HEADER PLANT PROTEIN 02-NOV-21 7VUD TITLE CAROTENOID CLEAVAGE DIOXYGENASE 1 FROM OSMANTHUS FRAGRANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAROTENOID CLEAVAGE DIOXYGENASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSMANTHUS FRAGRANS; SOURCE 3 ORGANISM_TAXID: 93977; SOURCE 4 GENE: CCD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS CAROTENOID CLEAVAGE DIOXYGENASE 1 (CCD1), LYCOPENE, IONONE, PSI- KEYWDS 2 IONONE, PSEUDO-IONONE., PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SHARMA,B.XUE REVDAT 2 29-NOV-23 7VUD 1 REMARK REVDAT 1 02-NOV-22 7VUD 0 JRNL AUTH D.SHARMA,B.XUE JRNL TITL CAROTENOID CLEAVAGE DIOXYGENASE 1 FROM OSMANTHUS FRAGRANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.003 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.469 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4453 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4236 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6026 ; 1.451 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9782 ; 1.390 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 7.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;34.310 ;22.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 753 ;22.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4933 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1003 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 805 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 109 ; 0.443 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2117 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2139 ; 1.922 ; 6.199 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2138 ; 1.923 ; 6.198 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2672 ; 3.181 ; 9.304 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2673 ; 3.181 ; 9.305 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2313 ; 2.355 ; 6.489 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2306 ; 2.340 ; 6.474 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3354 ; 3.795 ; 9.638 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3343 ; 3.827 ; 9.614 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7VUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300022519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 98.15 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39479 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 81.00 REMARK 200 R MERGE (I) : 0.01480 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 7.5, 1.5M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 104.97050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.97050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 104.97050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.97050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 104.97050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 104.97050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 104.97050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 104.97050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 104.97050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 104.97050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 104.97050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 104.97050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 104.97050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 104.97050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 104.97050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 104.97050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 104.97050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 104.97050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 157.45575 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 52.48525 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 52.48525 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 157.45575 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 157.45575 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 157.45575 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 52.48525 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 52.48525 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 157.45575 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.48525 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 157.45575 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 52.48525 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 157.45575 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 52.48525 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 52.48525 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 52.48525 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 157.45575 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 52.48525 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 157.45575 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 157.45575 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 157.45575 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 52.48525 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 52.48525 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 157.45575 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 157.45575 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 52.48525 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 52.48525 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 52.48525 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 52.48525 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 157.45575 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 52.48525 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 157.45575 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 52.48525 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 157.45575 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 157.45575 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 157.45575 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 541 REMARK 465 VAL A 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 337 NI NI A 604 1.15 REMARK 500 HE2 HIS A 271 NI NI A 604 1.17 REMARK 500 HE2 HIS A 223 NI NI A 604 1.24 REMARK 500 HE2 HIS A 218 HE ARG A 248 1.26 REMARK 500 H GLN A 122 HG1 THR A 206 1.34 REMARK 500 HE2 HIS A 527 NI NI A 604 1.51 REMARK 500 HH12 ARG A 108 OE2 GLU A 533 1.52 REMARK 500 HZ2 LYS A 433 OD1 ASP A 482 1.55 REMARK 500 H THR A 263 OE2 GLU A 322 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 387 C11 OXN A 603 16545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 495 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 39 -23.97 68.80 REMARK 500 ASP A 42 94.67 68.51 REMARK 500 ASN A 86 75.84 -169.62 REMARK 500 GLN A 122 97.04 -60.59 REMARK 500 MET A 136 -49.52 -140.66 REMARK 500 THR A 276 -168.15 -109.50 REMARK 500 LYS A 290 74.40 -114.61 REMARK 500 ASN A 357 68.98 -158.02 REMARK 500 VAL A 367 -46.87 57.83 REMARK 500 LYS A 368 -125.11 46.93 REMARK 500 ALA A 399 43.06 103.84 REMARK 500 THR A 411 -2.72 73.93 REMARK 500 ILE A 425 -51.78 69.40 REMARK 500 ALA A 426 38.50 -146.88 REMARK 500 LYS A 444 143.24 56.72 REMARK 500 PHE A 526 -97.41 -91.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OXN A 601 REMARK 610 OXN A 602 REMARK 610 OXN A 603 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 604 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 271 NE2 85.6 REMARK 620 3 HIS A 337 NE2 92.9 98.1 REMARK 620 4 HIS A 527 NE2 101.7 165.6 93.9 REMARK 620 5 HOH A 701 O 156.9 78.3 105.5 91.0 REMARK 620 N 1 2 3 4 DBREF 7VUD A 0 542 UNP D4QE74 D4QE74_9LAMI 1 543 SEQADV 7VUD HIS A -16 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -15 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -14 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -13 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -12 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -11 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -10 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD HIS A -9 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD LEU A -8 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD GLU A -7 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD VAL A -6 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD LEU A -5 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD PHE A -4 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD GLN A -3 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD GLY A -2 UNP D4QE74 EXPRESSION TAG SEQADV 7VUD PRO A -1 UNP D4QE74 EXPRESSION TAG SEQRES 1 A 559 HIS HIS HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE SEQRES 2 A 559 GLN GLY PRO MET GLY MET GLN GLY GLU ASP ALA GLN ARG SEQRES 3 A 559 THR GLY ASN ILE VAL ALA VAL LYS PRO LYS PRO SER GLN SEQRES 4 A 559 GLY LEU THR SER LYS ALA ILE ASP TRP LEU GLU TRP LEU SEQRES 5 A 559 PHE VAL LYS MET MET HIS ASP SER LYS GLN PRO LEU HIS SEQRES 6 A 559 TYR LEU SER GLY ASN PHE ALA PRO VAL ASP GLU THR PRO SEQRES 7 A 559 PRO LEU LYS ASP LEU PRO VAL THR GLY HIS LEU PRO GLU SEQRES 8 A 559 CYS LEU ASN GLY GLU PHE VAL ARG VAL GLY PRO ASN PRO SEQRES 9 A 559 LYS PHE ALA SER ILE ALA GLY TYR HIS TRP PHE ASP GLY SEQRES 10 A 559 ASP GLY MET ILE HIS GLY MET ARG ILE LYS ASP GLY LYS SEQRES 11 A 559 ALA THR TYR VAL SER ARG TYR VAL GLN THR SER ARG LEU SEQRES 12 A 559 LYS GLN GLU GLU PHE PHE GLY ARG ALA MET PHE MET LYS SEQRES 13 A 559 ILE GLY ASP LEU LYS GLY MET PHE GLY LEU LEU MET VAL SEQRES 14 A 559 ASN MET GLN MET LEU ARG ALA LYS LEU LYS VAL LEU ASP SEQRES 15 A 559 ILE SER TYR GLY ILE GLY THR ALA ASN THR ALA LEU VAL SEQRES 16 A 559 TYR HIS HIS GLY LYS LEU LEU ALA LEU SER GLU ALA ASP SEQRES 17 A 559 LYS PRO TYR ALA ILE LYS VAL LEU GLU ASP GLY ASP LEU SEQRES 18 A 559 GLN THR ILE GLY LEU LEU ASP TYR ASP LYS ARG LEU ALA SEQRES 19 A 559 HIS SER PHE THR ALA HIS PRO LYS VAL ASP PRO PHE THR SEQRES 20 A 559 GLY GLU MET PHE THR PHE GLY TYR SER HIS THR PRO PRO SEQRES 21 A 559 TYR VAL THR TYR ARG VAL ILE SER LYS ASP GLY ALA MET SEQRES 22 A 559 ASN ASP PRO VAL PRO ILE THR VAL SER GLY PRO ILE MET SEQRES 23 A 559 MET HIS ASP PHE ALA ILE THR GLU ASN TYR ALA ILE PHE SEQRES 24 A 559 MET ASP LEU PRO LEU TYR PHE LYS PRO LYS GLU MET VAL SEQRES 25 A 559 LYS ASP LYS LYS PHE ILE PHE SER PHE ASP ALA THR GLN SEQRES 26 A 559 LYS ALA ARG PHE GLY ILE LEU PRO ARG TYR ALA LYS ASN SEQRES 27 A 559 GLU LEU LEU ILE LYS TRP PHE GLU LEU PRO ASN CYS PHE SEQRES 28 A 559 ILE PHE HIS ASN ALA ASN ALA TRP GLU GLU GLY ASP GLU SEQRES 29 A 559 VAL VAL LEU ILE THR CYS ARG LEU GLU ASN PRO ASP LEU SEQRES 30 A 559 ASP MET VAL ASN SER THR VAL LYS GLU ARG LEU ASP ASN SEQRES 31 A 559 PHE LYS ASN GLU LEU TYR GLU MET ARG PHE ASN LEU GLN SEQRES 32 A 559 ASN GLY LEU ALA SER GLN LYS LYS LEU SER VAL SER ALA SEQRES 33 A 559 VAL ASP PHE PRO ARG VAL ASN GLU SER TYR THR THR ARG SEQRES 34 A 559 LYS GLN ARG TYR VAL TYR GLY THR THR LEU ASP LYS ILE SEQRES 35 A 559 ALA LYS VAL THR GLY ILE ILE LYS PHE ASP LEU HIS ALA SEQRES 36 A 559 GLU PRO GLU THR GLY LYS GLU LYS LEU GLU LEU GLY GLY SEQRES 37 A 559 ASN VAL LYS GLY ILE PHE ASP LEU GLY PRO GLY ARG PHE SEQRES 38 A 559 GLY SER GLU ALA VAL PHE VAL PRO ARG HIS PRO GLY ILE SEQRES 39 A 559 THR SER GLU GLU ASP ASP GLY TYR LEU ILE PHE PHE VAL SEQRES 40 A 559 HIS ASP GLU ASN THR GLY LYS SER ALA VAL ASN VAL ILE SEQRES 41 A 559 ASP ALA LYS THR MET SER PRO ASP PRO VAL ALA VAL VAL SEQRES 42 A 559 GLU LEU PRO LYS ARG VAL PRO TYR GLY PHE HIS ALA PHE SEQRES 43 A 559 PHE VAL THR GLU ASP GLN LEU GLN GLU GLN ALA LYS VAL HET OXN A 601 57 HET OXN A 602 57 HET OXN A 603 57 HET NI A 604 1 HET SO4 A 605 5 HET SO4 A 606 5 HETNAM OXN OXTOXYNOL-10 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETSYN OXN ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA- HETSYN 2 OXN HYDROXYPOLY(OXY-1,2-ETHANEDIYL); TRITON X-100 FORMUL 2 OXN 3(C34 H62 O11) FORMUL 5 NI NI 2+ FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *18(H2 O) HELIX 1 AA1 GLY A 23 LYS A 38 1 16 HELIX 2 AA2 LEU A 47 ALA A 55 5 9 HELIX 3 AA3 PRO A 73 LEU A 76 5 4 HELIX 4 AA4 HIS A 96 GLY A 100 5 5 HELIX 5 AA5 THR A 123 GLY A 133 1 11 HELIX 6 AA6 LYS A 139 LEU A 143 5 5 HELIX 7 AA7 LYS A 144 LEU A 161 1 18 HELIX 8 AA8 LYS A 290 ASP A 297 1 8 HELIX 9 AA9 ASP A 359 ASN A 364 5 6 HELIX 10 AB1 ASN A 406 THR A 410 5 5 HELIX 11 AB2 GLU A 533 ALA A 540 1 8 SHEET 1 AA1 6 ARG A 9 THR A 10 0 SHEET 2 AA1 6 ILE A 13 VAL A 14 -1 O ILE A 13 N THR A 10 SHEET 3 AA1 6 LEU A 204 LEU A 210 -1 O LEU A 209 N VAL A 14 SHEET 4 AA1 6 TYR A 194 VAL A 198 -1 N LYS A 197 O GLN A 205 SHEET 5 AA1 6 LYS A 183 LEU A 187 -1 N LEU A 184 O ILE A 196 SHEET 6 AA1 6 ALA A 176 HIS A 180 -1 N VAL A 178 O LEU A 185 SHEET 1 AA2 5 THR A 60 LEU A 63 0 SHEET 2 AA2 5 LYS A 113 TYR A 120 -1 O TYR A 116 N LEU A 63 SHEET 3 AA2 5 GLY A 102 LYS A 110 -1 N ILE A 104 O ARG A 119 SHEET 4 AA2 5 GLY A 78 PRO A 85 -1 N GLY A 78 O ILE A 109 SHEET 5 AA2 5 ALA A 528 THR A 532 -1 O VAL A 531 N GLU A 79 SHEET 1 AA3 5 THR A 69 GLY A 70 0 SHEET 2 AA3 5 ALA A 514 LEU A 518 -1 O VAL A 515 N THR A 69 SHEET 3 AA3 5 SER A 498 ASP A 504 -1 N VAL A 502 O ALA A 514 SHEET 4 AA3 5 GLY A 484 ASP A 492 -1 N VAL A 490 O ALA A 499 SHEET 5 AA3 5 ARG A 463 GLY A 465 -1 N PHE A 464 O HIS A 491 SHEET 1 AA4 5 THR A 69 GLY A 70 0 SHEET 2 AA4 5 ALA A 514 LEU A 518 -1 O VAL A 515 N THR A 69 SHEET 3 AA4 5 SER A 498 ASP A 504 -1 N VAL A 502 O ALA A 514 SHEET 4 AA4 5 GLY A 484 ASP A 492 -1 N VAL A 490 O ALA A 499 SHEET 5 AA4 5 VAL A 469 PRO A 472 -1 N VAL A 471 O TYR A 485 SHEET 1 AA5 4 LYS A 225 VAL A 226 0 SHEET 2 AA5 4 MET A 233 TYR A 238 -1 O PHE A 234 N LYS A 225 SHEET 3 AA5 4 VAL A 245 ILE A 250 -1 O ARG A 248 N THR A 235 SHEET 4 AA5 4 VAL A 260 ILE A 262 -1 O ILE A 262 N VAL A 245 SHEET 1 AA6 4 ALA A 274 ILE A 275 0 SHEET 2 AA6 4 TYR A 279 ASP A 284 -1 O ILE A 281 N ALA A 274 SHEET 3 AA6 4 ALA A 310 PRO A 316 -1 O GLY A 313 N PHE A 282 SHEET 4 AA6 4 LYS A 326 LEU A 330 -1 O LYS A 326 N ILE A 314 SHEET 1 AA7 2 LEU A 287 PHE A 289 0 SHEET 2 AA7 2 PHE A 302 PHE A 304 -1 O SER A 303 N TYR A 288 SHEET 1 AA8 4 PHE A 334 GLU A 344 0 SHEET 2 AA8 4 GLU A 347 LEU A 355 -1 O VAL A 349 N TRP A 342 SHEET 3 AA8 4 GLU A 377 ASN A 384 -1 O MET A 381 N LEU A 350 SHEET 4 AA8 4 ALA A 390 LYS A 394 -1 O SER A 391 N ARG A 382 SHEET 1 AA9 4 VAL A 400 ARG A 404 0 SHEET 2 AA9 4 TYR A 416 ASP A 423 -1 O TYR A 418 N ARG A 404 SHEET 3 AA9 4 LYS A 427 ASP A 435 -1 O ILE A 432 N GLY A 419 SHEET 4 AA9 4 VAL A 453 ASP A 458 -1 O GLY A 455 N LYS A 433 LINK NE2 HIS A 223 NI NI A 604 1555 1555 2.11 LINK NE2 HIS A 271 NI NI A 604 1555 1555 2.04 LINK NE2 HIS A 337 NI NI A 604 1555 1555 2.01 LINK NE2 HIS A 527 NI NI A 604 1555 1555 2.11 LINK NI NI A 604 O HOH A 701 1555 1555 2.08 CRYST1 209.941 209.941 209.941 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004763 0.00000