HEADER IMMUNE SYSTEM 25-OCT-21 7VS2 TITLE SECRETED FUNGAL EFFECTOR PROTEIN MOERS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOERS1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE; SOURCE 3 ORGANISM_COMMON: RICE BLAST FUNGUS, PYRICULARIA ORYZAE; SOURCE 4 ORGANISM_TAXID: 318829; SOURCE 5 GENE: POMZ_03957; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EFFECTOR, HOST IMMUNITY, MAGNAPORTHE ORYZAE, RICE BLAST CONTROL, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.F.WANG,W.M.XING REVDAT 3 09-OCT-24 7VS2 1 REMARK REVDAT 2 13-MAR-24 7VS2 1 JRNL REVDAT 1 02-AUG-23 7VS2 0 JRNL AUTH M.LIU,F.WANG,B.HE,J.HU,Y.DAI,W.CHEN,M.YI,H.ZHANG,Y.YE,Z.CUI, JRNL AUTH 2 X.ZHENG,P.WANG,W.XING,Z.ZHANG JRNL TITL TARGETING MAGNAPORTHE ORYZAE EFFECTOR MOERS1 AND HOST JRNL TITL 2 PAPAIN-LIKE PROTEASE OSRD21 INTERACTION TO COMBAT RICE JRNL TITL 3 BLAST. JRNL REF NAT.PLANTS 2024 JRNL REFN ESSN 2055-0278 JRNL PMID 38409290 JRNL DOI 10.1038/S41477-024-01642-X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 12791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2300 - 4.2700 0.99 2698 151 0.1971 0.2301 REMARK 3 2 4.2700 - 3.3900 1.00 2575 138 0.2005 0.2219 REMARK 3 3 3.3900 - 2.9600 1.00 2544 149 0.2366 0.2765 REMARK 3 4 2.9600 - 2.6900 0.91 2293 131 0.2414 0.2746 REMARK 3 5 2.6900 - 2.5000 0.80 2012 100 0.2699 0.3355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300025292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M ZINC ACETATE DIHYDRATE, 20%PEG REMARK 280 3,350, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.78400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.54050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.54050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.67600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.54050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.54050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.89200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.54050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.54050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.67600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.54050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.54050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.89200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.78400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 399 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 350 O HOH A 405 1.87 REMARK 500 NH2 ARG A 124 O HOH A 301 1.95 REMARK 500 O HOH A 393 O HOH A 416 1.96 REMARK 500 O HOH A 335 O HOH A 401 2.00 REMARK 500 O HOH A 340 O HOH A 417 2.07 REMARK 500 O HOH A 375 O HOH A 412 2.11 REMARK 500 O HOH A 391 O HOH A 408 2.16 REMARK 500 O HOH A 410 O HOH A 418 2.17 REMARK 500 O HOH A 398 O HOH A 415 2.17 REMARK 500 O HOH A 357 O HOH A 406 2.18 REMARK 500 O HOH A 411 O HOH A 420 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 319 O HOH A 319 8665 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 40.05 -107.79 REMARK 500 ALA A 86 -165.92 -163.67 REMARK 500 ALA A 88 -166.84 -163.12 REMARK 500 PRO A 107 -9.82 -58.07 REMARK 500 GLU A 111 -159.38 -80.39 REMARK 500 HIS A 145 -169.24 -175.36 REMARK 500 ASP A 168 149.59 -171.46 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7VS2 A 21 211 UNP A0A4P7N8F7_MAGOR DBREF2 7VS2 A A0A4P7N8F7 21 211 SEQADV 7VS2 ARG A 212 UNP A0A4P7N8F EXPRESSION TAG SEQADV 7VS2 ALA A 213 UNP A0A4P7N8F EXPRESSION TAG SEQADV 7VS2 ALA A 214 UNP A0A4P7N8F EXPRESSION TAG SEQRES 1 A 194 MET PRO SER THR LEU GLU ALA ARG ALA LEU PRO GLN VAL SEQRES 2 A 194 SER ALA VAL ALA LYS PRO ARG ALA CYS SER SER TYR PRO SEQRES 3 A 194 THR PHE ASP PRO ALA THR GLY GLU ALA THR GLU PHE ILE SEQRES 4 A 194 PHE TYR ALA ASP SER THR GLU GLU PRO VAL ALA PRO PHE SEQRES 5 A 194 ALA GLY SER VAL VAL GLY LYS LEU ALA ASN PRO ASN LEU SEQRES 6 A 194 ALA ILE ALA ARG ILE GLY ILE ALA VAL ARG GLY ASP LEU SEQRES 7 A 194 ALA LYS VAL VAL THR LYS CYS PHE PRO ASP GLY GLY GLU SEQRES 8 A 194 GLU GLY LEU ARG THR ARG THR HIS GLY ASP TRP ARG ARG SEQRES 9 A 194 LEU THR LEU ALA GLY GLY GLU ASP GLU ASN ILE ILE LEU SEQRES 10 A 194 ILE GLY GLN GLY PRO VAL ALA HIS ARG PRO LEU THR PRO SEQRES 11 A 194 HIS ASP HIS PHE PHE ALA ASN GLY THR GLN GLN PRO GLY SEQRES 12 A 194 VAL PHE MET GLY ASP ASN GLY SER THR THR TRP ALA PHE SEQRES 13 A 194 SER ARG LYS ASP ALA SER ALA SER GLU PRO PHE ASP GLN SEQRES 14 A 194 TYR GLU ILE ARG LEU LEU LYS SER ALA ASP SER PRO LEU SEQRES 15 A 194 ARG ASN GLY GLU PHE ARG GLY PHE VAL ARG ALA ALA FORMUL 2 HOH *122(H2 O) HELIX 1 AA1 ALA A 41 TYR A 45 5 5 SHEET 1 AA1 3 SER A 34 ALA A 37 0 SHEET 2 AA1 3 THR A 149 PHE A 154 -1 O ASP A 152 N VAL A 36 SHEET 3 AA1 3 GLN A 160 GLY A 167 -1 O GLY A 167 N THR A 149 SHEET 1 AA211 SER A 75 GLY A 78 0 SHEET 2 AA211 ALA A 88 ALA A 93 -1 O GLY A 91 N VAL A 76 SHEET 3 AA211 GLN A 189 LEU A 194 -1 O TYR A 190 N ILE A 92 SHEET 4 AA211 TRP A 174 LYS A 179 -1 N SER A 177 O GLU A 191 SHEET 5 AA211 PHE A 207 ALA A 214 -1 O PHE A 207 N PHE A 176 SHEET 6 AA211 ALA A 55 ASP A 63 -1 N TYR A 61 O ARG A 212 SHEET 7 AA211 THR A 103 PHE A 106 -1 O THR A 103 N PHE A 58 SHEET 8 AA211 GLY A 113 THR A 118 -1 O ARG A 115 N LYS A 104 SHEET 9 AA211 ASP A 121 LEU A 127 -1 O ARG A 123 N THR A 116 SHEET 10 AA211 ILE A 136 ILE A 138 -1 O LEU A 137 N THR A 126 SHEET 11 AA211 ALA A 88 ALA A 93 -1 N ALA A 88 O ILE A 138 SSBOND 1 CYS A 42 CYS A 105 1555 1555 2.04 CRYST1 105.081 105.081 67.568 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014800 0.00000 CONECT 130 598 CONECT 598 130 MASTER 289 0 0 1 14 0 0 6 1564 1 2 15 END