN2 ALA C 15 UNP A0A4P1LXE ASP 365 ENGINEERED MUTATION SEQADV 7VN2 MET A -348 UNP A0A4P1LXE INITIATING METHIONINE SEQADV 7VN2 ALA A -266 UNP A0A4P1LXE ASP 84 ENGINEERED MUTATION SEQADV 7VN2 ALA A -265 UNP A0A4P1LXE LYS 85 ENGINEERED MUTATION SEQADV 7VN2 ALA A -176 UNP A0A4P1LXE GLU 174 ENGINEERED MUTATION SEQADV 7VN2 ALA A -175 UNP A0A4P1LXE ASN 175 ENGINEERED MUTATION SEQADV 7VN2 ALA A -109 UNP A0A4P1LXE LYS 241 ENGINEERED MUTATION SEQADV 7VN2 ALA A 11 UNP A0A4P1LXE GLU 361 ENGINEERED MUTATION SEQADV 7VN2 ALA A 14 UNP A0A4P1LXE LYS 364 ENGINEERED MUTATION SEQADV 7VN2 ALA A 15 UNP A0A4P1LXE ASP 365 ENGINEERED MUTATION SEQRES 1 C 439 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 C 439 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 C 439 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 C 439 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 C 439 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 C 439 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 C 439 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 C 439 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 C 439 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 C 439 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 C 439 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 C 439 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 C 439 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 C 439 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 C 439 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 C 439 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 C 439 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 C 439 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 C 439 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 C 439 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 C 439 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 C 439 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 C 439 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 C 439 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 C 439 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 C 439 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 C 439 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 C 439 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 C 439 ALA GLN THR ASN ALA ALA ARG ARG LYS PRO SER TRP ARG SEQRES 30 C 439 GLU ARG GLU ASN ASN ARG ARG ARG GLU ARG ARG ARG ARG SEQRES 31 C 439 ALA VAL ALA ALA LYS ILE TYR THR GLY LEU ARG ALA GLN SEQRES 32 C 439 GLY ASP TYR ASN LEU PRO LYS HIS CYS ASP ASN ASN GLU SEQRES 33 C 439 VAL LEU LYS ALA LEU CYS VAL GLU ALA GLY TRP VAL VAL SEQRES 34 C 439 GLU GLU ASP GLY THR THR TYR ARG LYS GLY SEQRES 1 G 15 DT DT DA DT DC DA DC DG DT DG DA DT DA SEQRES 2 G 15 DA DA SEQRES 1 A 439 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 439 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 439 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 439 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 439 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 439 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 439 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 439 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 439 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 439 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 439 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 439 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 439 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 439 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 439 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 439 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 439 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 439 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 439 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 439 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 439 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 439 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 439 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 439 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 439 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 439 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 439 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 439 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 439 ALA GLN THR ASN ALA ALA ARG ARG LYS PRO SER TRP ARG SEQRES 30 A 439 GLU ARG GLU ASN ASN ARG ARG ARG GLU ARG ARG ARG ARG SEQRES 31 A 439 ALA VAL ALA ALA LYS ILE TYR THR GLY LEU ARG ALA GLN SEQRES 32 A 439 GLY ASP TYR ASN LEU PRO LYS HIS CYS ASP ASN ASN GLU SEQRES 33 A 439 VAL LEU LYS ALA LEU CYS VAL GLU ALA GLY TRP VAL VAL SEQRES 34 A 439 GLU GLU ASP GLY THR THR TYR ARG LYS GLY SEQRES 1 E 15 DT DT DA DT DC DA DC DG DT DG DA DT DA SEQRES 2 E 15 DA DA HET GLC D 1 12 HET GLC D 2 11 HET GLC F 1 12 HET GLC F 2 11 HET EDO C 101 4 HET EDO C 102 4 HET EDO A 101 4 HET EDO A 102 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 GLC 4(C6 H12 O6) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 11 HOH *43(H2 O) HELIX 1 AA1 GLY C -332 GLY C -316 1 17 HELIX 2 AA2 LYS C -306 ALA C -297 1 10 HELIX 3 AA3 ALA C -296 GLY C -294 5 3 HELIX 4 AA4 ARG C -282 SER C -275 1 8 HELIX 5 AA5 ALA C -266 ASP C -261 1 6 HELIX 6 AA6 TYR C -258 ALA C -252 1 7 HELIX 7 AA7 GLU C -217 LYS C -206 1 12 HELIX 8 AA8 GLU C -195 ASP C -184 1 12 HELIX 9 AA9 ASN C -163 ASN C -147 1 17 HELIX 10 AB1 ASP C -139 LYS C -129 1 11 HELIX 11 AB2 GLY C -120 TRP C -118 5 3 HELIX 12 AB3 ALA C -117 SER C -110 1 8 HELIX 13 AB4 ASN C -76 TYR C -65 1 12 HELIX 14 AB5 THR C -62 LYS C -51 1 12 HELIX 15 AB6 LEU C -44 ALA C -36 1 9 HELIX 16 AB7 ASP C -34 GLY C -21 1 14 HELIX 17 AB8 GLN C -13 GLY C 5 1 19 HELIX 18 AB9 THR C 8 ARG C 22 1 15 HELIX 19 AC1 SER C 26 GLY C 55 1 30 HELIX 20 AC2 ASP C 64 ALA C 76 1 13 HELIX 21 AC3 GLY A -332 GLY A -316 1 17 HELIX 22 AC4 LYS A -306 ALA A -296 1 11 HELIX 23 AC5 ARG A -282 SER A -275 1 8 HELIX 24 AC6 ALA A -266 ASP A -261 1 6 HELIX 25 AC7 TYR A -258 VAL A -251 1 8 HELIX 26 AC8 GLU A -217 ALA A -207 1 11 HELIX 27 AC9 THR A -191 ASP A -184 1 8 HELIX 28 AD1 ASN A -163 ASN A -147 1 17 HELIX 29 AD2 ASP A -139 LYS A -129 1 11 HELIX 30 AD3 GLY A -120 TRP A -118 5 3 HELIX 31 AD4 ALA A -117 SER A -110 1 8 HELIX 32 AD5 ASN A -76 TYR A -65 1 12 HELIX 33 AD6 THR A -62 LYS A -51 1 12 HELIX 34 AD7 LEU A -44 ALA A -36 1 9 HELIX 35 AD8 ASP A -34 GLY A -21 1 14 HELIX 36 AD9 GLN A -13 SER A 4 1 18 HELIX 37 AE1 THR A 8 ALA A 20 1 13 HELIX 38 AE2 SER A 26 ASP A 56 1 31 HELIX 39 AE3 ASP A 64 ALA A 76 1 13 SHEET 1 AA1 6 VAL C-313 GLU C-310 0 SHEET 2 AA1 6 LEU C-341 TRP C-338 1 N ILE C-339 O THR C-312 SHEET 3 AA1 6 ILE C-289 ALA C-285 1 O PHE C-287 N TRP C-338 SHEET 4 AA1 6 PHE C -90 ILE C -82 -1 O SER C -85 N TRP C-286 SHEET 5 AA1 6 TYR C-242 GLU C-237 -1 N GLU C-237 O GLY C -88 SHEET 6 AA1 6 ALA C -47 VAL C -46 -1 O ALA C -47 N VAL C-238 SHEET 1 AA2 5 VAL C-313 GLU C-310 0 SHEET 2 AA2 5 LEU C-341 TRP C-338 1 N ILE C-339 O THR C-312 SHEET 3 AA2 5 ILE C-289 ALA C-285 1 O PHE C-287 N TRP C-338 SHEET 4 AA2 5 PHE C -90 ILE C -82 -1 O SER C -85 N TRP C-286 SHEET 5 AA2 5 GLU C -20 ILE C -19 1 O GLU C -20 N VAL C -89 SHEET 1 AA3 2 ARG C-250 TYR C-249 0 SHEET 2 AA3 2 LYS C-246 LEU C-245 -1 O LYS C-246 N TYR C-249 SHEET 1 AA4 4 SER C-203 LEU C-201 0 SHEET 2 AA4 4 THR C-126 ASN C-121 1 O ALA C-125 N SER C-203 SHEET 3 AA4 4 SER C-234 ASN C-230 -1 N ILE C-232 O THR C-123 SHEET 4 AA4 4 TYR C-106 THR C-103 -1 O THR C-103 N LEU C-233 SHEET 1 AA5 2 TYR C-181 ALA C-176 0 SHEET 2 AA5 2 LYS C-173 GLY C-166 -1 O ASP C-171 N LYS C-178 SHEET 1 AA6 2 VAL C 79 VAL C 80 0 SHEET 2 AA6 2 THR C 86 TYR C 87 -1 O TYR C 87 N VAL C 79 SHEET 1 AA7 6 LYS A-314 GLU A-310 0 SHEET 2 AA7 6 LYS A-342 TRP A-338 1 N ILE A-339 O GLU A-310 SHEET 3 AA7 6 ILE A-289 ALA A-285 1 O ILE A-289 N TRP A-338 SHEET 4 AA7 6 PHE A -90 ILE A -82 -1 O SER A -85 N TRP A-286 SHEET 5 AA7 6 TYR A-242 GLU A-237 -1 N GLU A-237 O GLY A -88 SHEET 6 AA7 6 ALA A -47 VAL A -46 -1 O ALA A -47 N VAL A-238 SHEET 1 AA8 5 LYS A-314 GLU A-310 0 SHEET 2 AA8 5 LYS A-342 TRP A-338 1 N ILE A-339 O GLU A-310 SHEET 3 AA8 5 ILE A-289 ALA A-285 1 O ILE A-289 N TRP A-338 SHEET 4 AA8 5 PHE A -90 ILE A -82 -1 O SER A -85 N TRP A-286 SHEET 5 AA8 5 GLU A -20 ILE A -19 1 O GLU A -20 N VAL A -89 SHEET 1 AA9 2 ARG A-250 TYR A-249 0 SHEET 2 AA9 2 LYS A-246 LEU A-245 -1 O LYS A-246 N TYR A-249 SHEET 1 AB1 4 SER A-203 LEU A-201 0 SHEET 2 AB1 4 THR A-126 ASN A-121 1 O MET A-124 N ALA A-202 SHEET 3 AB1 4 SER A-234 ASN A-230 -1 N ASN A-230 O ALA A-125 SHEET 4 AB1 4 TYR A-106 THR A-103 -1 O THR A-103 N LEU A-233 SHEET 1 AB2 2 TYR A-181 ALA A-176 0 SHEET 2 AB2 2 LYS A-173 GLY A-166 -1 O ASP A-171 N LYS A-178 SHEET 1 AB3 2 VAL A 79 GLU A 81 0 SHEET 2 AB3 2 GLY A 84 TYR A 87 -1 O GLY A 84 N GLU A 81 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.41 LINK O4 GLC F 1 C1 GLC F 2 1555 1555 1.41 CRYST1 112.596 94.206 102.340 90.00 100.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008881 0.000000 0.001660 0.00000 SCALE2 0.000000 0.010615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009941 0.00000