HEADER HYDROLASE 26-NOV-21 7W49 TITLE CRYSTAL STRUCTURE OF THE GASTRIC PROTON PUMP COMPLEXED WITH SORAPRAZAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GASTRIC H(+)/K(+) ATPASE SUBUNIT ALPHA,PROTON PUMP; COMPND 5 EC: 3.6.3.10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: GASTRIC H(+)/K(+) ATPASE SUBUNIT BETA,PROTON PUMP BETA COMPND 12 CHAIN,GP60-90; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: ATP4A; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 10 ORGANISM_COMMON: PIG; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 GENE: ATP4B; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CATION PUMP, P-TYPE ATPASE, GASTRIC, PROTON PUMP, MEMBRANE PROTEIN, KEYWDS 2 P-CAB, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ABE,S.TANAKA REVDAT 4 13-NOV-24 7W49 1 REMARK REVDAT 3 29-NOV-23 7W49 1 REMARK REVDAT 2 20-JUL-22 7W49 1 JRNL REVDAT 1 05-JAN-22 7W49 0 JRNL AUTH S.TANAKA,M.MORITA,T.YAMAGISHI,H.V.MADAPALLY,K.HAYASHIDA, JRNL AUTH 2 H.KHANDELIA,C.GERLE,H.SHIGEMATSU,A.OSHIMA,K.ABE JRNL TITL STRUCTURAL BASIS FOR BINDING OF POTASSIUM-COMPETITIVE ACID JRNL TITL 2 BLOCKERS TO THE GASTRIC PROTON PUMP. JRNL REF J.MED.CHEM. V. 65 7843 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35604136 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00338 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 70.9 REMARK 3 NUMBER OF REFLECTIONS : 31706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5300 - 7.0900 1.00 3792 198 0.2195 0.2931 REMARK 3 2 7.0800 - 5.6300 1.00 3648 174 0.2677 0.2858 REMARK 3 3 5.6300 - 4.9200 1.00 3557 209 0.2446 0.2731 REMARK 3 4 4.9200 - 4.4700 1.00 3527 187 0.2345 0.3042 REMARK 3 5 4.4700 - 4.1500 1.00 3504 200 0.2367 0.2974 REMARK 3 6 4.1500 - 3.9000 1.00 3482 175 0.2637 0.3224 REMARK 3 7 3.9000 - 3.7100 0.82 2883 168 0.2841 0.3463 REMARK 3 8 3.7100 - 3.5500 0.50 1747 87 0.3292 0.4244 REMARK 3 9 3.5500 - 3.4100 0.37 1270 85 0.3076 0.3759 REMARK 3 10 3.4100 - 3.2900 0.30 1028 63 0.3199 0.3775 REMARK 3 11 3.2900 - 3.1900 0.25 864 46 0.3334 0.4134 REMARK 3 12 3.1900 - 3.1000 0.22 760 52 0.3637 0.5049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.439 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.871 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 10044 REMARK 3 ANGLE : 0.620 13655 REMARK 3 CHIRALITY : 0.054 1552 REMARK 3 PLANARITY : 0.005 1755 REMARK 3 DIHEDRAL : 6.219 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 37.5620 -32.1112 -42.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.4612 REMARK 3 T33: 0.3336 T12: -0.0953 REMARK 3 T13: 0.1022 T23: -0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.1354 L22: 0.2311 REMARK 3 L33: 0.1692 L12: -0.0079 REMARK 3 L13: -0.1985 L23: -0.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.1033 S13: 0.0279 REMARK 3 S21: 0.0965 S22: -0.0405 S23: 0.1141 REMARK 3 S31: -0.0443 S32: -0.2791 S33: 0.0145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300025949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44513 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YLV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% GLYCEROL, 0.2 M RBCL, 20% PEG REMARK 280 2000MME, 3% TERT-BUOH, 5 MM BETA-MESH, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.62967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 247.25933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 247.25933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.62967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 TYR A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 GLN A 10 REMARK 465 VAL A 11 REMARK 465 GLU A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 ASP A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 LYS A 24 REMARK 465 MET A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 LYS A 36 REMARK 465 ARG A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 LYS A 40 REMARK 465 LEU A 41 REMARK 465 GLU A 42 REMARK 465 ASN A 43 REMARK 465 MET A 44 REMARK 465 LYS A 45 REMARK 465 LYS A 46 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 CYS B 10 REMARK 465 SER B 11 REMARK 465 GLN B 12 REMARK 465 ARG B 13 REMARK 465 MET B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 PHE B 17 REMARK 465 GLN B 18 REMARK 465 ARG B 19 REMARK 465 TYR B 20 REMARK 465 CYS B 21 REMARK 465 TRP B 22 REMARK 465 ASN B 23 REMARK 465 PRO B 24 REMARK 465 ASP B 25 REMARK 465 THR B 26 REMARK 465 GLY B 27 REMARK 465 GLN B 28 REMARK 465 MET B 29 REMARK 465 LEU B 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 886 OG SER A 910 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 95 69.13 -117.03 REMARK 500 LYS A 386 -65.33 -92.53 REMARK 500 GLU A1030 -64.27 -95.72 REMARK 500 LEU B 77 52.47 -93.29 REMARK 500 GLN B 160 -17.89 71.07 REMARK 500 ASN B 161 -15.04 -143.00 REMARK 500 ASP B 205 120.98 -39.72 REMARK 500 GLN B 206 70.49 -114.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1015 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A1102 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 339 O REMARK 620 2 GLU A 343 OE2 113.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BFD A 385 OD1 REMARK 620 2 ASP A 726 OD1 84.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A1103 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 735 O REMARK 620 2 ALA A 737 O 73.9 REMARK 620 3 ASP A 756 OD2 162.1 98.2 REMARK 620 N 1 2 DBREF 7W49 A 0 1033 UNP P19156 ATP4A_PIG 1 1034 DBREF 7W49 B 1 290 UNP P18434 ATP4B_PIG 1 290 SEQADV 7W49 CYS A 220 UNP P19156 ARG 221 ENGINEERED MUTATION SEQADV 7W49 CYS A 593 UNP P19156 SER 594 ENGINEERED MUTATION SEQADV 7W49 SER A 1005 UNP P19156 GLY 1006 ENGINEERED MUTATION SEQRES 1 A 1034 MET GLY LYS ALA GLU ASN TYR GLU LEU TYR GLN VAL GLU SEQRES 2 A 1034 LEU GLY PRO GLY PRO SER GLY ASP MET ALA ALA LYS MET SEQRES 3 A 1034 SER LYS LYS LYS ALA GLY ARG GLY GLY GLY LYS ARG LYS SEQRES 4 A 1034 GLU LYS LEU GLU ASN MET LYS LYS GLU MET GLU ILE ASN SEQRES 5 A 1034 ASP HIS GLN LEU SER VAL ALA GLU LEU GLU GLN LYS TYR SEQRES 6 A 1034 GLN THR SER ALA THR LYS GLY LEU SER ALA SER LEU ALA SEQRES 7 A 1034 ALA GLU LEU LEU LEU ARG ASP GLY PRO ASN ALA LEU ARG SEQRES 8 A 1034 PRO PRO ARG GLY THR PRO GLU TYR VAL LYS PHE ALA ARG SEQRES 9 A 1034 GLN LEU ALA GLY GLY LEU GLN CYS LEU MET TRP VAL ALA SEQRES 10 A 1034 ALA ALA ILE CYS LEU ILE ALA PHE ALA ILE GLN ALA SER SEQRES 11 A 1034 GLU GLY ASP LEU THR THR ASP ASP ASN LEU TYR LEU ALA SEQRES 12 A 1034 LEU ALA LEU ILE ALA VAL VAL VAL VAL THR GLY CYS PHE SEQRES 13 A 1034 GLY TYR TYR GLN GLU PHE LYS SER THR ASN ILE ILE ALA SEQRES 14 A 1034 SER PHE LYS ASN LEU VAL PRO GLN GLN ALA THR VAL ILE SEQRES 15 A 1034 ARG ASP GLY ASP LYS PHE GLN ILE ASN ALA ASP GLN LEU SEQRES 16 A 1034 VAL VAL GLY ASP LEU VAL GLU MET LYS GLY GLY ASP ARG SEQRES 17 A 1034 VAL PRO ALA ASP ILE ARG ILE LEU GLN ALA GLN GLY CYS SEQRES 18 A 1034 LYS VAL ASP ASN SER SER LEU THR GLY GLU SER GLU PRO SEQRES 19 A 1034 GLN THR ARG SER PRO GLU CYS THR HIS GLU SER PRO LEU SEQRES 20 A 1034 GLU THR ARG ASN ILE ALA PHE PHE SER THR MET CYS LEU SEQRES 21 A 1034 GLU GLY THR ALA GLN GLY LEU VAL VAL ASN THR GLY ASP SEQRES 22 A 1034 ARG THR ILE ILE GLY ARG ILE ALA SER LEU ALA SER GLY SEQRES 23 A 1034 VAL GLU ASN GLU LYS THR PRO ILE ALA ILE GLU ILE GLU SEQRES 24 A 1034 HIS PHE VAL ASP ILE ILE ALA GLY LEU ALA ILE LEU PHE SEQRES 25 A 1034 GLY ALA THR PHE PHE ILE VAL ALA MET CYS ILE GLY TYR SEQRES 26 A 1034 THR PHE LEU ARG ALA MET VAL PHE PHE MET ALA ILE VAL SEQRES 27 A 1034 VAL ALA TYR VAL PRO GLU GLY LEU LEU ALA THR VAL THR SEQRES 28 A 1034 VAL CYS LEU SER LEU THR ALA LYS ARG LEU ALA SER LYS SEQRES 29 A 1034 ASN CYS VAL VAL LYS ASN LEU GLU ALA VAL GLU THR LEU SEQRES 30 A 1034 GLY SER THR SER VAL ILE CYS SER BFD LYS THR GLY THR SEQRES 31 A 1034 LEU THR GLN ASN ARG MET THR VAL SER HIS LEU TRP PHE SEQRES 32 A 1034 ASP ASN HIS ILE HIS SER ALA ASP THR THR GLU ASP GLN SEQRES 33 A 1034 SER GLY GLN THR PHE ASP GLN SER SER GLU THR TRP ARG SEQRES 34 A 1034 ALA LEU CYS ARG VAL LEU THR LEU CYS ASN ARG ALA ALA SEQRES 35 A 1034 PHE LYS SER GLY GLN ASP ALA VAL PRO VAL PRO LYS ARG SEQRES 36 A 1034 ILE VAL ILE GLY ASP ALA SER GLU THR ALA LEU LEU LYS SEQRES 37 A 1034 PHE SER GLU LEU THR LEU GLY ASN ALA MET GLY TYR ARG SEQRES 38 A 1034 GLU ARG PHE PRO LYS VAL CYS GLU ILE PRO PHE ASN SER SEQRES 39 A 1034 THR ASN LYS PHE GLN LEU SER ILE HIS THR LEU GLU ASP SEQRES 40 A 1034 PRO ARG ASP PRO ARG HIS VAL LEU VAL MET LYS GLY ALA SEQRES 41 A 1034 PRO GLU ARG VAL LEU GLU ARG CYS SER SER ILE LEU ILE SEQRES 42 A 1034 LYS GLY GLN GLU LEU PRO LEU ASP GLU GLN TRP ARG GLU SEQRES 43 A 1034 ALA PHE GLN THR ALA TYR LEU SER LEU GLY GLY LEU GLY SEQRES 44 A 1034 GLU ARG VAL LEU GLY PHE CYS GLN LEU TYR LEU SER GLU SEQRES 45 A 1034 LYS ASP TYR PRO PRO GLY TYR ALA PHE ASP VAL GLU ALA SEQRES 46 A 1034 MET ASN PHE PRO THR SER GLY LEU CYS PHE ALA GLY LEU SEQRES 47 A 1034 VAL SER MET ILE ASP PRO PRO ARG ALA THR VAL PRO ASP SEQRES 48 A 1034 ALA VAL LEU LYS CYS ARG THR ALA GLY ILE ARG VAL ILE SEQRES 49 A 1034 MET VAL THR GLY ASP HIS PRO ILE THR ALA LYS ALA ILE SEQRES 50 A 1034 ALA ALA SER VAL GLY ILE ILE SER GLU GLY SER GLU THR SEQRES 51 A 1034 VAL GLU ASP ILE ALA ALA ARG LEU ARG VAL PRO VAL ASP SEQRES 52 A 1034 GLN VAL ASN ARG LYS ASP ALA ARG ALA CYS VAL ILE ASN SEQRES 53 A 1034 GLY MET GLN LEU LYS ASP MET ASP PRO SER GLU LEU VAL SEQRES 54 A 1034 GLU ALA LEU ARG THR HIS PRO GLU MET VAL PHE ALA ARG SEQRES 55 A 1034 THR SER PRO GLN GLN LYS LEU VAL ILE VAL GLU SER CYS SEQRES 56 A 1034 GLN ARG LEU GLY ALA ILE VAL ALA VAL THR GLY ASP GLY SEQRES 57 A 1034 VAL ASN ASP SER PRO ALA LEU LYS LYS ALA ASP ILE GLY SEQRES 58 A 1034 VAL ALA MET GLY ILE ALA GLY SER ASP ALA ALA LYS ASN SEQRES 59 A 1034 ALA ALA ASP MET ILE LEU LEU ASP ASP ASN PHE ALA SER SEQRES 60 A 1034 ILE VAL THR GLY VAL GLU GLN GLY ARG LEU ILE PHE ASP SEQRES 61 A 1034 ASN LEU LYS LYS SER ILE ALA TYR THR LEU THR LYS ASN SEQRES 62 A 1034 ILE PRO GLU LEU THR PRO TYR LEU ILE TYR ILE THR VAL SEQRES 63 A 1034 SER VAL PRO LEU PRO LEU GLY CYS ILE THR ILE LEU PHE SEQRES 64 A 1034 ILE GLU LEU CYS THR ASP ILE PHE PRO SER VAL SER LEU SEQRES 65 A 1034 ALA TYR GLU LYS ALA GLU SER ASP ILE MET HIS LEU ARG SEQRES 66 A 1034 PRO ARG ASN PRO LYS ARG ASP ARG LEU VAL ASN GLU PRO SEQRES 67 A 1034 LEU ALA ALA TYR SER TYR PHE GLN ILE GLY ALA ILE GLN SEQRES 68 A 1034 SER PHE ALA GLY PHE THR ASP TYR PHE THR ALA MET ALA SEQRES 69 A 1034 GLN GLU GLY TRP PHE PRO LEU LEU CYS VAL GLY LEU ARG SEQRES 70 A 1034 PRO GLN TRP GLU ASN HIS HIS LEU GLN ASP LEU GLN ASP SEQRES 71 A 1034 SER TYR GLY GLN GLU TRP THR PHE GLY GLN ARG LEU TYR SEQRES 72 A 1034 GLN GLN TYR THR CYS TYR THR VAL PHE PHE ILE SER ILE SEQRES 73 A 1034 GLU MET CYS GLN ILE ALA ASP VAL LEU ILE ARG LYS THR SEQRES 74 A 1034 ARG ARG LEU SER ALA PHE GLN GLN GLY PHE PHE ARG ASN SEQRES 75 A 1034 ARG ILE LEU VAL ILE ALA ILE VAL PHE GLN VAL CYS ILE SEQRES 76 A 1034 GLY CYS PHE LEU CYS TYR CYS PRO GLY MET PRO ASN ILE SEQRES 77 A 1034 PHE ASN PHE MET PRO ILE ARG PHE GLN TRP TRP LEU VAL SEQRES 78 A 1034 PRO MET PRO PHE SER LEU LEU ILE PHE VAL TYR ASP GLU SEQRES 79 A 1034 ILE ARG LYS LEU GLY VAL ARG CYS CYS PRO GLY SER TRP SEQRES 80 A 1034 TRP ASP GLN GLU LEU TYR TYR SEQRES 1 B 290 MET ALA ALA LEU GLN GLU LYS LYS SER CYS SER GLN ARG SEQRES 2 B 290 MET GLU GLU PHE GLN ARG TYR CYS TRP ASN PRO ASP THR SEQRES 3 B 290 GLY GLN MET LEU GLY ARG THR LEU SER ARG TRP VAL TRP SEQRES 4 B 290 ILE SER LEU TYR TYR VAL ALA PHE TYR VAL VAL MET SER SEQRES 5 B 290 GLY ILE PHE ALA LEU CYS ILE TYR VAL LEU MET ARG THR SEQRES 6 B 290 ILE ASP PRO TYR THR PRO ASP TYR GLN ASP GLN LEU LYS SEQRES 7 B 290 SER PRO GLY VAL THR LEU ARG PRO ASP VAL TYR GLY GLU SEQRES 8 B 290 LYS GLY LEU ASP ILE SER TYR ASN VAL SER ASP SER THR SEQRES 9 B 290 THR TRP ALA GLY LEU ALA HIS THR LEU HIS ARG PHE LEU SEQRES 10 B 290 ALA GLY TYR SER PRO ALA ALA GLN GLU GLY SER ILE ASN SEQRES 11 B 290 CYS THR SER GLU LYS TYR PHE PHE GLN GLU SER PHE LEU SEQRES 12 B 290 ALA PRO ASN HIS THR LYS PHE SER CYS LYS PHE THR ALA SEQRES 13 B 290 ASP MET LEU GLN ASN CYS SER GLY ARG PRO ASP PRO THR SEQRES 14 B 290 PHE GLY PHE ALA GLU GLY LYS PRO CYS PHE ILE ILE LYS SEQRES 15 B 290 MET ASN ARG ILE VAL LYS PHE LEU PRO GLY ASN SER THR SEQRES 16 B 290 ALA PRO ARG VAL ASP CYS ALA PHE LEU ASP GLN PRO ARG SEQRES 17 B 290 ASP GLY PRO PRO LEU GLN VAL GLU TYR PHE PRO ALA ASN SEQRES 18 B 290 GLY THR TYR SER LEU HIS TYR PHE PRO TYR TYR GLY LYS SEQRES 19 B 290 LYS ALA GLN PRO HIS TYR SER ASN PRO LEU VAL ALA ALA SEQRES 20 B 290 LYS LEU LEU ASN VAL PRO ARG ASN ARG ASP VAL VAL ILE SEQRES 21 B 290 VAL CYS LYS ILE LEU ALA GLU HIS VAL SER PHE ASP ASN SEQRES 22 B 290 PRO HIS ASP PRO TYR GLU GLY LYS VAL GLU PHE LYS LEU SEQRES 23 B 290 LYS ILE GLN LYS MODRES 7W49 BFD A 385 ASP MODIFIED RESIDUE HET BFD A 385 12 HET MG A1101 1 HET RB A1102 1 HET RB A1103 1 HET 8CE A1104 52 HET NAG B 301 14 HET NAG B 302 14 HET NAG B 303 14 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM MG MAGNESIUM ION HETNAM RB RUBIDIUM ION HETNAM 8CE SORAPRAZAN HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 BFD C4 H6 BE F3 N O4 2- FORMUL 3 MG MG 2+ FORMUL 4 RB 2(RB 1+) FORMUL 6 8CE C21 H25 N3 O3 FORMUL 7 NAG 3(C8 H15 N O6) HELIX 1 AA1 SER A 56 TYR A 64 1 9 HELIX 2 AA2 SER A 73 GLY A 85 1 13 HELIX 3 AA3 TYR A 98 GLN A 104 1 7 HELIX 4 AA4 GLY A 107 GLY A 131 1 25 HELIX 5 AA5 ASP A 136 SER A 169 1 34 HELIX 6 AA6 ASP A 192 LEU A 194 5 3 HELIX 7 AA7 THR A 270 ARG A 273 5 4 HELIX 8 AA8 THR A 274 VAL A 286 1 13 HELIX 9 AA9 THR A 291 MET A 320 1 30 HELIX 10 AB1 CYS A 321 GLY A 323 5 3 HELIX 11 AB2 THR A 325 VAL A 341 1 17 HELIX 12 AB3 GLY A 344 LYS A 363 1 20 HELIX 13 AB4 ASN A 369 VAL A 373 5 5 HELIX 14 AB5 GLU A 374 THR A 379 1 6 HELIX 15 AB6 SER A 424 CYS A 437 1 14 HELIX 16 AB7 PRO A 450 ARG A 454 5 5 HELIX 17 AB8 ASP A 459 LEU A 473 1 15 HELIX 18 AB9 ASN A 475 GLU A 481 1 7 HELIX 19 AC1 ALA A 519 GLU A 525 1 7 HELIX 20 AC2 ASP A 540 GLY A 556 1 17 HELIX 21 AC3 THR A 607 THR A 617 1 11 HELIX 22 AC4 HIS A 629 VAL A 640 1 12 HELIX 23 AC5 THR A 649 ALA A 655 1 7 HELIX 24 AC6 GLY A 676 ASP A 681 1 6 HELIX 25 AC7 ASP A 683 ARG A 692 1 10 HELIX 26 AC8 SER A 703 ARG A 716 1 14 HELIX 27 AC9 ASP A 730 ALA A 737 1 8 HELIX 28 AD1 SER A 748 ALA A 754 1 7 HELIX 29 AD2 ASN A 763 SER A 766 5 4 HELIX 30 AD3 ILE A 767 LYS A 791 1 25 HELIX 31 AD4 LYS A 791 VAL A 805 1 15 HELIX 32 AD5 GLY A 812 CYS A 822 1 11 HELIX 33 AD6 ASP A 824 LEU A 831 1 8 HELIX 34 AD7 ALA A 832 GLU A 834 5 3 HELIX 35 AD8 ASN A 855 GLN A 884 1 30 HELIX 36 AD9 PHE A 888 VAL A 893 1 6 HELIX 37 AE1 LEU A 895 GLU A 900 1 6 HELIX 38 AE2 THR A 916 ARG A 946 1 31 HELIX 39 AE3 SER A 952 GLY A 957 1 6 HELIX 40 AE4 ASN A 961 CYS A 981 1 21 HELIX 41 AE5 GLY A 983 PHE A 988 1 6 HELIX 42 AE6 ARG A 994 VAL A 1000 1 7 HELIX 43 AE7 PRO A 1001 CYS A 1022 1 22 HELIX 44 AE8 TRP A 1026 LEU A 1031 1 6 HELIX 45 AE9 SER B 35 ILE B 66 1 32 HELIX 46 AF1 ASP B 102 THR B 105 5 4 HELIX 47 AF2 TRP B 106 ALA B 118 1 13 HELIX 48 AF3 ALA B 144 THR B 148 5 5 HELIX 49 AF4 THR B 155 GLN B 160 5 6 HELIX 50 AF5 PRO B 219 THR B 223 5 5 HELIX 51 AF6 SER B 225 PHE B 229 5 5 SHEET 1 AA1 6 ASP A 185 ASN A 190 0 SHEET 2 AA1 6 GLN A 177 ARG A 182 -1 N ALA A 178 O ILE A 189 SHEET 3 AA1 6 LEU A 199 MET A 202 -1 O LEU A 199 N ILE A 181 SHEET 4 AA1 6 MET A 257 ASN A 269 -1 O GLY A 265 N VAL A 200 SHEET 5 AA1 6 ASP A 211 ASP A 223 -1 N ASP A 223 O MET A 257 SHEET 6 AA1 6 GLN A 234 THR A 235 -1 O GLN A 234 N VAL A 222 SHEET 1 AA2 6 ASP A 185 ASN A 190 0 SHEET 2 AA2 6 GLN A 177 ARG A 182 -1 N ALA A 178 O ILE A 189 SHEET 3 AA2 6 LEU A 199 MET A 202 -1 O LEU A 199 N ILE A 181 SHEET 4 AA2 6 MET A 257 ASN A 269 -1 O GLY A 265 N VAL A 200 SHEET 5 AA2 6 ASP A 211 ASP A 223 -1 N ASP A 223 O MET A 257 SHEET 6 AA2 6 ILE A 251 ALA A 252 -1 O ALA A 252 N ILE A 212 SHEET 1 AA3 8 CYS A 365 VAL A 367 0 SHEET 2 AA3 8 MET A 757 LEU A 759 -1 O ILE A 758 N VAL A 366 SHEET 3 AA3 8 ILE A 739 MET A 743 1 N ALA A 742 O LEU A 759 SHEET 4 AA3 8 VAL A 721 GLY A 725 1 N VAL A 723 O VAL A 741 SHEET 5 AA3 8 VAL A 381 SER A 384 1 N CYS A 383 O ALA A 722 SHEET 6 AA3 8 ARG A 621 VAL A 625 1 O ILE A 623 N ILE A 382 SHEET 7 AA3 8 GLU A 696 ALA A 700 1 O PHE A 699 N MET A 624 SHEET 8 AA3 8 ALA A 671 ASN A 675 1 N ILE A 674 O VAL A 698 SHEET 1 AA4 7 ILE A 406 SER A 408 0 SHEET 2 AA4 7 THR A 396 TRP A 401 -1 N LEU A 400 O HIS A 407 SHEET 3 AA4 7 LEU A 592 ILE A 601 -1 O SER A 599 N HIS A 399 SHEET 4 AA4 7 ARG A 560 LEU A 569 -1 N GLN A 566 O CYS A 593 SHEET 5 AA4 7 HIS A 512 GLY A 518 -1 N GLY A 518 O GLY A 563 SHEET 6 AA4 7 PHE A 497 THR A 503 -1 N HIS A 502 O VAL A 513 SHEET 7 AA4 7 LYS A 485 ILE A 489 -1 N ILE A 489 O LEU A 499 SHEET 1 AA5 5 ILE A 406 SER A 408 0 SHEET 2 AA5 5 THR A 396 TRP A 401 -1 N LEU A 400 O HIS A 407 SHEET 3 AA5 5 LEU A 592 ILE A 601 -1 O SER A 599 N HIS A 399 SHEET 4 AA5 5 CYS A 527 ILE A 532 1 N SER A 529 O PHE A 594 SHEET 5 AA5 5 GLN A 535 PRO A 538 -1 O LEU A 537 N ILE A 530 SHEET 1 AA6 2 ALA A 441 PHE A 442 0 SHEET 2 AA6 2 VAL A 456 ILE A 457 -1 O ILE A 457 N ALA A 441 SHEET 1 AA7 2 LEU A 907 GLN A 908 0 SHEET 2 AA7 2 GLU A 914 TRP A 915 -1 O TRP A 915 N LEU A 907 SHEET 1 AA8 4 VAL B 82 ARG B 85 0 SHEET 2 AA8 4 CYS B 178 MET B 183 -1 O LYS B 182 N THR B 83 SHEET 3 AA8 4 VAL B 245 LEU B 249 -1 O VAL B 245 N ILE B 181 SHEET 4 AA8 4 VAL B 215 PHE B 218 -1 N GLU B 216 O LYS B 248 SHEET 1 AA9 4 ASP B 95 ASN B 99 0 SHEET 2 AA9 4 LYS B 281 GLN B 289 1 O LYS B 285 N ILE B 96 SHEET 3 AA9 4 VAL B 258 LEU B 265 -1 N VAL B 258 O LEU B 286 SHEET 4 AA9 4 ARG B 198 PHE B 203 -1 N ALA B 202 O VAL B 261 SSBOND 1 CYS B 131 CYS B 152 1555 1555 2.03 SSBOND 2 CYS B 162 CYS B 178 1555 1555 2.03 SSBOND 3 CYS B 201 CYS B 262 1555 1555 2.03 LINK C SER A 384 N BFD A 385 1555 1555 1.33 LINK C BFD A 385 N LYS A 386 1555 1555 1.33 LINK ND2 ASN B 99 C1 NAG B 301 1555 1555 1.44 LINK ND2 ASN B 130 C1 NAG B 302 1555 1555 1.44 LINK ND2 ASN B 161 C1 NAG B 303 1555 1555 1.45 LINK O ALA A 339 RB RB A1102 1555 1555 2.68 LINK OE2 GLU A 343 RB RB A1102 1555 1555 2.74 LINK OD1 BFD A 385 MG MG A1101 1555 1555 2.82 LINK OD1 ASP A 726 MG MG A1101 1555 1555 2.75 LINK O LYS A 735 RB RB A1103 1555 1555 2.67 LINK O ALA A 737 RB RB A1103 1555 1555 2.89 LINK OD2 ASP A 756 RB RB A1103 1555 1555 2.70 CISPEP 1 ARG B 85 PRO B 86 0 -0.64 CISPEP 2 ARG B 165 PRO B 166 0 5.17 CISPEP 3 PHE B 218 PRO B 219 0 3.12 CISPEP 4 PHE B 229 PRO B 230 0 -4.29 CRYST1 105.533 105.533 370.889 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009476 0.005471 0.000000 0.00000 SCALE2 0.000000 0.010942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002696 0.00000