HEADER HYDROLASE 06-NOV-21 7VVI TITLE OXA-58 CRYSTAL STRUCTURE OF ACYLATED MEROPENEM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: BLAOXA-58, BLA-OXA-58, BLA-OXA58; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCOLD I KEYWDS OXA, MULTI-DRUG RESISTANCE, COMPLEX, DEGRADATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAINO,T.SUGIYABU,M.MIYANO REVDAT 2 29-NOV-23 7VVI 1 REMARK REVDAT 1 23-NOV-22 7VVI 0 JRNL AUTH H.SAINO,N.OKIMOTO,T.OTSUKA,T.SUGIYABU,I.SASAKI,G.UENO, JRNL AUTH 2 M.OOUCHI,M.YAMAMOTO,K.ISHII,M.TAIJI,M.MIYANO JRNL TITL OXA-58 CRYSTAL STRUCTURE OF ACYLATED MEROPENEM COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.SAINO,T.SUGIYABU,G.UENO,M.YAMAMOTO,Y.ISHII,M.MIYANO REMARK 1 TITL CRYSTAL STRUCTURE OF OXA-58 WITH THE SUBSTRATE-BINDING CLEFT REMARK 1 TITL 2 IN A CLOSED STATE: INSIGHTS INTO THE MOBILITY AND STABILITY REMARK 1 TITL 3 OF THE OXA-58 STRUCTURE. REMARK 1 REF PLOS ONE V. 10 45869 2015 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 26701320 REMARK 1 DOI 10.1371/JOURNAL.PONE.0145869 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 99260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2900 - 3.7900 0.95 4749 181 0.1110 0.1103 REMARK 3 2 3.7900 - 3.0100 0.96 4823 188 0.1080 0.1174 REMARK 3 3 3.0100 - 2.6300 0.95 4769 210 0.1249 0.1726 REMARK 3 4 2.6300 - 2.3900 0.96 4729 194 0.1500 0.1527 REMARK 3 5 2.3900 - 2.2200 0.96 4771 205 0.1519 0.1590 REMARK 3 6 2.2200 - 2.0900 0.96 4776 197 0.1543 0.1521 REMARK 3 7 2.0900 - 1.9900 0.96 4790 205 0.1752 0.1486 REMARK 3 8 1.9900 - 1.9000 0.96 4751 201 0.1807 0.1571 REMARK 3 9 1.9000 - 1.8300 0.96 4835 200 0.1944 0.1867 REMARK 3 10 1.8300 - 1.7600 0.95 4753 208 0.2026 0.1993 REMARK 3 11 1.7600 - 1.7100 0.96 4745 196 0.2021 0.1947 REMARK 3 12 1.7100 - 1.6600 0.96 4753 199 0.1987 0.1798 REMARK 3 13 1.6600 - 1.6200 0.96 4775 200 0.2058 0.2147 REMARK 3 14 1.6200 - 1.5800 0.95 4766 206 0.2126 0.2006 REMARK 3 15 1.5800 - 1.5400 0.95 4733 199 0.2176 0.2035 REMARK 3 16 1.5400 - 1.5100 0.96 4781 197 0.2349 0.2260 REMARK 3 17 1.5100 - 1.4800 0.96 4737 193 0.2324 0.1997 REMARK 3 18 1.4800 - 1.4500 0.96 4764 196 0.2421 0.2402 REMARK 3 19 1.4500 - 1.4200 0.95 4772 205 0.2471 0.2621 REMARK 3 20 1.4200 - 1.4000 0.96 4715 193 0.2570 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1971 REMARK 3 ANGLE : 1.427 2668 REMARK 3 CHIRALITY : 0.087 287 REMARK 3 PLANARITY : 0.006 341 REMARK 3 DIHEDRAL : 16.355 764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300024170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 685938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.73420 REMARK 200 R SYM (I) : 0.79400 REMARK 200 FOR THE DATA SET : 158.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77580 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 18.01 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5BOH REMARK 200 REMARK 200 REMARK: THIN PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LISO4, HEPES-NA, MEROPENEM SOAKING, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.69000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.76033 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.84367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 37.69000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 21.76033 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.84367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 37.69000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 21.76033 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.84367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.52066 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.68733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.52066 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.68733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.52066 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.68733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 29 REMARK 465 ASN A 30 REMARK 465 HIS A 31 REMARK 465 LYS A 32 REMARK 465 VAL A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 ILE A 40 REMARK 465 GLU A 41 REMARK 465 GLY A 42 REMARK 465 ARG A 43 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 676 O HOH A 684 1.97 REMARK 500 O HOH A 474 O HOH A 637 1.98 REMARK 500 O HOH A 728 O HOH A 753 1.98 REMARK 500 O HOH A 594 O HOH A 683 1.99 REMARK 500 O HOH A 633 O HOH A 744 2.00 REMARK 500 O HOH A 533 O HOH A 640 2.00 REMARK 500 O HOH A 518 O HOH A 653 2.01 REMARK 500 O HOH A 614 O HOH A 731 2.01 REMARK 500 O HOH A 725 O HOH A 736 2.01 REMARK 500 O HOH A 708 O HOH A 732 2.02 REMARK 500 O HOH A 565 O HOH A 569 2.02 REMARK 500 O HOH A 452 O HOH A 641 2.02 REMARK 500 O HOH A 417 O HOH A 438 2.02 REMARK 500 O HOH A 535 O HOH A 669 2.02 REMARK 500 O HOH A 579 O HOH A 597 2.03 REMARK 500 O HOH A 437 O HOH A 567 2.03 REMARK 500 O HOH A 429 O HOH A 586 2.03 REMARK 500 O HOH A 559 O HOH A 686 2.04 REMARK 500 O HOH A 426 O HOH A 612 2.05 REMARK 500 O HOH A 417 O HOH A 470 2.05 REMARK 500 O HOH A 439 O HOH A 533 2.06 REMARK 500 O HOH A 559 O HOH A 704 2.06 REMARK 500 O HOH A 414 O HOH A 590 2.06 REMARK 500 O HOH A 595 O HOH A 702 2.07 REMARK 500 O HOH A 562 O HOH A 652 2.07 REMARK 500 O HOH A 596 O HOH A 697 2.08 REMARK 500 O HOH A 620 O HOH A 668 2.09 REMARK 500 O VAL A 276 O HOH A 401 2.10 REMARK 500 O HOH A 627 O HOH A 629 2.10 REMARK 500 O HOH A 646 O HOH A 730 2.10 REMARK 500 O HOH A 469 O HOH A 577 2.10 REMARK 500 O HOH A 599 O HOH A 609 2.10 REMARK 500 O HOH A 405 O HOH A 578 2.11 REMARK 500 O HOH A 500 O HOH A 681 2.11 REMARK 500 O HOH A 709 O HOH A 761 2.11 REMARK 500 O HOH A 410 O HOH A 511 2.12 REMARK 500 O HOH A 738 O HOH A 751 2.13 REMARK 500 O HOH A 616 O HOH A 666 2.13 REMARK 500 O HOH A 462 O HOH A 576 2.14 REMARK 500 NZ LYS A 240 O HOH A 402 2.15 REMARK 500 O HOH A 665 O HOH A 750 2.16 REMARK 500 O HOH A 496 O HOH A 696 2.17 REMARK 500 O HOH A 637 O HOH A 671 2.17 REMARK 500 O HOH A 633 O HOH A 646 2.17 REMARK 500 O HOH A 453 O HOH A 601 2.17 REMARK 500 O HOH A 569 O HOH A 661 2.19 REMARK 500 O HOH A 414 O HOH A 515 2.19 REMARK 500 NH2 ARG A 140 O HOH A 403 2.19 REMARK 500 O HOH A 431 O HOH A 631 2.19 REMARK 500 O HOH A 700 O HOH A 707 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 438 O HOH A 601 9764 2.00 REMARK 500 O HOH A 683 O HOH A 743 2755 2.02 REMARK 500 O HOH A 443 O HOH A 534 2755 2.03 REMARK 500 O HOH A 574 O HOH A 597 2755 2.13 REMARK 500 O HOH A 423 O HOH A 689 9764 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 34.67 -93.94 REMARK 500 GLN A 63 -34.42 -133.10 REMARK 500 ALA A 82 -129.81 46.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 753 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 762 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 763 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 764 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 765 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 766 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 770 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 771 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 773 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 774 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A 775 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 776 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 777 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 778 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 779 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH A 780 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A 781 DISTANCE = 8.73 ANGSTROMS REMARK 525 HOH A 782 DISTANCE = 8.94 ANGSTROMS DBREF 7VVI A 44 280 UNP Q2TR58 Q2TR58_ACIBA 44 280 SEQADV 7VVI MET A 29 UNP Q2TR58 INITIATING METHIONINE SEQADV 7VVI ASN A 30 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 31 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI LYS A 32 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI VAL A 33 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 34 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 35 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 36 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 37 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 38 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI HIS A 39 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI ILE A 40 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI GLU A 41 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI GLY A 42 UNP Q2TR58 EXPRESSION TAG SEQADV 7VVI ARG A 43 UNP Q2TR58 EXPRESSION TAG SEQRES 1 A 252 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 252 GLY ARG VAL GLN ALA LEU PHE ASN GLU ILE SER ALA ASP SEQRES 3 A 252 ALA VAL PHE VAL THR TYR ASP GLY GLN ASN ILE LYS LYS SEQRES 4 A 252 TYR GLY THR HIS LEU ASP ARG ALA LYS THR ALA TYR ILE SEQRES 5 A 252 PRO ALA SER THR PHE KCX ILE ALA ASN ALA LEU ILE GLY SEQRES 6 A 252 LEU GLU ASN HIS LYS ALA THR SER THR GLU ILE PHE LYS SEQRES 7 A 252 TRP ASP GLY LYS PRO ARG PHE PHE LYS ALA TRP ASP LYS SEQRES 8 A 252 ASP PHE THR LEU GLY GLU ALA MET GLN ALA SER THR VAL SEQRES 9 A 252 PRO VAL TYR GLN GLU LEU ALA ARG ARG ILE GLY PRO SER SEQRES 10 A 252 LEU MET GLN SER GLU LEU GLN ARG ILE GLY TYR GLY ASN SEQRES 11 A 252 MET GLN ILE GLY THR GLU VAL ASP GLN PHE TRP LEU LYS SEQRES 12 A 252 GLY PRO LEU THR ILE THR PRO ILE GLN GLU VAL LYS PHE SEQRES 13 A 252 VAL TYR ASP LEU ALA GLN GLY GLN LEU PRO PHE LYS PRO SEQRES 14 A 252 GLU VAL GLN GLN GLN VAL LYS GLU MET LEU TYR VAL GLU SEQRES 15 A 252 ARG ARG GLY GLU ASN ARG LEU TYR ALA LYS SER GLY TRP SEQRES 16 A 252 GLY MET ALA VAL ASP PRO GLN VAL GLY TRP TYR VAL GLY SEQRES 17 A 252 PHE VAL GLU LYS ALA ASP GLY GLN VAL VAL ALA PHE ALA SEQRES 18 A 252 LEU ASN MET GLN MET LYS ALA GLY ASP ASP ILE ALA LEU SEQRES 19 A 252 ARG LYS GLN LEU SER LEU ASP VAL LEU ASP LYS LEU GLY SEQRES 20 A 252 VAL PHE HIS TYR LEU MODRES 7VVI KCX A 86 LYS MODIFIED RESIDUE HET KCX A 86 12 HET SO4 A 301 5 HET MER A 302 26 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM MER (4R,5S)-3-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3- HETNAM 2 MER YL]SULFANYL}-5-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-4- HETNAM 3 MER METHYL-4,5-D IHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID HETSYN MER MEROPENEM, BOUND FORM FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 O4 S 2- FORMUL 3 MER C17 H27 N3 O5 S FORMUL 4 HOH *382(H2 O) HELIX 1 AA1 VAL A 44 ASN A 49 1 6 HELIX 2 AA2 HIS A 71 THR A 77 5 7 HELIX 3 AA3 PRO A 81 SER A 83 5 3 HELIX 4 AA4 THR A 84 ASN A 96 1 13 HELIX 5 AA5 PHE A 114 ASP A 118 5 5 HELIX 6 AA6 THR A 122 SER A 130 1 9 HELIX 7 AA7 THR A 131 GLY A 143 1 13 HELIX 8 AA8 GLY A 143 GLY A 155 1 13 HELIX 9 AA9 GLN A 167 GLY A 172 1 6 HELIX 10 AB1 THR A 177 GLY A 191 1 15 HELIX 11 AB2 LYS A 196 LEU A 207 1 12 HELIX 12 AB3 ALA A 261 LEU A 274 1 14 SHEET 1 AA1 6 ILE A 65 GLY A 69 0 SHEET 2 AA1 6 ALA A 55 TYR A 60 -1 N PHE A 57 O TYR A 68 SHEET 3 AA1 6 VAL A 245 MET A 254 -1 O ALA A 247 N TYR A 60 SHEET 4 AA1 6 GLN A 230 GLU A 239 -1 N GLY A 232 O MET A 252 SHEET 5 AA1 6 ASN A 215 GLY A 224 -1 N GLY A 222 O TRP A 233 SHEET 6 AA1 6 TYR A 208 ARG A 212 -1 N GLU A 210 O LEU A 217 LINK OG SER A 83 C1 MER A 302 1555 1555 1.36 LINK C PHE A 85 N KCX A 86 1555 1555 1.33 LINK C KCX A 86 N ILE A 87 1555 1555 1.34 CISPEP 1 GLY A 172 PRO A 173 0 6.34 CISPEP 2 ASP A 228 PRO A 229 0 2.25 CRYST1 75.380 75.380 119.531 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013266 0.007659 0.000000 0.00000 SCALE2 0.000000 0.015318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008366 0.00000