HEADER LYASE 23-NOV-21 7W2A TITLE GLIADINASE BGA1903 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLADIOLI PV. GLADIOLI; SOURCE 3 ORGANISM_TAXID: 32009 KEYWDS SERINE PROTEASE, CELIAC DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MENG REVDAT 3 29-NOV-23 7W2A 1 REMARK REVDAT 2 21-JUN-23 7W2A 1 JRNL REVDAT 1 07-DEC-22 7W2A 0 JRNL AUTH Y.Y.LIU,I.C.LIN,P.C.CHEN,C.C.LEE,M.MENG JRNL TITL CRYSTAL STRUCTURE OF A BURKHOLDERIA PEPTIDASE AND JRNL TITL 2 MODIFICATION OF THE SUBSTRATE-BINDING SITE FOR ENHANCED JRNL TITL 3 HYDROLYTIC ACTIVITY TOWARD GLUTEN-DERIVED PRO-IMMUNOGENIC JRNL TITL 4 PEPTIDES. JRNL REF INT.J.BIOL.MACROMOL. V. 222 2258 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 36209912 JRNL DOI 10.1016/J.IJBIOMAC.2022.10.016 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 111061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6000 - 3.8500 1.00 7777 140 0.1353 0.1514 REMARK 3 2 3.8500 - 3.0600 1.00 7811 146 0.1417 0.1410 REMARK 3 3 3.0600 - 2.6700 1.00 7760 149 0.1530 0.1754 REMARK 3 4 2.6700 - 2.4300 1.00 7797 140 0.1513 0.1963 REMARK 3 5 2.4300 - 2.2600 1.00 7789 152 0.1471 0.1765 REMARK 3 6 2.2600 - 2.1200 1.00 7812 142 0.1461 0.1964 REMARK 3 7 2.1200 - 2.0200 1.00 7790 148 0.1482 0.1864 REMARK 3 8 2.0200 - 1.9300 1.00 7825 142 0.1433 0.1436 REMARK 3 9 1.9300 - 1.8500 1.00 7800 134 0.1542 0.1795 REMARK 3 10 1.8500 - 1.7900 1.00 7736 138 0.1519 0.1916 REMARK 3 11 1.7900 - 1.7300 1.00 7861 140 0.1558 0.1808 REMARK 3 12 1.7300 - 1.6800 1.00 7779 146 0.1507 0.1655 REMARK 3 13 1.6800 - 1.6400 1.00 7764 140 0.1512 0.1769 REMARK 3 14 1.6400 - 1.6000 0.99 7765 138 0.1618 0.2061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5YL7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.4% (V/V) PEG8000, 80 MM REMARK 280 C2H6ASNAO2/HCL (PH6.5), 160 MM CALCIUM ACETATE, 20% (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.38600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.69300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS B 469 REMARK 465 HIS B 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 468 CA C O CB CG ND1 CD2 REMARK 470 HIS A 468 CE1 NE2 REMARK 470 HIS B 468 CA C O CB CG ND1 CD2 REMARK 470 HIS B 468 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 802 O HOH B 965 1.80 REMARK 500 O HOH A 650 O HOH A 1047 1.82 REMARK 500 O HOH A 935 O HOH A 1099 1.84 REMARK 500 NE2 GLN A 464 O HOH A 601 1.86 REMARK 500 O HOH B 967 O HOH B 1053 1.86 REMARK 500 OE1 GLN B 201 O HOH B 601 1.89 REMARK 500 O HOH B 1017 O HOH B 1032 1.90 REMARK 500 O HOH A 972 O HOH A 1028 1.91 REMARK 500 O HOH A 1061 O HOH A 1067 1.92 REMARK 500 O HOH B 914 O HOH B 961 1.94 REMARK 500 O HOH B 949 O HOH B 1035 1.95 REMARK 500 O HOH B 922 O HOH B 1125 1.98 REMARK 500 O HOH B 1077 O HOH B 1098 1.98 REMARK 500 O HOH B 991 O HOH B 1142 1.98 REMARK 500 O HOH A 603 O HOH A 982 1.98 REMARK 500 O HOH A 1054 O HOH A 1093 1.98 REMARK 500 NZ LYS A 138 O HOH A 602 2.00 REMARK 500 O HOH A 889 O HOH A 1025 2.00 REMARK 500 O HOH B 1085 O HOH B 1119 2.01 REMARK 500 O HOH B 1116 O HOH B 1132 2.02 REMARK 500 O HOH A 998 O HOH A 1074 2.03 REMARK 500 O HOH B 649 O HOH B 801 2.03 REMARK 500 O HOH B 728 O HOH B 1050 2.03 REMARK 500 O HOH A 607 O HOH A 998 2.04 REMARK 500 O HOH A 1066 O HOH A 1101 2.05 REMARK 500 O HOH B 685 O HOH B 714 2.06 REMARK 500 O HOH B 838 O HOH B 1118 2.06 REMARK 500 O HOH A 825 O HOH A 1009 2.10 REMARK 500 O HOH B 613 O HOH B 996 2.10 REMARK 500 O HOH B 885 O HOH B 1015 2.10 REMARK 500 O HOH A 893 O HOH A 960 2.10 REMARK 500 O HOH B 649 O HOH B 655 2.11 REMARK 500 O HOH A 627 O HOH A 890 2.11 REMARK 500 O HOH A 886 O HOH A 1015 2.11 REMARK 500 O HOH B 630 O HOH B 908 2.11 REMARK 500 O HOH A 869 O HOH B 997 2.12 REMARK 500 OD1 ASN A 135 O HOH A 603 2.13 REMARK 500 O HOH B 977 O HOH B 1003 2.13 REMARK 500 O HOH A 688 O HOH A 919 2.14 REMARK 500 O HOH A 976 O HOH A 1032 2.15 REMARK 500 O HOH B 981 O HOH B 986 2.15 REMARK 500 O HOH A 641 O HOH A 973 2.15 REMARK 500 O HOH A 832 O HOH A 1112 2.17 REMARK 500 NE2 GLN B 201 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 742 O HOH B 610 1545 1.96 REMARK 500 O HOH A 1010 O HOH B 908 2554 2.18 REMARK 500 O HOH A 1092 O HOH B 1120 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 155 -150.23 -165.81 REMARK 500 LEU A 164 -37.96 -143.94 REMARK 500 LEU A 382 -159.23 -150.08 REMARK 500 LYS A 387 -96.60 -126.46 REMARK 500 ALA A 390 -125.38 -130.54 REMARK 500 ASP B 155 -150.51 -165.96 REMARK 500 LEU B 164 -37.47 -145.12 REMARK 500 LEU B 382 -159.59 -150.34 REMARK 500 LYS B 387 -97.32 -126.20 REMARK 500 ALA B 390 -125.24 -131.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1156 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1157 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1158 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1169 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1170 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1171 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1172 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1173 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B1174 DISTANCE = 7.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 ASP A 163 OD1 155.6 REMARK 620 3 ASP A 163 OD2 150.8 52.0 REMARK 620 4 VAL A 240 O 95.0 84.9 99.3 REMARK 620 5 ASN A 243 OD1 73.5 82.0 132.2 87.4 REMARK 620 6 THR A 245 O 83.4 92.5 86.8 169.8 82.5 REMARK 620 7 VAL A 247 O 78.6 125.6 77.6 84.5 150.1 105.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 173 OD2 REMARK 620 2 ASP A 183 OD2 81.4 REMARK 620 3 ASP A 188 OD1 108.2 118.2 REMARK 620 4 ASP A 188 OD2 83.2 70.7 51.4 REMARK 620 5 ASN A 190 O 89.8 164.7 76.4 120.8 REMARK 620 6 HOH A 660 O 96.6 86.9 146.5 157.5 81.7 REMARK 620 7 HOH A 936 O 167.1 85.7 78.4 93.1 102.7 82.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 OD1 REMARK 620 2 ASP A 183 OD2 52.5 REMARK 620 3 ASN A 185 O 71.9 124.1 REMARK 620 4 ASN A 185 OD1 87.6 101.5 80.1 REMARK 620 5 GLY A 186 O 148.1 159.3 76.3 84.4 REMARK 620 6 ASP A 188 OD2 122.5 73.4 159.1 85.3 87.5 REMARK 620 7 HOH A 761 O 108.7 93.5 99.0 162.6 78.6 90.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 ASP B 163 OD1 155.2 REMARK 620 3 ASP B 163 OD2 151.3 52.0 REMARK 620 4 VAL B 240 O 94.5 84.7 99.5 REMARK 620 5 ASN B 243 OD1 72.9 82.4 132.6 86.6 REMARK 620 6 THR B 245 O 83.6 92.7 86.8 169.5 82.9 REMARK 620 7 VAL B 247 O 79.4 125.1 77.1 85.0 150.2 104.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 173 OD2 REMARK 620 2 ASP B 183 OD2 81.3 REMARK 620 3 ASP B 188 OD1 107.7 118.6 REMARK 620 4 ASP B 188 OD2 82.3 71.1 51.6 REMARK 620 5 ASN B 190 O 90.1 164.9 75.7 120.2 REMARK 620 6 HOH B 653 O 96.8 87.2 146.3 158.2 81.5 REMARK 620 7 HOH B 962 O 166.3 85.0 79.3 93.6 103.2 82.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 183 OD1 REMARK 620 2 ASP B 183 OD2 52.5 REMARK 620 3 ASN B 185 O 72.1 124.3 REMARK 620 4 ASN B 185 OD1 87.8 101.1 79.6 REMARK 620 5 GLY B 186 O 148.0 159.5 76.0 84.2 REMARK 620 6 ASP B 188 OD2 123.4 74.0 158.4 85.8 86.8 REMARK 620 7 HOH B 796 O 108.7 94.2 99.1 162.3 78.4 90.0 REMARK 620 N 1 2 3 4 5 6 DBREF1 7W2A A 114 464 UNP A0A808VY57_BURGA DBREF2 7W2A A A0A808VY57 162 512 DBREF1 7W2A B 114 464 UNP A0A808VY57_BURGA DBREF2 7W2A B A0A808VY57 162 512 SEQADV 7W2A ALA A 162 UNP A0A808VY5 VAL 210 CONFLICT SEQADV 7W2A HIS A 465 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS A 466 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS A 467 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS A 468 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS A 469 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS A 470 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A ALA B 162 UNP A0A808VY5 VAL 210 CONFLICT SEQADV 7W2A HIS B 465 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS B 466 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS B 467 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS B 468 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS B 469 UNP A0A808VY5 EXPRESSION TAG SEQADV 7W2A HIS B 470 UNP A0A808VY5 EXPRESSION TAG SEQRES 1 A 357 LEU VAL PRO ASN ASP THR ARG TYR SER GLU GLN TRP GLY SEQRES 2 A 357 TYR ALA SER GLY VAL GLY GLY ALA ASN LEU PRO LYS ALA SEQRES 3 A 357 TRP ASP ILE THR THR GLY SER ASP LYS VAL VAL VAL ALA SEQRES 4 A 357 VAL VAL ASP THR GLY TYR ARG PRO HIS ALA ASP LEU ALA SEQRES 5 A 357 ALA ASN ILE LEU PRO GLY TYR ASP PHE ILE SER ASP PRO SEQRES 6 A 357 ASP SER ALA ASN ASP GLY ASN GLY ARG ASP ASN ASN ALA SEQRES 7 A 357 ALA ASP PRO GLY ASP TRP VAL THR GLN GLN GLU VAL ASP SEQRES 8 A 357 ASP PRO ASN GLY PRO PHE TYR ARG CYS GLN LEU ASP GLN SEQRES 9 A 357 PHE GLY ASN THR PHE ALA SER ASN SER SER TRP HIS GLY SEQRES 10 A 357 THR HIS VAL ALA GLY THR ILE GLY ALA VAL SER ASN ASN SEQRES 11 A 357 GLY THR GLY VAL ALA GLY ILE SER TRP LYS GLY LYS ILE SEQRES 12 A 357 LEU PRO VAL ARG VAL LEU GLY LYS CYS GLY GLY THR LEU SEQRES 13 A 357 SER ASP ILE ALA ASP GLY MET ARG TRP ALA ALA GLY LEU SEQRES 14 A 357 SER VAL PRO GLY ALA PRO ALA ASN PRO ASN PRO ALA SER SEQRES 15 A 357 VAL LEU ASN PHE SER LEU GLY GLY GLY GLY SER CYS SER SEQRES 16 A 357 ARG THR TYR GLN ASN ALA ILE ASN ALA VAL VAL ALA LYS SEQRES 17 A 357 GLY ALA THR VAL VAL VAL ALA ALA GLY ASN GLU ALA SER SEQRES 18 A 357 PRO VAL SER SER SER GLN PRO ALA ASN CYS GLN ASN VAL SEQRES 19 A 357 ILE ALA VAL ALA ALA THR ASP ILE ASN GLY ARG ARG ALA SEQRES 20 A 357 SER PHE THR ASN THR GLY SER LEU VAL LYS ILE ALA ALA SEQRES 21 A 357 PRO GLY VAL ASN ILE LEU SER THR LEU ASN SER GLY THR SEQRES 22 A 357 LYS SER PRO ALA ALA ASP SER TYR ALA SER TYR ASN GLY SEQRES 23 A 357 THR SER MET ALA THR PRO HIS VAL ALA GLY THR VAL ALA SEQRES 24 A 357 LEU MET LEU ALA ALA ASN GLY SER LEU THR PRO SER GLN SEQRES 25 A 357 ILE LEU GLN LYS LEU GLN ALA SER ALA ARG PRO PHE PRO SEQRES 26 A 357 SER GLY SER GLY CYS SER THR SER THR CYS GLY ALA GLY SEQRES 27 A 357 LEU LEU ASP ALA GLY ALA ALA VAL ASN ALA ALA ARG GLN SEQRES 28 A 357 HIS HIS HIS HIS HIS HIS SEQRES 1 B 357 LEU VAL PRO ASN ASP THR ARG TYR SER GLU GLN TRP GLY SEQRES 2 B 357 TYR ALA SER GLY VAL GLY GLY ALA ASN LEU PRO LYS ALA SEQRES 3 B 357 TRP ASP ILE THR THR GLY SER ASP LYS VAL VAL VAL ALA SEQRES 4 B 357 VAL VAL ASP THR GLY TYR ARG PRO HIS ALA ASP LEU ALA SEQRES 5 B 357 ALA ASN ILE LEU PRO GLY TYR ASP PHE ILE SER ASP PRO SEQRES 6 B 357 ASP SER ALA ASN ASP GLY ASN GLY ARG ASP ASN ASN ALA SEQRES 7 B 357 ALA ASP PRO GLY ASP TRP VAL THR GLN GLN GLU VAL ASP SEQRES 8 B 357 ASP PRO ASN GLY PRO PHE TYR ARG CYS GLN LEU ASP GLN SEQRES 9 B 357 PHE GLY ASN THR PHE ALA SER ASN SER SER TRP HIS GLY SEQRES 10 B 357 THR HIS VAL ALA GLY THR ILE GLY ALA VAL SER ASN ASN SEQRES 11 B 357 GLY THR GLY VAL ALA GLY ILE SER TRP LYS GLY LYS ILE SEQRES 12 B 357 LEU PRO VAL ARG VAL LEU GLY LYS CYS GLY GLY THR LEU SEQRES 13 B 357 SER ASP ILE ALA ASP GLY MET ARG TRP ALA ALA GLY LEU SEQRES 14 B 357 SER VAL PRO GLY ALA PRO ALA ASN PRO ASN PRO ALA SER SEQRES 15 B 357 VAL LEU ASN PHE SER LEU GLY GLY GLY GLY SER CYS SER SEQRES 16 B 357 ARG THR TYR GLN ASN ALA ILE ASN ALA VAL VAL ALA LYS SEQRES 17 B 357 GLY ALA THR VAL VAL VAL ALA ALA GLY ASN GLU ALA SER SEQRES 18 B 357 PRO VAL SER SER SER GLN PRO ALA ASN CYS GLN ASN VAL SEQRES 19 B 357 ILE ALA VAL ALA ALA THR ASP ILE ASN GLY ARG ARG ALA SEQRES 20 B 357 SER PHE THR ASN THR GLY SER LEU VAL LYS ILE ALA ALA SEQRES 21 B 357 PRO GLY VAL ASN ILE LEU SER THR LEU ASN SER GLY THR SEQRES 22 B 357 LYS SER PRO ALA ALA ASP SER TYR ALA SER TYR ASN GLY SEQRES 23 B 357 THR SER MET ALA THR PRO HIS VAL ALA GLY THR VAL ALA SEQRES 24 B 357 LEU MET LEU ALA ALA ASN GLY SER LEU THR PRO SER GLN SEQRES 25 B 357 ILE LEU GLN LYS LEU GLN ALA SER ALA ARG PRO PHE PRO SEQRES 26 B 357 SER GLY SER GLY CYS SER THR SER THR CYS GLY ALA GLY SEQRES 27 B 357 LEU LEU ASP ALA GLY ALA ALA VAL ASN ALA ALA ARG GLN SEQRES 28 B 357 HIS HIS HIS HIS HIS HIS HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA B 501 1 HET CA B 502 1 HET CA B 503 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *1132(H2 O) HELIX 1 AA1 ARG A 120 ALA A 128 5 9 HELIX 2 AA2 ASN A 135 ASP A 141 1 7 HELIX 3 AA3 LEU A 164 ILE A 168 5 5 HELIX 4 AA4 ASP A 177 ASN A 182 1 6 HELIX 5 AA5 THR A 199 ASP A 205 1 7 HELIX 6 AA6 TRP A 228 ALA A 239 1 12 HELIX 7 AA7 THR A 268 ALA A 280 1 13 HELIX 8 AA8 SER A 308 LYS A 321 1 14 HELIX 9 AA9 PRO A 335 SER A 337 5 3 HELIX 10 AB1 GLY A 399 ASN A 418 1 20 HELIX 11 AB2 THR A 422 ALA A 434 1 13 HELIX 12 AB3 ASP A 454 VAL A 459 1 6 HELIX 13 AB4 ARG B 120 ALA B 128 5 9 HELIX 14 AB5 ASN B 135 ASP B 141 1 7 HELIX 15 AB6 LEU B 164 ILE B 168 5 5 HELIX 16 AB7 ASP B 177 ASN B 182 1 6 HELIX 17 AB8 THR B 199 ASP B 205 1 7 HELIX 18 AB9 TRP B 228 ALA B 239 1 12 HELIX 19 AC1 THR B 268 ALA B 280 1 13 HELIX 20 AC2 SER B 308 LYS B 321 1 14 HELIX 21 AC3 PRO B 335 SER B 337 5 3 HELIX 22 AC4 GLY B 399 ASN B 418 1 20 HELIX 23 AC5 THR B 422 ALA B 434 1 13 HELIX 24 AC6 ASP B 454 VAL B 459 1 6 SHEET 1 AA1 7 TYR A 172 ASP A 173 0 SHEET 2 AA1 7 LYS A 255 ARG A 260 1 O ARG A 260 N TYR A 172 SHEET 3 AA1 7 VAL A 150 ASP A 155 1 N VAL A 151 O LEU A 257 SHEET 4 AA1 7 VAL A 296 PHE A 299 1 O ASN A 298 N ALA A 152 SHEET 5 AA1 7 THR A 324 ALA A 328 1 O THR A 324 N LEU A 297 SHEET 6 AA1 7 ILE A 348 THR A 353 1 O ILE A 348 N VAL A 325 SHEET 7 AA1 7 VAL A 369 PRO A 374 1 O LYS A 370 N ALA A 349 SHEET 1 AA2 3 SER A 339 GLN A 340 0 SHEET 2 AA2 3 LEU A 301 GLY A 304 -1 N GLY A 303 O GLN A 340 SHEET 3 AA2 3 HIS B 465 HIS B 466 -1 O HIS B 465 N GLY A 302 SHEET 1 AA3 2 ILE A 378 ASN A 383 0 SHEET 2 AA3 2 ASP A 392 TYR A 397 -1 O SER A 393 N LEU A 382 SHEET 1 AA4 7 TYR B 172 ASP B 173 0 SHEET 2 AA4 7 LYS B 255 ARG B 260 1 O ARG B 260 N TYR B 172 SHEET 3 AA4 7 VAL B 150 ASP B 155 1 N VAL B 151 O LEU B 257 SHEET 4 AA4 7 VAL B 296 PHE B 299 1 O ASN B 298 N ALA B 152 SHEET 5 AA4 7 THR B 324 ALA B 328 1 O THR B 324 N LEU B 297 SHEET 6 AA4 7 ILE B 348 THR B 353 1 O ILE B 348 N VAL B 325 SHEET 7 AA4 7 VAL B 369 PRO B 374 1 O LYS B 370 N ALA B 349 SHEET 1 AA5 2 GLY B 303 GLY B 304 0 SHEET 2 AA5 2 SER B 339 GLN B 340 -1 O GLN B 340 N GLY B 303 SHEET 1 AA6 2 ILE B 378 ASN B 383 0 SHEET 2 AA6 2 ASP B 392 TYR B 397 -1 O SER B 393 N LEU B 382 SSBOND 1 CYS A 213 CYS A 265 1555 1555 1.95 SSBOND 2 CYS A 307 CYS A 344 1555 1555 2.04 SSBOND 3 CYS B 213 CYS B 265 1555 1555 2.23 SSBOND 4 CYS B 307 CYS B 344 1555 1555 2.04 LINK OD2 ASP A 118 CA CA A 501 1555 1555 2.34 LINK OD1 ASP A 163 CA CA A 501 1555 1555 2.49 LINK OD2 ASP A 163 CA CA A 501 1555 1555 2.51 LINK OD2 ASP A 173 CA CA A 503 1555 1555 2.38 LINK OD1 ASP A 183 CA CA A 502 1555 1555 2.48 LINK OD2 ASP A 183 CA CA A 502 1555 1555 2.48 LINK OD2 ASP A 183 CA CA A 503 1555 1555 2.36 LINK O ASN A 185 CA CA A 502 1555 1555 2.45 LINK OD1 ASN A 185 CA CA A 502 1555 1555 2.29 LINK O GLY A 186 CA CA A 502 1555 1555 2.33 LINK OD2 ASP A 188 CA CA A 502 1555 1555 2.27 LINK OD1 ASP A 188 CA CA A 503 1555 1555 2.47 LINK OD2 ASP A 188 CA CA A 503 1555 1555 2.54 LINK O ASN A 190 CA CA A 503 1555 1555 2.41 LINK O VAL A 240 CA CA A 501 1555 1555 2.36 LINK OD1 ASN A 243 CA CA A 501 1555 1555 2.43 LINK O THR A 245 CA CA A 501 1555 1555 2.40 LINK O VAL A 247 CA CA A 501 1555 1555 2.44 LINK CA CA A 502 O HOH A 761 1555 1555 2.40 LINK CA CA A 503 O HOH A 660 1555 1555 2.36 LINK CA CA A 503 O HOH A 936 1555 1555 2.40 LINK OD2 ASP B 118 CA CA B 501 1555 1555 2.34 LINK OD1 ASP B 163 CA CA B 501 1555 1555 2.48 LINK OD2 ASP B 163 CA CA B 501 1555 1555 2.51 LINK OD2 ASP B 173 CA CA B 503 1555 1555 2.37 LINK OD1 ASP B 183 CA CA B 502 1555 1555 2.47 LINK OD2 ASP B 183 CA CA B 502 1555 1555 2.48 LINK OD2 ASP B 183 CA CA B 503 1555 1555 2.37 LINK O ASN B 185 CA CA B 502 1555 1555 2.46 LINK OD1 ASN B 185 CA CA B 502 1555 1555 2.31 LINK O GLY B 186 CA CA B 502 1555 1555 2.33 LINK OD2 ASP B 188 CA CA B 502 1555 1555 2.28 LINK OD1 ASP B 188 CA CA B 503 1555 1555 2.48 LINK OD2 ASP B 188 CA CA B 503 1555 1555 2.56 LINK O ASN B 190 CA CA B 503 1555 1555 2.40 LINK O VAL B 240 CA CA B 501 1555 1555 2.37 LINK OD1 ASN B 243 CA CA B 501 1555 1555 2.43 LINK O THR B 245 CA CA B 501 1555 1555 2.39 LINK O VAL B 247 CA CA B 501 1555 1555 2.43 LINK CA CA B 502 O HOH B 796 1555 1555 2.38 LINK CA CA B 503 O HOH B 653 1555 1555 2.34 LINK CA CA B 503 O HOH B 962 1555 1555 2.39 CISPEP 1 GLN A 340 PRO A 341 0 6.95 CISPEP 2 GLN B 340 PRO B 341 0 6.45 CRYST1 83.885 83.885 107.079 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011921 0.006883 0.000000 0.00000 SCALE2 0.000000 0.013765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009339 0.00000