data_7VP1 # _entry.id 7VP1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VP1 pdb_00007vp1 10.2210/pdb7vp1/pdb WWPDB D_1300021684 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-19 2 'Structure model' 1 1 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_entry_details 4 2 'Structure model' pdbx_modification_feature # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7VP1 _pdbx_database_status.recvd_initial_deposition_date 2021-10-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email xdsu@pku.edu.cn _pdbx_contact_author.name_first Xiaodong _pdbx_contact_author.name_last Su _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6948-2317 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Y.' 1 ? 'Xu, Y.P.' 2 ? 'Wang, B.' 3 ? 'Su, X.D.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis for DNA recognition by TCP transcription factors' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.' 1 ? primary 'Xu, Y.P.' 2 ? primary 'Wang, B.' 3 ? primary 'Su, X.D.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription factor TCP10' 12045.242 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*C)-3') ; 3614.354 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3') ; 3712.430 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)GSSHHHHHHSSGLVPRGSH(MSE)GLKGYSVGEGGGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVR (MSE)SAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL ; ;MGSSHHHHHHSSGLVPRGSHMGLKGYSVGEGGGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRMSAHTAIQFYDV QDRLGYDRPSKAVDWLIKKAKTAIDKL ; A,B ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DC)(DC)' ATGTGGTCCCCC C ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DC)(DA)(DC)(DA)' TGGGGGACCACA D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MSE n 1 22 GLY n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 TYR n 1 27 SER n 1 28 VAL n 1 29 GLY n 1 30 GLU n 1 31 GLY n 1 32 GLY n 1 33 GLY n 1 34 GLU n 1 35 ILE n 1 36 VAL n 1 37 GLU n 1 38 VAL n 1 39 GLN n 1 40 GLY n 1 41 GLY n 1 42 HIS n 1 43 ILE n 1 44 ILE n 1 45 ARG n 1 46 ALA n 1 47 THR n 1 48 GLY n 1 49 ARG n 1 50 LYS n 1 51 ASP n 1 52 ARG n 1 53 HIS n 1 54 SER n 1 55 LYS n 1 56 VAL n 1 57 PHE n 1 58 THR n 1 59 SER n 1 60 LYS n 1 61 GLY n 1 62 PRO n 1 63 ARG n 1 64 ASP n 1 65 ARG n 1 66 ARG n 1 67 VAL n 1 68 ARG n 1 69 MSE n 1 70 SER n 1 71 ALA n 1 72 HIS n 1 73 THR n 1 74 ALA n 1 75 ILE n 1 76 GLN n 1 77 PHE n 1 78 TYR n 1 79 ASP n 1 80 VAL n 1 81 GLN n 1 82 ASP n 1 83 ARG n 1 84 LEU n 1 85 GLY n 1 86 TYR n 1 87 ASP n 1 88 ARG n 1 89 PRO n 1 90 SER n 1 91 LYS n 1 92 ALA n 1 93 VAL n 1 94 ASP n 1 95 TRP n 1 96 LEU n 1 97 ILE n 1 98 LYS n 1 99 LYS n 1 100 ALA n 1 101 LYS n 1 102 THR n 1 103 ALA n 1 104 ILE n 1 105 ASP n 1 106 LYS n 1 107 LEU n 2 1 DA n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DC n 2 9 DC n 2 10 DC n 2 11 DC n 2 12 DC n 3 1 DT n 3 2 DG n 3 3 DG n 3 4 DG n 3 5 DG n 3 6 DG n 3 7 DA n 3 8 DC n 3 9 DC n 3 10 DA n 3 11 DC n 3 12 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 107 _entity_src_gen.gene_src_common_name 'thale cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TCP10, At2g31070, T16B12.12' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MSE 21 1 ? ? ? A . n A 1 22 GLY 22 2 ? ? ? A . n A 1 23 LEU 23 3 ? ? ? A . n A 1 24 LYS 24 4 ? ? ? A . n A 1 25 GLY 25 5 ? ? ? A . n A 1 26 TYR 26 6 ? ? ? A . n A 1 27 SER 27 7 ? ? ? A . n A 1 28 VAL 28 8 ? ? ? A . n A 1 29 GLY 29 9 ? ? ? A . n A 1 30 GLU 30 10 ? ? ? A . n A 1 31 GLY 31 11 ? ? ? A . n A 1 32 GLY 32 12 ? ? ? A . n A 1 33 GLY 33 13 ? ? ? A . n A 1 34 GLU 34 14 ? ? ? A . n A 1 35 ILE 35 15 ? ? ? A . n A 1 36 VAL 36 16 ? ? ? A . n A 1 37 GLU 37 17 ? ? ? A . n A 1 38 VAL 38 18 ? ? ? A . n A 1 39 GLN 39 19 ? ? ? A . n A 1 40 GLY 40 20 ? ? ? A . n A 1 41 GLY 41 21 21 GLY GLY A . n A 1 42 HIS 42 22 22 HIS HIS A . n A 1 43 ILE 43 23 23 ILE ILE A . n A 1 44 ILE 44 24 24 ILE ILE A . n A 1 45 ARG 45 25 25 ARG ARG A . n A 1 46 ALA 46 26 26 ALA ALA A . n A 1 47 THR 47 27 27 THR THR A . n A 1 48 GLY 48 28 ? ? ? A . n A 1 49 ARG 49 29 29 ARG ARG A . n A 1 50 LYS 50 30 30 LYS LYS A . n A 1 51 ASP 51 31 31 ASP ASP A . n A 1 52 ARG 52 32 32 ARG ARG A . n A 1 53 HIS 53 33 33 HIS HIS A . n A 1 54 SER 54 34 34 SER SER A . n A 1 55 LYS 55 35 35 LYS LYS A . n A 1 56 VAL 56 36 36 VAL VAL A . n A 1 57 PHE 57 37 37 PHE PHE A . n A 1 58 THR 58 38 38 THR THR A . n A 1 59 SER 59 39 39 SER SER A . n A 1 60 LYS 60 40 40 LYS LYS A . n A 1 61 GLY 61 41 41 GLY GLY A . n A 1 62 PRO 62 42 42 PRO PRO A . n A 1 63 ARG 63 43 43 ARG ARG A . n A 1 64 ASP 64 44 44 ASP ASP A . n A 1 65 ARG 65 45 45 ARG ARG A . n A 1 66 ARG 66 46 46 ARG ARG A . n A 1 67 VAL 67 47 47 VAL VAL A . n A 1 68 ARG 68 48 48 ARG ARG A . n A 1 69 MSE 69 49 49 MSE MSE A . n A 1 70 SER 70 50 50 SER SER A . n A 1 71 ALA 71 51 51 ALA ALA A . n A 1 72 HIS 72 52 52 HIS HIS A . n A 1 73 THR 73 53 53 THR THR A . n A 1 74 ALA 74 54 54 ALA ALA A . n A 1 75 ILE 75 55 55 ILE ILE A . n A 1 76 GLN 76 56 56 GLN GLN A . n A 1 77 PHE 77 57 57 PHE PHE A . n A 1 78 TYR 78 58 58 TYR TYR A . n A 1 79 ASP 79 59 59 ASP ASP A . n A 1 80 VAL 80 60 60 VAL VAL A . n A 1 81 GLN 81 61 61 GLN GLN A . n A 1 82 ASP 82 62 62 ASP ASP A . n A 1 83 ARG 83 63 63 ARG ARG A . n A 1 84 LEU 84 64 64 LEU LEU A . n A 1 85 GLY 85 65 65 GLY GLY A . n A 1 86 TYR 86 66 66 TYR TYR A . n A 1 87 ASP 87 67 67 ASP ASP A . n A 1 88 ARG 88 68 68 ARG ARG A . n A 1 89 PRO 89 69 69 PRO PRO A . n A 1 90 SER 90 70 70 SER SER A . n A 1 91 LYS 91 71 71 LYS LYS A . n A 1 92 ALA 92 72 72 ALA ALA A . n A 1 93 VAL 93 73 73 VAL VAL A . n A 1 94 ASP 94 74 74 ASP ASP A . n A 1 95 TRP 95 75 75 TRP TRP A . n A 1 96 LEU 96 76 76 LEU LEU A . n A 1 97 ILE 97 77 77 ILE ILE A . n A 1 98 LYS 98 78 78 LYS LYS A . n A 1 99 LYS 99 79 79 LYS LYS A . n A 1 100 ALA 100 80 80 ALA ALA A . n A 1 101 LYS 101 81 81 LYS LYS A . n A 1 102 THR 102 82 82 THR THR A . n A 1 103 ALA 103 83 83 ALA ALA A . n A 1 104 ILE 104 84 84 ILE ILE A . n A 1 105 ASP 105 85 85 ASP ASP A . n A 1 106 LYS 106 86 86 LYS LYS A . n A 1 107 LEU 107 87 ? ? ? A . n B 1 1 MSE 1 -19 ? ? ? B . n B 1 2 GLY 2 -18 ? ? ? B . n B 1 3 SER 3 -17 ? ? ? B . n B 1 4 SER 4 -16 ? ? ? B . n B 1 5 HIS 5 -15 ? ? ? B . n B 1 6 HIS 6 -14 ? ? ? B . n B 1 7 HIS 7 -13 ? ? ? B . n B 1 8 HIS 8 -12 ? ? ? B . n B 1 9 HIS 9 -11 ? ? ? B . n B 1 10 HIS 10 -10 ? ? ? B . n B 1 11 SER 11 -9 ? ? ? B . n B 1 12 SER 12 -8 ? ? ? B . n B 1 13 GLY 13 -7 ? ? ? B . n B 1 14 LEU 14 -6 ? ? ? B . n B 1 15 VAL 15 -5 ? ? ? B . n B 1 16 PRO 16 -4 ? ? ? B . n B 1 17 ARG 17 -3 ? ? ? B . n B 1 18 GLY 18 -2 ? ? ? B . n B 1 19 SER 19 -1 ? ? ? B . n B 1 20 HIS 20 0 ? ? ? B . n B 1 21 MSE 21 1 ? ? ? B . n B 1 22 GLY 22 2 ? ? ? B . n B 1 23 LEU 23 3 ? ? ? B . n B 1 24 LYS 24 4 ? ? ? B . n B 1 25 GLY 25 5 ? ? ? B . n B 1 26 TYR 26 6 ? ? ? B . n B 1 27 SER 27 7 ? ? ? B . n B 1 28 VAL 28 8 ? ? ? B . n B 1 29 GLY 29 9 ? ? ? B . n B 1 30 GLU 30 10 ? ? ? B . n B 1 31 GLY 31 11 ? ? ? B . n B 1 32 GLY 32 12 ? ? ? B . n B 1 33 GLY 33 13 ? ? ? B . n B 1 34 GLU 34 14 ? ? ? B . n B 1 35 ILE 35 15 ? ? ? B . n B 1 36 VAL 36 16 ? ? ? B . n B 1 37 GLU 37 17 ? ? ? B . n B 1 38 VAL 38 18 ? ? ? B . n B 1 39 GLN 39 19 ? ? ? B . n B 1 40 GLY 40 20 ? ? ? B . n B 1 41 GLY 41 21 ? ? ? B . n B 1 42 HIS 42 22 ? ? ? B . n B 1 43 ILE 43 23 ? ? ? B . n B 1 44 ILE 44 24 ? ? ? B . n B 1 45 ARG 45 25 ? ? ? B . n B 1 46 ALA 46 26 ? ? ? B . n B 1 47 THR 47 27 ? ? ? B . n B 1 48 GLY 48 28 ? ? ? B . n B 1 49 ARG 49 29 ? ? ? B . n B 1 50 LYS 50 30 ? ? ? B . n B 1 51 ASP 51 31 ? ? ? B . n B 1 52 ARG 52 32 32 ARG ARG B . n B 1 53 HIS 53 33 33 HIS HIS B . n B 1 54 SER 54 34 34 SER SER B . n B 1 55 LYS 55 35 35 LYS LYS B . n B 1 56 VAL 56 36 36 VAL VAL B . n B 1 57 PHE 57 37 37 PHE PHE B . n B 1 58 THR 58 38 38 THR THR B . n B 1 59 SER 59 39 39 SER SER B . n B 1 60 LYS 60 40 40 LYS LYS B . n B 1 61 GLY 61 41 41 GLY GLY B . n B 1 62 PRO 62 42 42 PRO PRO B . n B 1 63 ARG 63 43 43 ARG ARG B . n B 1 64 ASP 64 44 44 ASP ASP B . n B 1 65 ARG 65 45 45 ARG ARG B . n B 1 66 ARG 66 46 46 ARG ARG B . n B 1 67 VAL 67 47 47 VAL VAL B . n B 1 68 ARG 68 48 48 ARG ARG B . n B 1 69 MSE 69 49 49 MSE MSE B . n B 1 70 SER 70 50 50 SER SER B . n B 1 71 ALA 71 51 51 ALA ALA B . n B 1 72 HIS 72 52 52 HIS HIS B . n B 1 73 THR 73 53 53 THR THR B . n B 1 74 ALA 74 54 54 ALA ALA B . n B 1 75 ILE 75 55 55 ILE ILE B . n B 1 76 GLN 76 56 56 GLN GLN B . n B 1 77 PHE 77 57 57 PHE PHE B . n B 1 78 TYR 78 58 58 TYR TYR B . n B 1 79 ASP 79 59 59 ASP ASP B . n B 1 80 VAL 80 60 60 VAL VAL B . n B 1 81 GLN 81 61 61 GLN GLN B . n B 1 82 ASP 82 62 62 ASP ASP B . n B 1 83 ARG 83 63 63 ARG ARG B . n B 1 84 LEU 84 64 64 LEU LEU B . n B 1 85 GLY 85 65 65 GLY GLY B . n B 1 86 TYR 86 66 66 TYR TYR B . n B 1 87 ASP 87 67 67 ASP ASP B . n B 1 88 ARG 88 68 68 ARG ARG B . n B 1 89 PRO 89 69 69 PRO PRO B . n B 1 90 SER 90 70 70 SER SER B . n B 1 91 LYS 91 71 71 LYS LYS B . n B 1 92 ALA 92 72 72 ALA ALA B . n B 1 93 VAL 93 73 73 VAL VAL B . n B 1 94 ASP 94 74 74 ASP ASP B . n B 1 95 TRP 95 75 75 TRP TRP B . n B 1 96 LEU 96 76 76 LEU LEU B . n B 1 97 ILE 97 77 77 ILE ILE B . n B 1 98 LYS 98 78 78 LYS LYS B . n B 1 99 LYS 99 79 79 LYS LYS B . n B 1 100 ALA 100 80 80 ALA ALA B . n B 1 101 LYS 101 81 81 LYS LYS B . n B 1 102 THR 102 82 82 THR THR B . n B 1 103 ALA 103 83 83 ALA ALA B . n B 1 104 ILE 104 84 84 ILE ILE B . n B 1 105 ASP 105 85 85 ASP ASP B . n B 1 106 LYS 106 86 ? ? ? B . n B 1 107 LEU 107 87 ? ? ? B . n C 2 1 DA 1 1 1 DA DA C . n C 2 2 DT 2 2 2 DT DT C . n C 2 3 DG 3 3 3 DG DG C . n C 2 4 DT 4 4 4 DT DT C . n C 2 5 DG 5 5 5 DG DG C . n C 2 6 DG 6 6 6 DG DG C . n C 2 7 DT 7 7 7 DT DT C . n C 2 8 DC 8 8 8 DC DC C . n C 2 9 DC 9 9 9 DC DC C . n C 2 10 DC 10 10 10 DC DC C . n C 2 11 DC 11 11 11 DC DC C . n C 2 12 DC 12 12 12 DC DC C . n D 3 1 DT 1 1 1 DT DT D . n D 3 2 DG 2 2 2 DG DG D . n D 3 3 DG 3 3 3 DG DG D . n D 3 4 DG 4 4 4 DG DG D . n D 3 5 DG 5 5 5 DG DG D . n D 3 6 DG 6 6 6 DG DG D . n D 3 7 DA 7 7 7 DA DA D . n D 3 8 DC 8 8 8 DC DC D . n D 3 9 DC 9 9 9 DC DC D . n D 3 10 DA 10 10 10 DA DA D . n D 3 11 DC 11 11 11 DC DC D . n D 3 12 DA 12 12 12 DA DA D . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 25 ? CG ? A ARG 45 CG 2 1 Y 1 A ARG 25 ? CD ? A ARG 45 CD 3 1 Y 1 A ARG 25 ? NE ? A ARG 45 NE 4 1 Y 1 A ARG 25 ? CZ ? A ARG 45 CZ 5 1 Y 1 A ARG 25 ? NH1 ? A ARG 45 NH1 6 1 Y 1 A ARG 25 ? NH2 ? A ARG 45 NH2 7 1 Y 1 A ARG 29 ? CG ? A ARG 49 CG 8 1 Y 1 A ARG 29 ? CD ? A ARG 49 CD 9 1 Y 1 A ARG 29 ? NE ? A ARG 49 NE 10 1 Y 1 A ARG 29 ? CZ ? A ARG 49 CZ 11 1 Y 1 A ARG 29 ? NH1 ? A ARG 49 NH1 12 1 Y 1 A ARG 29 ? NH2 ? A ARG 49 NH2 13 1 Y 1 A LYS 30 ? CG ? A LYS 50 CG 14 1 Y 1 A LYS 30 ? CD ? A LYS 50 CD 15 1 Y 1 A LYS 30 ? CE ? A LYS 50 CE 16 1 Y 1 A LYS 30 ? NZ ? A LYS 50 NZ 17 1 Y 1 A LYS 81 ? CG ? A LYS 101 CG 18 1 Y 1 A LYS 81 ? CD ? A LYS 101 CD 19 1 Y 1 A LYS 81 ? CE ? A LYS 101 CE 20 1 Y 1 A LYS 81 ? NZ ? A LYS 101 NZ 21 1 Y 1 A LYS 86 ? CG ? A LYS 106 CG 22 1 Y 1 A LYS 86 ? CD ? A LYS 106 CD 23 1 Y 1 A LYS 86 ? CE ? A LYS 106 CE 24 1 Y 1 A LYS 86 ? NZ ? A LYS 106 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7VP1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 68.123 _cell.length_a_esd ? _cell.length_b 68.123 _cell.length_b_esd ? _cell.length_c 210.819 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7VP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VP1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Potassium sodium tartrate tetrahydrate, 20% w/v Polyethylene glycol 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-12-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7VP1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.902 _reflns.d_resolution_low 29.21 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6982 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.52 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20 _reflns.pdbx_Rmerge_I_obs 0.1173 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 38.48 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.1189 _reflns.pdbx_Rpim_I_all 0.01942 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.902 _reflns_shell.d_res_low 3.006 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 653 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.6148 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.6228 _reflns_shell.pdbx_Rpim_I_all 0.09861 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.975 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 112.500 _refine.B_iso_mean 49.7307 _refine.B_iso_min 16.880 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7VP1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9020 _refine.ls_d_res_low 29.21 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6982 _refine.ls_number_reflns_R_free 1215 _refine.ls_number_reflns_R_work 10872 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.52 _refine.ls_percent_reflns_R_free 10.0500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1838 _refine.ls_R_factor_R_free 0.2385 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1778 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.7800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.9020 _refine_hist.d_res_low 29.21 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1442 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 143 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 956 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1518 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.941 ? 2143 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.057 ? 235 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 190 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 19.788 ? 827 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9020 3.0178 . . 134 1182 97.0000 . . . 0.2567 0.0000 0.1872 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0178 3.1550 . . 136 1203 100.0000 . . . 0.3238 0.0000 0.2099 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1550 3.3211 . . 134 1211 100.0000 . . . 0.2429 0.0000 0.1820 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3211 3.5289 . . 137 1210 100.0000 . . . 0.2443 0.0000 0.1788 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5289 3.8008 . . 134 1235 100.0000 . . . 0.3124 0.0000 0.1947 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8008 4.1823 . . 137 1194 100.0000 . . . 0.2337 0.0000 0.1744 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1823 4.7853 . . 134 1212 100.0000 . . . 0.1807 0.0000 0.1485 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.7853 6.0205 . . 134 1210 100.0000 . . . 0.2357 0.0000 0.1743 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.0205 29.21 . . 135 1215 100.0000 . . . 0.2074 0.0000 0.1804 . . . . . . . . . . . # _struct.entry_id 7VP1 _struct.title 'Structure of a transcription factor and DNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VP1 _struct_keywords.text 'Complex, Transcription factor, TRANSCRIPTION, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP TCP10_ARATH O82277 ? 1 ;MGLKGYSVGEGGGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA KTAIDKL ; 1 2 PDB 7VP1 7VP1 ? 2 ? 1 3 PDB 7VP1 7VP1 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7VP1 A 21 ? 107 ? O82277 1 ? 87 ? 1 87 2 1 7VP1 B 21 ? 107 ? O82277 1 ? 87 ? 1 87 3 2 7VP1 C 1 ? 12 ? 7VP1 1 ? 12 ? 1 12 4 3 7VP1 D 1 ? 12 ? 7VP1 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7VP1 MSE A 1 ? UNP O82277 ? ? 'initiating methionine' -19 1 1 7VP1 GLY A 2 ? UNP O82277 ? ? 'expression tag' -18 2 1 7VP1 SER A 3 ? UNP O82277 ? ? 'expression tag' -17 3 1 7VP1 SER A 4 ? UNP O82277 ? ? 'expression tag' -16 4 1 7VP1 HIS A 5 ? UNP O82277 ? ? 'expression tag' -15 5 1 7VP1 HIS A 6 ? UNP O82277 ? ? 'expression tag' -14 6 1 7VP1 HIS A 7 ? UNP O82277 ? ? 'expression tag' -13 7 1 7VP1 HIS A 8 ? UNP O82277 ? ? 'expression tag' -12 8 1 7VP1 HIS A 9 ? UNP O82277 ? ? 'expression tag' -11 9 1 7VP1 HIS A 10 ? UNP O82277 ? ? 'expression tag' -10 10 1 7VP1 SER A 11 ? UNP O82277 ? ? 'expression tag' -9 11 1 7VP1 SER A 12 ? UNP O82277 ? ? 'expression tag' -8 12 1 7VP1 GLY A 13 ? UNP O82277 ? ? 'expression tag' -7 13 1 7VP1 LEU A 14 ? UNP O82277 ? ? 'expression tag' -6 14 1 7VP1 VAL A 15 ? UNP O82277 ? ? 'expression tag' -5 15 1 7VP1 PRO A 16 ? UNP O82277 ? ? 'expression tag' -4 16 1 7VP1 ARG A 17 ? UNP O82277 ? ? 'expression tag' -3 17 1 7VP1 GLY A 18 ? UNP O82277 ? ? 'expression tag' -2 18 1 7VP1 SER A 19 ? UNP O82277 ? ? 'expression tag' -1 19 1 7VP1 HIS A 20 ? UNP O82277 ? ? 'expression tag' 0 20 1 7VP1 MSE A 69 ? UNP O82277 LEU 49 'engineered mutation' 49 21 2 7VP1 MSE B 1 ? UNP O82277 ? ? 'initiating methionine' -19 22 2 7VP1 GLY B 2 ? UNP O82277 ? ? 'expression tag' -18 23 2 7VP1 SER B 3 ? UNP O82277 ? ? 'expression tag' -17 24 2 7VP1 SER B 4 ? UNP O82277 ? ? 'expression tag' -16 25 2 7VP1 HIS B 5 ? UNP O82277 ? ? 'expression tag' -15 26 2 7VP1 HIS B 6 ? UNP O82277 ? ? 'expression tag' -14 27 2 7VP1 HIS B 7 ? UNP O82277 ? ? 'expression tag' -13 28 2 7VP1 HIS B 8 ? UNP O82277 ? ? 'expression tag' -12 29 2 7VP1 HIS B 9 ? UNP O82277 ? ? 'expression tag' -11 30 2 7VP1 HIS B 10 ? UNP O82277 ? ? 'expression tag' -10 31 2 7VP1 SER B 11 ? UNP O82277 ? ? 'expression tag' -9 32 2 7VP1 SER B 12 ? UNP O82277 ? ? 'expression tag' -8 33 2 7VP1 GLY B 13 ? UNP O82277 ? ? 'expression tag' -7 34 2 7VP1 LEU B 14 ? UNP O82277 ? ? 'expression tag' -6 35 2 7VP1 VAL B 15 ? UNP O82277 ? ? 'expression tag' -5 36 2 7VP1 PRO B 16 ? UNP O82277 ? ? 'expression tag' -4 37 2 7VP1 ARG B 17 ? UNP O82277 ? ? 'expression tag' -3 38 2 7VP1 GLY B 18 ? UNP O82277 ? ? 'expression tag' -2 39 2 7VP1 SER B 19 ? UNP O82277 ? ? 'expression tag' -1 40 2 7VP1 HIS B 20 ? UNP O82277 ? ? 'expression tag' 0 41 2 7VP1 MSE B 69 ? UNP O82277 LEU 49 'engineered mutation' 49 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8300 ? 1 MORE -52 ? 1 'SSA (A^2)' 9250 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 70 ? GLY A 85 ? SER A 50 GLY A 65 1 ? 16 HELX_P HELX_P2 AA2 ARG A 88 ? ALA A 100 ? ARG A 68 ALA A 80 1 ? 13 HELX_P HELX_P3 AA3 SER B 70 ? GLY B 85 ? SER B 50 GLY B 65 1 ? 16 HELX_P HELX_P4 AA4 ARG B 88 ? LYS B 99 ? ARG B 68 LYS B 79 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ARG 68 C ? ? ? 1_555 A MSE 69 N ? ? A ARG 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 69 C ? ? ? 1_555 A SER 70 N ? ? A MSE 49 A SER 50 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? B ARG 68 C ? ? ? 1_555 B MSE 69 N ? ? B ARG 48 B MSE 49 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? B MSE 69 C ? ? ? 1_555 B SER 70 N ? ? B MSE 49 B SER 50 1_555 ? ? ? ? ? ? ? 1.329 ? ? hydrog1 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 12 N1 ? ? C DT 2 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 12 N6 ? ? C DT 2 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 3 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 3 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 3 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 4 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 4 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 5 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 5 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 5 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 6 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 6 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 6 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 7 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 7 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 8 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 8 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 8 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 9 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 9 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 9 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 10 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 10 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 10 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 11 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 11 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 11 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 12 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 12 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 12 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 69 ? . . . . MSE A 49 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE B 69 ? . . . . MSE B 49 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 42 ? ILE A 44 ? HIS A 22 ILE A 24 AA1 2 LYS A 55 ? THR A 58 ? LYS A 35 THR A 38 AA1 3 GLY A 61 ? ARG A 63 ? GLY A 41 ARG A 43 AA2 1 ARG A 66 ? ARG A 68 ? ARG A 46 ARG A 48 AA2 2 ARG B 66 ? ARG B 68 ? ARG B 46 ARG B 48 AA3 1 VAL B 56 ? THR B 58 ? VAL B 36 THR B 38 AA3 2 GLY B 61 ? ARG B 63 ? GLY B 41 ARG B 43 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 42 ? N HIS A 22 O PHE A 57 ? O PHE A 37 AA1 2 3 N THR A 58 ? N THR A 38 O GLY A 61 ? O GLY A 41 AA2 1 2 N VAL A 67 ? N VAL A 47 O VAL B 67 ? O VAL B 47 AA3 1 2 N THR B 58 ? N THR B 38 O GLY B 61 ? O GLY B 41 # _pdbx_entry_details.entry_id 7VP1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DT 4 ? ? "C3'" C DT 4 ? ? 1.380 1.419 -0.039 0.006 N 2 1 "O3'" D DG 4 ? ? "C3'" D DG 4 ? ? 1.382 1.419 -0.037 0.006 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 79 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -88.95 _pdbx_validate_torsion.psi 37.58 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.6027 _pdbx_refine_tls.origin_y 23.5675 _pdbx_refine_tls.origin_z 4.5119 _pdbx_refine_tls.T[1][1] 0.0905 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0292 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0925 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3343 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0673 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.2216 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.7130 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.8467 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.2001 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.4041 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.2308 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.3605 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0433 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0936 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0753 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0032 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0140 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0625 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.1640 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.0375 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0058 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 21 ? ? ? A 86 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? B 32 ? ? ? B 85 ? ? all 3 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? ? C 12 ? ? all 4 'X-RAY DIFFRACTION' 1 ? ? D 1 ? ? ? D 12 ? ? all # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -19 ? A MSE 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MSE 1 ? A MSE 21 22 1 Y 1 A GLY 2 ? A GLY 22 23 1 Y 1 A LEU 3 ? A LEU 23 24 1 Y 1 A LYS 4 ? A LYS 24 25 1 Y 1 A GLY 5 ? A GLY 25 26 1 Y 1 A TYR 6 ? A TYR 26 27 1 Y 1 A SER 7 ? A SER 27 28 1 Y 1 A VAL 8 ? A VAL 28 29 1 Y 1 A GLY 9 ? A GLY 29 30 1 Y 1 A GLU 10 ? A GLU 30 31 1 Y 1 A GLY 11 ? A GLY 31 32 1 Y 1 A GLY 12 ? A GLY 32 33 1 Y 1 A GLY 13 ? A GLY 33 34 1 Y 1 A GLU 14 ? A GLU 34 35 1 Y 1 A ILE 15 ? A ILE 35 36 1 Y 1 A VAL 16 ? A VAL 36 37 1 Y 1 A GLU 17 ? A GLU 37 38 1 Y 1 A VAL 18 ? A VAL 38 39 1 Y 1 A GLN 19 ? A GLN 39 40 1 Y 1 A GLY 20 ? A GLY 40 41 1 Y 1 A GLY 28 ? A GLY 48 42 1 Y 1 A LEU 87 ? A LEU 107 43 1 Y 1 B MSE -19 ? B MSE 1 44 1 Y 1 B GLY -18 ? B GLY 2 45 1 Y 1 B SER -17 ? B SER 3 46 1 Y 1 B SER -16 ? B SER 4 47 1 Y 1 B HIS -15 ? B HIS 5 48 1 Y 1 B HIS -14 ? B HIS 6 49 1 Y 1 B HIS -13 ? B HIS 7 50 1 Y 1 B HIS -12 ? B HIS 8 51 1 Y 1 B HIS -11 ? B HIS 9 52 1 Y 1 B HIS -10 ? B HIS 10 53 1 Y 1 B SER -9 ? B SER 11 54 1 Y 1 B SER -8 ? B SER 12 55 1 Y 1 B GLY -7 ? B GLY 13 56 1 Y 1 B LEU -6 ? B LEU 14 57 1 Y 1 B VAL -5 ? B VAL 15 58 1 Y 1 B PRO -4 ? B PRO 16 59 1 Y 1 B ARG -3 ? B ARG 17 60 1 Y 1 B GLY -2 ? B GLY 18 61 1 Y 1 B SER -1 ? B SER 19 62 1 Y 1 B HIS 0 ? B HIS 20 63 1 Y 1 B MSE 1 ? B MSE 21 64 1 Y 1 B GLY 2 ? B GLY 22 65 1 Y 1 B LEU 3 ? B LEU 23 66 1 Y 1 B LYS 4 ? B LYS 24 67 1 Y 1 B GLY 5 ? B GLY 25 68 1 Y 1 B TYR 6 ? B TYR 26 69 1 Y 1 B SER 7 ? B SER 27 70 1 Y 1 B VAL 8 ? B VAL 28 71 1 Y 1 B GLY 9 ? B GLY 29 72 1 Y 1 B GLU 10 ? B GLU 30 73 1 Y 1 B GLY 11 ? B GLY 31 74 1 Y 1 B GLY 12 ? B GLY 32 75 1 Y 1 B GLY 13 ? B GLY 33 76 1 Y 1 B GLU 14 ? B GLU 34 77 1 Y 1 B ILE 15 ? B ILE 35 78 1 Y 1 B VAL 16 ? B VAL 36 79 1 Y 1 B GLU 17 ? B GLU 37 80 1 Y 1 B VAL 18 ? B VAL 38 81 1 Y 1 B GLN 19 ? B GLN 39 82 1 Y 1 B GLY 20 ? B GLY 40 83 1 Y 1 B GLY 21 ? B GLY 41 84 1 Y 1 B HIS 22 ? B HIS 42 85 1 Y 1 B ILE 23 ? B ILE 43 86 1 Y 1 B ILE 24 ? B ILE 44 87 1 Y 1 B ARG 25 ? B ARG 45 88 1 Y 1 B ALA 26 ? B ALA 46 89 1 Y 1 B THR 27 ? B THR 47 90 1 Y 1 B GLY 28 ? B GLY 48 91 1 Y 1 B ARG 29 ? B ARG 49 92 1 Y 1 B LYS 30 ? B LYS 50 93 1 Y 1 B ASP 31 ? B ASP 51 94 1 Y 1 B LYS 86 ? B LYS 106 95 1 Y 1 B LEU 87 ? B LEU 107 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 DA OP3 O N N 57 DA P P N N 58 DA OP1 O N N 59 DA OP2 O N N 60 DA "O5'" O N N 61 DA "C5'" C N N 62 DA "C4'" C N R 63 DA "O4'" O N N 64 DA "C3'" C N S 65 DA "O3'" O N N 66 DA "C2'" C N N 67 DA "C1'" C N R 68 DA N9 N Y N 69 DA C8 C Y N 70 DA N7 N Y N 71 DA C5 C Y N 72 DA C6 C Y N 73 DA N6 N N N 74 DA N1 N Y N 75 DA C2 C Y N 76 DA N3 N Y N 77 DA C4 C Y N 78 DA HOP3 H N N 79 DA HOP2 H N N 80 DA "H5'" H N N 81 DA "H5''" H N N 82 DA "H4'" H N N 83 DA "H3'" H N N 84 DA "HO3'" H N N 85 DA "H2'" H N N 86 DA "H2''" H N N 87 DA "H1'" H N N 88 DA H8 H N N 89 DA H61 H N N 90 DA H62 H N N 91 DA H2 H N N 92 DC OP3 O N N 93 DC P P N N 94 DC OP1 O N N 95 DC OP2 O N N 96 DC "O5'" O N N 97 DC "C5'" C N N 98 DC "C4'" C N R 99 DC "O4'" O N N 100 DC "C3'" C N S 101 DC "O3'" O N N 102 DC "C2'" C N N 103 DC "C1'" C N R 104 DC N1 N N N 105 DC C2 C N N 106 DC O2 O N N 107 DC N3 N N N 108 DC C4 C N N 109 DC N4 N N N 110 DC C5 C N N 111 DC C6 C N N 112 DC HOP3 H N N 113 DC HOP2 H N N 114 DC "H5'" H N N 115 DC "H5''" H N N 116 DC "H4'" H N N 117 DC "H3'" H N N 118 DC "HO3'" H N N 119 DC "H2'" H N N 120 DC "H2''" H N N 121 DC "H1'" H N N 122 DC H41 H N N 123 DC H42 H N N 124 DC H5 H N N 125 DC H6 H N N 126 DG OP3 O N N 127 DG P P N N 128 DG OP1 O N N 129 DG OP2 O N N 130 DG "O5'" O N N 131 DG "C5'" C N N 132 DG "C4'" C N R 133 DG "O4'" O N N 134 DG "C3'" C N S 135 DG "O3'" O N N 136 DG "C2'" C N N 137 DG "C1'" C N R 138 DG N9 N Y N 139 DG C8 C Y N 140 DG N7 N Y N 141 DG C5 C Y N 142 DG C6 C N N 143 DG O6 O N N 144 DG N1 N N N 145 DG C2 C N N 146 DG N2 N N N 147 DG N3 N N N 148 DG C4 C Y N 149 DG HOP3 H N N 150 DG HOP2 H N N 151 DG "H5'" H N N 152 DG "H5''" H N N 153 DG "H4'" H N N 154 DG "H3'" H N N 155 DG "HO3'" H N N 156 DG "H2'" H N N 157 DG "H2''" H N N 158 DG "H1'" H N N 159 DG H8 H N N 160 DG H1 H N N 161 DG H21 H N N 162 DG H22 H N N 163 DT OP3 O N N 164 DT P P N N 165 DT OP1 O N N 166 DT OP2 O N N 167 DT "O5'" O N N 168 DT "C5'" C N N 169 DT "C4'" C N R 170 DT "O4'" O N N 171 DT "C3'" C N S 172 DT "O3'" O N N 173 DT "C2'" C N N 174 DT "C1'" C N R 175 DT N1 N N N 176 DT C2 C N N 177 DT O2 O N N 178 DT N3 N N N 179 DT C4 C N N 180 DT O4 O N N 181 DT C5 C N N 182 DT C7 C N N 183 DT C6 C N N 184 DT HOP3 H N N 185 DT HOP2 H N N 186 DT "H5'" H N N 187 DT "H5''" H N N 188 DT "H4'" H N N 189 DT "H3'" H N N 190 DT "HO3'" H N N 191 DT "H2'" H N N 192 DT "H2''" H N N 193 DT "H1'" H N N 194 DT H3 H N N 195 DT H71 H N N 196 DT H72 H N N 197 DT H73 H N N 198 DT H6 H N N 199 GLN N N N N 200 GLN CA C N S 201 GLN C C N N 202 GLN O O N N 203 GLN CB C N N 204 GLN CG C N N 205 GLN CD C N N 206 GLN OE1 O N N 207 GLN NE2 N N N 208 GLN OXT O N N 209 GLN H H N N 210 GLN H2 H N N 211 GLN HA H N N 212 GLN HB2 H N N 213 GLN HB3 H N N 214 GLN HG2 H N N 215 GLN HG3 H N N 216 GLN HE21 H N N 217 GLN HE22 H N N 218 GLN HXT H N N 219 GLU N N N N 220 GLU CA C N S 221 GLU C C N N 222 GLU O O N N 223 GLU CB C N N 224 GLU CG C N N 225 GLU CD C N N 226 GLU OE1 O N N 227 GLU OE2 O N N 228 GLU OXT O N N 229 GLU H H N N 230 GLU H2 H N N 231 GLU HA H N N 232 GLU HB2 H N N 233 GLU HB3 H N N 234 GLU HG2 H N N 235 GLU HG3 H N N 236 GLU HE2 H N N 237 GLU HXT H N N 238 GLY N N N N 239 GLY CA C N N 240 GLY C C N N 241 GLY O O N N 242 GLY OXT O N N 243 GLY H H N N 244 GLY H2 H N N 245 GLY HA2 H N N 246 GLY HA3 H N N 247 GLY HXT H N N 248 HIS N N N N 249 HIS CA C N S 250 HIS C C N N 251 HIS O O N N 252 HIS CB C N N 253 HIS CG C Y N 254 HIS ND1 N Y N 255 HIS CD2 C Y N 256 HIS CE1 C Y N 257 HIS NE2 N Y N 258 HIS OXT O N N 259 HIS H H N N 260 HIS H2 H N N 261 HIS HA H N N 262 HIS HB2 H N N 263 HIS HB3 H N N 264 HIS HD1 H N N 265 HIS HD2 H N N 266 HIS HE1 H N N 267 HIS HE2 H N N 268 HIS HXT H N N 269 ILE N N N N 270 ILE CA C N S 271 ILE C C N N 272 ILE O O N N 273 ILE CB C N S 274 ILE CG1 C N N 275 ILE CG2 C N N 276 ILE CD1 C N N 277 ILE OXT O N N 278 ILE H H N N 279 ILE H2 H N N 280 ILE HA H N N 281 ILE HB H N N 282 ILE HG12 H N N 283 ILE HG13 H N N 284 ILE HG21 H N N 285 ILE HG22 H N N 286 ILE HG23 H N N 287 ILE HD11 H N N 288 ILE HD12 H N N 289 ILE HD13 H N N 290 ILE HXT H N N 291 LEU N N N N 292 LEU CA C N S 293 LEU C C N N 294 LEU O O N N 295 LEU CB C N N 296 LEU CG C N N 297 LEU CD1 C N N 298 LEU CD2 C N N 299 LEU OXT O N N 300 LEU H H N N 301 LEU H2 H N N 302 LEU HA H N N 303 LEU HB2 H N N 304 LEU HB3 H N N 305 LEU HG H N N 306 LEU HD11 H N N 307 LEU HD12 H N N 308 LEU HD13 H N N 309 LEU HD21 H N N 310 LEU HD22 H N N 311 LEU HD23 H N N 312 LEU HXT H N N 313 LYS N N N N 314 LYS CA C N S 315 LYS C C N N 316 LYS O O N N 317 LYS CB C N N 318 LYS CG C N N 319 LYS CD C N N 320 LYS CE C N N 321 LYS NZ N N N 322 LYS OXT O N N 323 LYS H H N N 324 LYS H2 H N N 325 LYS HA H N N 326 LYS HB2 H N N 327 LYS HB3 H N N 328 LYS HG2 H N N 329 LYS HG3 H N N 330 LYS HD2 H N N 331 LYS HD3 H N N 332 LYS HE2 H N N 333 LYS HE3 H N N 334 LYS HZ1 H N N 335 LYS HZ2 H N N 336 LYS HZ3 H N N 337 LYS HXT H N N 338 MSE N N N N 339 MSE CA C N S 340 MSE C C N N 341 MSE O O N N 342 MSE OXT O N N 343 MSE CB C N N 344 MSE CG C N N 345 MSE SE SE N N 346 MSE CE C N N 347 MSE H H N N 348 MSE H2 H N N 349 MSE HA H N N 350 MSE HXT H N N 351 MSE HB2 H N N 352 MSE HB3 H N N 353 MSE HG2 H N N 354 MSE HG3 H N N 355 MSE HE1 H N N 356 MSE HE2 H N N 357 MSE HE3 H N N 358 PHE N N N N 359 PHE CA C N S 360 PHE C C N N 361 PHE O O N N 362 PHE CB C N N 363 PHE CG C Y N 364 PHE CD1 C Y N 365 PHE CD2 C Y N 366 PHE CE1 C Y N 367 PHE CE2 C Y N 368 PHE CZ C Y N 369 PHE OXT O N N 370 PHE H H N N 371 PHE H2 H N N 372 PHE HA H N N 373 PHE HB2 H N N 374 PHE HB3 H N N 375 PHE HD1 H N N 376 PHE HD2 H N N 377 PHE HE1 H N N 378 PHE HE2 H N N 379 PHE HZ H N N 380 PHE HXT H N N 381 PRO N N N N 382 PRO CA C N S 383 PRO C C N N 384 PRO O O N N 385 PRO CB C N N 386 PRO CG C N N 387 PRO CD C N N 388 PRO OXT O N N 389 PRO H H N N 390 PRO HA H N N 391 PRO HB2 H N N 392 PRO HB3 H N N 393 PRO HG2 H N N 394 PRO HG3 H N N 395 PRO HD2 H N N 396 PRO HD3 H N N 397 PRO HXT H N N 398 SER N N N N 399 SER CA C N S 400 SER C C N N 401 SER O O N N 402 SER CB C N N 403 SER OG O N N 404 SER OXT O N N 405 SER H H N N 406 SER H2 H N N 407 SER HA H N N 408 SER HB2 H N N 409 SER HB3 H N N 410 SER HG H N N 411 SER HXT H N N 412 THR N N N N 413 THR CA C N S 414 THR C C N N 415 THR O O N N 416 THR CB C N R 417 THR OG1 O N N 418 THR CG2 C N N 419 THR OXT O N N 420 THR H H N N 421 THR H2 H N N 422 THR HA H N N 423 THR HB H N N 424 THR HG1 H N N 425 THR HG21 H N N 426 THR HG22 H N N 427 THR HG23 H N N 428 THR HXT H N N 429 TRP N N N N 430 TRP CA C N S 431 TRP C C N N 432 TRP O O N N 433 TRP CB C N N 434 TRP CG C Y N 435 TRP CD1 C Y N 436 TRP CD2 C Y N 437 TRP NE1 N Y N 438 TRP CE2 C Y N 439 TRP CE3 C Y N 440 TRP CZ2 C Y N 441 TRP CZ3 C Y N 442 TRP CH2 C Y N 443 TRP OXT O N N 444 TRP H H N N 445 TRP H2 H N N 446 TRP HA H N N 447 TRP HB2 H N N 448 TRP HB3 H N N 449 TRP HD1 H N N 450 TRP HE1 H N N 451 TRP HE3 H N N 452 TRP HZ2 H N N 453 TRP HZ3 H N N 454 TRP HH2 H N N 455 TRP HXT H N N 456 TYR N N N N 457 TYR CA C N S 458 TYR C C N N 459 TYR O O N N 460 TYR CB C N N 461 TYR CG C Y N 462 TYR CD1 C Y N 463 TYR CD2 C Y N 464 TYR CE1 C Y N 465 TYR CE2 C Y N 466 TYR CZ C Y N 467 TYR OH O N N 468 TYR OXT O N N 469 TYR H H N N 470 TYR H2 H N N 471 TYR HA H N N 472 TYR HB2 H N N 473 TYR HB3 H N N 474 TYR HD1 H N N 475 TYR HD2 H N N 476 TYR HE1 H N N 477 TYR HE2 H N N 478 TYR HH H N N 479 TYR HXT H N N 480 VAL N N N N 481 VAL CA C N S 482 VAL C C N N 483 VAL O O N N 484 VAL CB C N N 485 VAL CG1 C N N 486 VAL CG2 C N N 487 VAL OXT O N N 488 VAL H H N N 489 VAL H2 H N N 490 VAL HA H N N 491 VAL HB H N N 492 VAL HG11 H N N 493 VAL HG12 H N N 494 VAL HG13 H N N 495 VAL HG21 H N N 496 VAL HG22 H N N 497 VAL HG23 H N N 498 VAL HXT H N N 499 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 DA OP3 P sing N N 54 DA OP3 HOP3 sing N N 55 DA P OP1 doub N N 56 DA P OP2 sing N N 57 DA P "O5'" sing N N 58 DA OP2 HOP2 sing N N 59 DA "O5'" "C5'" sing N N 60 DA "C5'" "C4'" sing N N 61 DA "C5'" "H5'" sing N N 62 DA "C5'" "H5''" sing N N 63 DA "C4'" "O4'" sing N N 64 DA "C4'" "C3'" sing N N 65 DA "C4'" "H4'" sing N N 66 DA "O4'" "C1'" sing N N 67 DA "C3'" "O3'" sing N N 68 DA "C3'" "C2'" sing N N 69 DA "C3'" "H3'" sing N N 70 DA "O3'" "HO3'" sing N N 71 DA "C2'" "C1'" sing N N 72 DA "C2'" "H2'" sing N N 73 DA "C2'" "H2''" sing N N 74 DA "C1'" N9 sing N N 75 DA "C1'" "H1'" sing N N 76 DA N9 C8 sing Y N 77 DA N9 C4 sing Y N 78 DA C8 N7 doub Y N 79 DA C8 H8 sing N N 80 DA N7 C5 sing Y N 81 DA C5 C6 sing Y N 82 DA C5 C4 doub Y N 83 DA C6 N6 sing N N 84 DA C6 N1 doub Y N 85 DA N6 H61 sing N N 86 DA N6 H62 sing N N 87 DA N1 C2 sing Y N 88 DA C2 N3 doub Y N 89 DA C2 H2 sing N N 90 DA N3 C4 sing Y N 91 DC OP3 P sing N N 92 DC OP3 HOP3 sing N N 93 DC P OP1 doub N N 94 DC P OP2 sing N N 95 DC P "O5'" sing N N 96 DC OP2 HOP2 sing N N 97 DC "O5'" "C5'" sing N N 98 DC "C5'" "C4'" sing N N 99 DC "C5'" "H5'" sing N N 100 DC "C5'" "H5''" sing N N 101 DC "C4'" "O4'" sing N N 102 DC "C4'" "C3'" sing N N 103 DC "C4'" "H4'" sing N N 104 DC "O4'" "C1'" sing N N 105 DC "C3'" "O3'" sing N N 106 DC "C3'" "C2'" sing N N 107 DC "C3'" "H3'" sing N N 108 DC "O3'" "HO3'" sing N N 109 DC "C2'" "C1'" sing N N 110 DC "C2'" "H2'" sing N N 111 DC "C2'" "H2''" sing N N 112 DC "C1'" N1 sing N N 113 DC "C1'" "H1'" sing N N 114 DC N1 C2 sing N N 115 DC N1 C6 sing N N 116 DC C2 O2 doub N N 117 DC C2 N3 sing N N 118 DC N3 C4 doub N N 119 DC C4 N4 sing N N 120 DC C4 C5 sing N N 121 DC N4 H41 sing N N 122 DC N4 H42 sing N N 123 DC C5 C6 doub N N 124 DC C5 H5 sing N N 125 DC C6 H6 sing N N 126 DG OP3 P sing N N 127 DG OP3 HOP3 sing N N 128 DG P OP1 doub N N 129 DG P OP2 sing N N 130 DG P "O5'" sing N N 131 DG OP2 HOP2 sing N N 132 DG "O5'" "C5'" sing N N 133 DG "C5'" "C4'" sing N N 134 DG "C5'" "H5'" sing N N 135 DG "C5'" "H5''" sing N N 136 DG "C4'" "O4'" sing N N 137 DG "C4'" "C3'" sing N N 138 DG "C4'" "H4'" sing N N 139 DG "O4'" "C1'" sing N N 140 DG "C3'" "O3'" sing N N 141 DG "C3'" "C2'" sing N N 142 DG "C3'" "H3'" sing N N 143 DG "O3'" "HO3'" sing N N 144 DG "C2'" "C1'" sing N N 145 DG "C2'" "H2'" sing N N 146 DG "C2'" "H2''" sing N N 147 DG "C1'" N9 sing N N 148 DG "C1'" "H1'" sing N N 149 DG N9 C8 sing Y N 150 DG N9 C4 sing Y N 151 DG C8 N7 doub Y N 152 DG C8 H8 sing N N 153 DG N7 C5 sing Y N 154 DG C5 C6 sing N N 155 DG C5 C4 doub Y N 156 DG C6 O6 doub N N 157 DG C6 N1 sing N N 158 DG N1 C2 sing N N 159 DG N1 H1 sing N N 160 DG C2 N2 sing N N 161 DG C2 N3 doub N N 162 DG N2 H21 sing N N 163 DG N2 H22 sing N N 164 DG N3 C4 sing N N 165 DT OP3 P sing N N 166 DT OP3 HOP3 sing N N 167 DT P OP1 doub N N 168 DT P OP2 sing N N 169 DT P "O5'" sing N N 170 DT OP2 HOP2 sing N N 171 DT "O5'" "C5'" sing N N 172 DT "C5'" "C4'" sing N N 173 DT "C5'" "H5'" sing N N 174 DT "C5'" "H5''" sing N N 175 DT "C4'" "O4'" sing N N 176 DT "C4'" "C3'" sing N N 177 DT "C4'" "H4'" sing N N 178 DT "O4'" "C1'" sing N N 179 DT "C3'" "O3'" sing N N 180 DT "C3'" "C2'" sing N N 181 DT "C3'" "H3'" sing N N 182 DT "O3'" "HO3'" sing N N 183 DT "C2'" "C1'" sing N N 184 DT "C2'" "H2'" sing N N 185 DT "C2'" "H2''" sing N N 186 DT "C1'" N1 sing N N 187 DT "C1'" "H1'" sing N N 188 DT N1 C2 sing N N 189 DT N1 C6 sing N N 190 DT C2 O2 doub N N 191 DT C2 N3 sing N N 192 DT N3 C4 sing N N 193 DT N3 H3 sing N N 194 DT C4 O4 doub N N 195 DT C4 C5 sing N N 196 DT C5 C7 sing N N 197 DT C5 C6 doub N N 198 DT C7 H71 sing N N 199 DT C7 H72 sing N N 200 DT C7 H73 sing N N 201 DT C6 H6 sing N N 202 GLN N CA sing N N 203 GLN N H sing N N 204 GLN N H2 sing N N 205 GLN CA C sing N N 206 GLN CA CB sing N N 207 GLN CA HA sing N N 208 GLN C O doub N N 209 GLN C OXT sing N N 210 GLN CB CG sing N N 211 GLN CB HB2 sing N N 212 GLN CB HB3 sing N N 213 GLN CG CD sing N N 214 GLN CG HG2 sing N N 215 GLN CG HG3 sing N N 216 GLN CD OE1 doub N N 217 GLN CD NE2 sing N N 218 GLN NE2 HE21 sing N N 219 GLN NE2 HE22 sing N N 220 GLN OXT HXT sing N N 221 GLU N CA sing N N 222 GLU N H sing N N 223 GLU N H2 sing N N 224 GLU CA C sing N N 225 GLU CA CB sing N N 226 GLU CA HA sing N N 227 GLU C O doub N N 228 GLU C OXT sing N N 229 GLU CB CG sing N N 230 GLU CB HB2 sing N N 231 GLU CB HB3 sing N N 232 GLU CG CD sing N N 233 GLU CG HG2 sing N N 234 GLU CG HG3 sing N N 235 GLU CD OE1 doub N N 236 GLU CD OE2 sing N N 237 GLU OE2 HE2 sing N N 238 GLU OXT HXT sing N N 239 GLY N CA sing N N 240 GLY N H sing N N 241 GLY N H2 sing N N 242 GLY CA C sing N N 243 GLY CA HA2 sing N N 244 GLY CA HA3 sing N N 245 GLY C O doub N N 246 GLY C OXT sing N N 247 GLY OXT HXT sing N N 248 HIS N CA sing N N 249 HIS N H sing N N 250 HIS N H2 sing N N 251 HIS CA C sing N N 252 HIS CA CB sing N N 253 HIS CA HA sing N N 254 HIS C O doub N N 255 HIS C OXT sing N N 256 HIS CB CG sing N N 257 HIS CB HB2 sing N N 258 HIS CB HB3 sing N N 259 HIS CG ND1 sing Y N 260 HIS CG CD2 doub Y N 261 HIS ND1 CE1 doub Y N 262 HIS ND1 HD1 sing N N 263 HIS CD2 NE2 sing Y N 264 HIS CD2 HD2 sing N N 265 HIS CE1 NE2 sing Y N 266 HIS CE1 HE1 sing N N 267 HIS NE2 HE2 sing N N 268 HIS OXT HXT sing N N 269 ILE N CA sing N N 270 ILE N H sing N N 271 ILE N H2 sing N N 272 ILE CA C sing N N 273 ILE CA CB sing N N 274 ILE CA HA sing N N 275 ILE C O doub N N 276 ILE C OXT sing N N 277 ILE CB CG1 sing N N 278 ILE CB CG2 sing N N 279 ILE CB HB sing N N 280 ILE CG1 CD1 sing N N 281 ILE CG1 HG12 sing N N 282 ILE CG1 HG13 sing N N 283 ILE CG2 HG21 sing N N 284 ILE CG2 HG22 sing N N 285 ILE CG2 HG23 sing N N 286 ILE CD1 HD11 sing N N 287 ILE CD1 HD12 sing N N 288 ILE CD1 HD13 sing N N 289 ILE OXT HXT sing N N 290 LEU N CA sing N N 291 LEU N H sing N N 292 LEU N H2 sing N N 293 LEU CA C sing N N 294 LEU CA CB sing N N 295 LEU CA HA sing N N 296 LEU C O doub N N 297 LEU C OXT sing N N 298 LEU CB CG sing N N 299 LEU CB HB2 sing N N 300 LEU CB HB3 sing N N 301 LEU CG CD1 sing N N 302 LEU CG CD2 sing N N 303 LEU CG HG sing N N 304 LEU CD1 HD11 sing N N 305 LEU CD1 HD12 sing N N 306 LEU CD1 HD13 sing N N 307 LEU CD2 HD21 sing N N 308 LEU CD2 HD22 sing N N 309 LEU CD2 HD23 sing N N 310 LEU OXT HXT sing N N 311 LYS N CA sing N N 312 LYS N H sing N N 313 LYS N H2 sing N N 314 LYS CA C sing N N 315 LYS CA CB sing N N 316 LYS CA HA sing N N 317 LYS C O doub N N 318 LYS C OXT sing N N 319 LYS CB CG sing N N 320 LYS CB HB2 sing N N 321 LYS CB HB3 sing N N 322 LYS CG CD sing N N 323 LYS CG HG2 sing N N 324 LYS CG HG3 sing N N 325 LYS CD CE sing N N 326 LYS CD HD2 sing N N 327 LYS CD HD3 sing N N 328 LYS CE NZ sing N N 329 LYS CE HE2 sing N N 330 LYS CE HE3 sing N N 331 LYS NZ HZ1 sing N N 332 LYS NZ HZ2 sing N N 333 LYS NZ HZ3 sing N N 334 LYS OXT HXT sing N N 335 MSE N CA sing N N 336 MSE N H sing N N 337 MSE N H2 sing N N 338 MSE CA C sing N N 339 MSE CA CB sing N N 340 MSE CA HA sing N N 341 MSE C O doub N N 342 MSE C OXT sing N N 343 MSE OXT HXT sing N N 344 MSE CB CG sing N N 345 MSE CB HB2 sing N N 346 MSE CB HB3 sing N N 347 MSE CG SE sing N N 348 MSE CG HG2 sing N N 349 MSE CG HG3 sing N N 350 MSE SE CE sing N N 351 MSE CE HE1 sing N N 352 MSE CE HE2 sing N N 353 MSE CE HE3 sing N N 354 PHE N CA sing N N 355 PHE N H sing N N 356 PHE N H2 sing N N 357 PHE CA C sing N N 358 PHE CA CB sing N N 359 PHE CA HA sing N N 360 PHE C O doub N N 361 PHE C OXT sing N N 362 PHE CB CG sing N N 363 PHE CB HB2 sing N N 364 PHE CB HB3 sing N N 365 PHE CG CD1 doub Y N 366 PHE CG CD2 sing Y N 367 PHE CD1 CE1 sing Y N 368 PHE CD1 HD1 sing N N 369 PHE CD2 CE2 doub Y N 370 PHE CD2 HD2 sing N N 371 PHE CE1 CZ doub Y N 372 PHE CE1 HE1 sing N N 373 PHE CE2 CZ sing Y N 374 PHE CE2 HE2 sing N N 375 PHE CZ HZ sing N N 376 PHE OXT HXT sing N N 377 PRO N CA sing N N 378 PRO N CD sing N N 379 PRO N H sing N N 380 PRO CA C sing N N 381 PRO CA CB sing N N 382 PRO CA HA sing N N 383 PRO C O doub N N 384 PRO C OXT sing N N 385 PRO CB CG sing N N 386 PRO CB HB2 sing N N 387 PRO CB HB3 sing N N 388 PRO CG CD sing N N 389 PRO CG HG2 sing N N 390 PRO CG HG3 sing N N 391 PRO CD HD2 sing N N 392 PRO CD HD3 sing N N 393 PRO OXT HXT sing N N 394 SER N CA sing N N 395 SER N H sing N N 396 SER N H2 sing N N 397 SER CA C sing N N 398 SER CA CB sing N N 399 SER CA HA sing N N 400 SER C O doub N N 401 SER C OXT sing N N 402 SER CB OG sing N N 403 SER CB HB2 sing N N 404 SER CB HB3 sing N N 405 SER OG HG sing N N 406 SER OXT HXT sing N N 407 THR N CA sing N N 408 THR N H sing N N 409 THR N H2 sing N N 410 THR CA C sing N N 411 THR CA CB sing N N 412 THR CA HA sing N N 413 THR C O doub N N 414 THR C OXT sing N N 415 THR CB OG1 sing N N 416 THR CB CG2 sing N N 417 THR CB HB sing N N 418 THR OG1 HG1 sing N N 419 THR CG2 HG21 sing N N 420 THR CG2 HG22 sing N N 421 THR CG2 HG23 sing N N 422 THR OXT HXT sing N N 423 TRP N CA sing N N 424 TRP N H sing N N 425 TRP N H2 sing N N 426 TRP CA C sing N N 427 TRP CA CB sing N N 428 TRP CA HA sing N N 429 TRP C O doub N N 430 TRP C OXT sing N N 431 TRP CB CG sing N N 432 TRP CB HB2 sing N N 433 TRP CB HB3 sing N N 434 TRP CG CD1 doub Y N 435 TRP CG CD2 sing Y N 436 TRP CD1 NE1 sing Y N 437 TRP CD1 HD1 sing N N 438 TRP CD2 CE2 doub Y N 439 TRP CD2 CE3 sing Y N 440 TRP NE1 CE2 sing Y N 441 TRP NE1 HE1 sing N N 442 TRP CE2 CZ2 sing Y N 443 TRP CE3 CZ3 doub Y N 444 TRP CE3 HE3 sing N N 445 TRP CZ2 CH2 doub Y N 446 TRP CZ2 HZ2 sing N N 447 TRP CZ3 CH2 sing Y N 448 TRP CZ3 HZ3 sing N N 449 TRP CH2 HH2 sing N N 450 TRP OXT HXT sing N N 451 TYR N CA sing N N 452 TYR N H sing N N 453 TYR N H2 sing N N 454 TYR CA C sing N N 455 TYR CA CB sing N N 456 TYR CA HA sing N N 457 TYR C O doub N N 458 TYR C OXT sing N N 459 TYR CB CG sing N N 460 TYR CB HB2 sing N N 461 TYR CB HB3 sing N N 462 TYR CG CD1 doub Y N 463 TYR CG CD2 sing Y N 464 TYR CD1 CE1 sing Y N 465 TYR CD1 HD1 sing N N 466 TYR CD2 CE2 doub Y N 467 TYR CD2 HD2 sing N N 468 TYR CE1 CZ doub Y N 469 TYR CE1 HE1 sing N N 470 TYR CE2 CZ sing Y N 471 TYR CE2 HE2 sing N N 472 TYR CZ OH sing N N 473 TYR OH HH sing N N 474 TYR OXT HXT sing N N 475 VAL N CA sing N N 476 VAL N H sing N N 477 VAL N H2 sing N N 478 VAL CA C sing N N 479 VAL CA CB sing N N 480 VAL CA HA sing N N 481 VAL C O doub N N 482 VAL C OXT sing N N 483 VAL CB CG1 sing N N 484 VAL CB CG2 sing N N 485 VAL CB HB sing N N 486 VAL CG1 HG11 sing N N 487 VAL CG1 HG12 sing N N 488 VAL CG1 HG13 sing N N 489 VAL CG2 HG21 sing N N 490 VAL CG2 HG22 sing N N 491 VAL CG2 HG23 sing N N 492 VAL OXT HXT sing N N 493 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7VP1 'double helix' 7VP1 'a-form double helix' 7VP1 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 2 1_555 D DA 12 1_555 0.104 -0.168 -0.042 2.305 -2.357 9.087 1 C_DT2:DA12_D C 2 ? D 12 ? 20 1 1 C DG 3 1_555 D DC 11 1_555 -0.407 -0.066 0.588 -3.411 -13.508 1.272 2 C_DG3:DC11_D C 3 ? D 11 ? 19 1 1 C DT 4 1_555 D DA 10 1_555 -0.306 0.042 0.654 -13.602 -21.256 9.038 3 C_DT4:DA10_D C 4 ? D 10 ? 20 1 1 C DG 5 1_555 D DC 9 1_555 -0.492 -0.302 0.252 -1.202 -0.189 -4.919 4 C_DG5:DC9_D C 5 ? D 9 ? 19 1 1 C DG 6 1_555 D DC 8 1_555 0.156 -0.151 0.057 3.237 -10.851 -2.341 5 C_DG6:DC8_D C 6 ? D 8 ? 19 1 1 C DT 7 1_555 D DA 7 1_555 -0.307 -0.164 0.132 4.103 -14.443 2.443 6 C_DT7:DA7_D C 7 ? D 7 ? 20 1 1 C DC 8 1_555 D DG 6 1_555 1.419 -0.370 0.797 -15.542 -10.145 2.402 7 C_DC8:DG6_D C 8 ? D 6 ? 19 1 1 C DC 9 1_555 D DG 5 1_555 0.204 -0.060 -0.185 0.971 -8.143 -9.714 8 C_DC9:DG5_D C 9 ? D 5 ? 19 1 1 C DC 10 1_555 D DG 4 1_555 0.349 -0.065 0.485 -8.751 -6.252 3.174 9 C_DC10:DG4_D C 10 ? D 4 ? 19 1 1 C DC 11 1_555 D DG 3 1_555 0.337 -0.212 0.582 -0.385 -13.388 -2.805 10 C_DC11:DG3_D C 11 ? D 3 ? 19 1 1 C DC 12 1_555 D DG 2 1_555 0.217 -0.089 -0.173 15.656 -13.826 0.147 11 C_DC12:DG2_D C 12 ? D 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 2 1_555 D DA 12 1_555 C DG 3 1_555 D DC 11 1_555 0.113 -0.805 3.344 -4.684 -1.052 31.862 -1.259 -1.059 3.318 -1.902 8.472 32.213 1 CC_DT2DG3:DC11DA12_DD C 2 ? D 12 ? C 3 ? D 11 ? 1 C DG 3 1_555 D DC 11 1_555 C DT 4 1_555 D DA 10 1_555 -0.066 -1.210 3.448 4.126 3.614 36.402 -2.426 0.685 3.290 5.745 -6.558 36.799 2 CC_DG3DT4:DA10DC11_DD C 3 ? D 11 ? C 4 ? D 10 ? 1 C DT 4 1_555 D DA 10 1_555 C DG 5 1_555 D DC 9 1_555 -0.699 -0.265 3.076 3.603 7.774 29.150 -1.941 2.000 2.809 15.041 -6.971 30.357 3 CC_DT4DG5:DC9DA10_DD C 4 ? D 10 ? C 5 ? D 9 ? 1 C DG 5 1_555 D DC 9 1_555 C DG 6 1_555 D DC 8 1_555 1.122 -0.367 3.181 4.648 6.052 35.464 -1.427 -1.160 3.194 9.795 -7.523 36.250 4 CC_DG5DG6:DC8DC9_DD C 5 ? D 9 ? C 6 ? D 8 ? 1 C DG 6 1_555 D DC 8 1_555 C DT 7 1_555 D DA 7 1_555 0.419 -1.077 3.204 1.731 3.813 27.409 -3.134 -0.473 3.049 7.987 -3.626 27.721 5 CC_DG6DT7:DA7DC8_DD C 6 ? D 8 ? C 7 ? D 7 ? 1 C DT 7 1_555 D DA 7 1_555 C DC 8 1_555 D DG 6 1_555 -0.592 -0.279 3.849 -7.225 -5.148 49.443 0.113 0.077 3.902 -6.098 8.558 50.183 6 CC_DT7DC8:DG6DA7_DD C 7 ? D 7 ? C 8 ? D 6 ? 1 C DC 8 1_555 D DG 6 1_555 C DC 9 1_555 D DG 5 1_555 -0.457 -0.656 2.769 9.611 4.579 22.144 -2.676 3.452 2.204 11.133 -23.366 24.542 7 CC_DC8DC9:DG5DG6_DD C 8 ? D 6 ? C 9 ? D 5 ? 1 C DC 9 1_555 D DG 5 1_555 C DC 10 1_555 D DG 4 1_555 1.262 -0.951 3.508 -2.577 1.371 39.808 -1.561 -2.162 3.390 2.010 3.779 39.910 8 CC_DC9DC10:DG4DG5_DD C 9 ? D 5 ? C 10 ? D 4 ? 1 C DC 10 1_555 D DG 4 1_555 C DC 11 1_555 D DG 3 1_555 -0.540 -1.168 3.185 -3.604 0.497 31.959 -2.195 0.343 3.207 0.899 6.519 32.160 9 CC_DC10DC11:DG3DG4_DD C 10 ? D 4 ? C 11 ? D 3 ? 1 C DC 11 1_555 D DG 3 1_555 C DC 12 1_555 D DG 2 1_555 -0.747 -1.968 2.870 2.168 6.625 26.267 -5.518 2.024 2.247 14.262 -4.668 27.161 10 CC_DC11DC12:DG2DG3_DD C 11 ? D 3 ? C 12 ? D 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, China)' China 31670740 1 'National Science Foundation (NSF, China)' China 31270803 2 # _atom_sites.entry_id 7VP1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014679 _atom_sites.fract_transf_matrix[1][2] 0.008475 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016950 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004743 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P SE # loop_ # loop_ #