HEADER HYDROLASE 01-NOV-21 7VU8 TITLE L7-TIR DOMAIN WITH BOUND LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAX RUST RESISTANCE PROTEIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LINUM USITATISSIMUM; SOURCE 3 ORGANISM_COMMON: FLAX, LINUM HUMILE; SOURCE 4 ORGANISM_TAXID: 4006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEIC ACID HYDROLYSIS COMPLEX, HYDROLASE EXPDTA ELECTRON MICROSCOPY AUTHOR Y.TAN,C.XU,D.YU,W.SONG,B.WU,P.SCHULZE-LEFERT,J.CHAI REVDAT 4 26-JUN-24 7VU8 1 REMARK REVDAT 3 06-JUL-22 7VU8 1 JRNL REVDAT 2 08-JUN-22 7VU8 1 JRNL REVDAT 1 01-JUN-22 7VU8 0 JRNL AUTH D.YU,W.SONG,E.Y.J.TAN,L.LIU,Y.CAO,J.JIRSCHITZKA,E.LI, JRNL AUTH 2 E.LOGEMANN,C.XU,S.HUANG,A.JIA,X.CHANG,Z.HAN,B.WU, JRNL AUTH 3 P.SCHULZE-LEFERT,J.CHAI JRNL TITL TIR DOMAINS OF PLANT IMMUNE RECEPTORS ARE 2',3'-CAMP/CGMP JRNL TITL 2 SYNTHETASES MEDIATING CELL DEATH. JRNL REF CELL V. 185 2370 2022 JRNL REFN ISSN 1097-4172 JRNL PMID 35597242 JRNL DOI 10.1016/J.CELL.2022.04.032 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, PHENIX, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : BACKBONE TRACE REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 146.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 91302 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: PHENIX REAL SPACE REFINEMENT, BASED ON D99 CUT OFF REMARK 3 VALUE OF 0.143. REMARK 4 REMARK 4 7VU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025397. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ONE CENTRALLY LOCATED TIR REMARK 245 DOMAIN WITHIN THE COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10637 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 27 REMARK 465 SER B 28 REMARK 465 LYS B 29 REMARK 465 ASP B 30 REMARK 465 SER B 31 REMARK 465 ILE B 32 REMARK 465 VAL B 33 REMARK 465 ASN B 34 REMARK 465 ASP B 35 REMARK 465 ASP B 36 REMARK 465 ASP B 37 REMARK 465 ASP B 38 REMARK 465 SER B 39 REMARK 465 THR B 40 REMARK 465 SER B 41 REMARK 465 GLU B 42 REMARK 465 VAL B 43 REMARK 465 ASP B 44 REMARK 465 ALA B 45 REMARK 465 ILE B 46 REMARK 465 PRO B 47 REMARK 465 ASP B 48 REMARK 465 SER B 49 REMARK 465 THR B 50 REMARK 465 ASN B 51 REMARK 465 PRO B 52 REMARK 465 SER B 53 REMARK 465 GLY B 54 REMARK 465 SER B 55 REMARK 465 PHE B 56 REMARK 465 PRO B 57 REMARK 465 SER B 58 REMARK 465 ASN B 229 REMARK 465 LEU B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 66 132.05 -173.06 REMARK 500 ASP B 71 -63.79 -94.53 REMARK 500 GLN B 75 -73.80 -82.49 REMARK 500 LEU B 98 -123.68 58.25 REMARK 500 ASN B 107 -76.98 -98.42 REMARK 500 PRO B 147 21.78 -78.28 REMARK 500 PRO B 160 31.90 -84.52 REMARK 500 GLN B 166 17.62 55.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-32126 RELATED DB: EMDB DBREF 7VU8 B 27 230 UNP Q9XEH4 Q9XEH4_LINUS 27 230 SEQADV 7VU8 GLY B 197 UNP Q9XEH4 GLU 197 ENGINEERED MUTATION SEQRES 1 B 204 ASN SER LYS ASP SER ILE VAL ASN ASP ASP ASP ASP SER SEQRES 2 B 204 THR SER GLU VAL ASP ALA ILE PRO ASP SER THR ASN PRO SEQRES 3 B 204 SER GLY SER PHE PRO SER VAL GLU TYR ASP VAL PHE LEU SEQRES 4 B 204 SER PHE ARG GLY PRO ASP THR ARG LYS GLN PHE THR ASP SEQRES 5 B 204 PHE LEU TYR HIS PHE LEU CYS TYR TYR LYS ILE HIS THR SEQRES 6 B 204 PHE ARG ASP ASP ASP GLU LEU ARG LYS GLY LYS GLU ILE SEQRES 7 B 204 GLY PRO ASN LEU LEU ARG ALA ILE ASP GLN SER LYS ILE SEQRES 8 B 204 TYR VAL PRO ILE ILE SER SER GLY TYR ALA ASP SER LYS SEQRES 9 B 204 TRP CYS LEU MET GLU LEU ALA GLU ILE VAL ARG ARG GLN SEQRES 10 B 204 GLU GLU ASP PRO ARG ARG ILE ILE LEU PRO ILE PHE TYR SEQRES 11 B 204 MET VAL ASP PRO SER ASP VAL ARG HIS GLN THR GLY CYS SEQRES 12 B 204 TYR LYS LYS ALA PHE ARG LYS HIS ALA ASN LYS PHE ASP SEQRES 13 B 204 GLY GLN THR ILE GLN ASN TRP LYS ASP ALA LEU LYS LYS SEQRES 14 B 204 VAL GLY ASP LEU LYS GLY TRP HIS ILE GLY LYS ASP ASP SEQRES 15 B 204 GLU GLN GLY ALA ILE ALA ASP LYS VAL SER ALA ASP ILE SEQRES 16 B 204 TRP SER HIS ILE SER LYS GLU ASN LEU HET ACK B 301 22 HETNAM ACK 2',3'- CYCLIC AMP FORMUL 2 ACK C10 H12 N5 O6 P HELIX 1 AA1 ARG B 68 ARG B 73 1 6 HELIX 2 AA2 PHE B 76 TYR B 86 1 11 HELIX 3 AA3 ASN B 107 SER B 115 1 9 HELIX 4 AA4 SER B 129 ASP B 146 1 18 HELIX 5 AA5 TYR B 170 HIS B 177 1 8 HELIX 6 AA6 ALA B 178 LYS B 180 5 3 HELIX 7 AA7 GLN B 184 GLY B 197 1 14 HELIX 8 AA8 GLY B 211 LYS B 227 1 17 SHEET 1 AA1 3 VAL B 63 SER B 66 0 SHEET 2 AA1 3 ILE B 117 PRO B 120 1 O VAL B 119 N PHE B 64 SHEET 3 AA1 3 ILE B 150 ILE B 151 1 O ILE B 150 N TYR B 118 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000