HEADER LYASE/METAL BINDING PROTEIN 30-NOV-21 7W5I TITLE THE STRUCTURE OF TRICHOBRASILENOL SYNTHASE TATC6 IN COMPLEX WITH FPP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERPENE CYCLASE 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SESQUITERPENE SYNTHASE 6; COMPND 5 EC: 4.2.3.-,4.2.3.104,4.2.3.137,4.2.3.157,4.2.3.182,4.2.3.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODERMA ATROVIRIDE; SOURCE 3 ORGANISM_TAXID: 63577; SOURCE 4 GENE: TATC6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRICHOBRASILENOL SYNTHASE, TRICHODERMA, SESQUITERPENE CYCLASE, KEYWDS 2 FARNESYL DIPHOSPHATE, METAL BINDING PROTEIN, LYASE-METAL BINDING KEYWDS 3 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,T.WANG,Y.YANG,L.ZHANG,T.KO,J.HUANG,R.GUO REVDAT 2 29-NOV-23 7W5I 1 REMARK REVDAT 1 01-JUN-22 7W5I 0 JRNL AUTH T.WANG,Y.YANG,M.HE,M.LIU,J.W.HUANG,J.MIN,C.C.CHEN,Y.LIU, JRNL AUTH 2 L.ZHANG,R.T.GUO JRNL TITL STRUCTURAL INSIGHTS INTO THE CYCLIZATION OF UNUSUAL JRNL TITL 2 BRASILANE-TYPE SESQUITERPENES. JRNL REF INT.J.BIOL.MACROMOL. V. 209 1784 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 35504416 JRNL DOI 10.1016/J.IJBIOMAC.2022.04.150 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 78685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 3751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3000 - 6.3800 0.98 2900 146 0.2056 0.2174 REMARK 3 2 6.3700 - 5.0700 0.99 2924 146 0.2153 0.2591 REMARK 3 3 5.0700 - 4.4300 0.98 2917 147 0.1843 0.2070 REMARK 3 4 4.4300 - 4.0200 0.97 2861 151 0.1660 0.1838 REMARK 3 5 4.0200 - 3.7400 0.97 2877 148 0.1637 0.1936 REMARK 3 6 3.7400 - 3.5200 0.98 2875 152 0.1735 0.2067 REMARK 3 7 3.5200 - 3.3400 0.98 2912 134 0.1845 0.2375 REMARK 3 8 3.3400 - 3.1900 0.98 2893 150 0.1874 0.1896 REMARK 3 9 3.1900 - 3.0700 0.98 2891 140 0.2033 0.2234 REMARK 3 10 3.0700 - 2.9700 0.98 2933 145 0.2035 0.2202 REMARK 3 11 2.9700 - 2.8700 0.98 2884 135 0.2062 0.2059 REMARK 3 12 2.8700 - 2.7900 0.98 2877 172 0.2011 0.2902 REMARK 3 13 2.7900 - 2.7200 0.98 2866 134 0.2080 0.2400 REMARK 3 14 2.7200 - 2.6500 0.97 2911 158 0.2144 0.2613 REMARK 3 15 2.6500 - 2.5900 0.96 2783 134 0.2117 0.2611 REMARK 3 16 2.5900 - 2.5400 0.95 2862 119 0.2180 0.2530 REMARK 3 17 2.5400 - 2.4900 0.93 2710 150 0.2061 0.2245 REMARK 3 18 2.4900 - 2.4400 0.92 2779 131 0.2275 0.2823 REMARK 3 19 2.4400 - 2.3900 0.91 2639 156 0.2256 0.2801 REMARK 3 20 2.3900 - 2.3500 0.90 2701 113 0.2218 0.2553 REMARK 3 21 2.3500 - 2.3200 0.89 2671 139 0.2200 0.2671 REMARK 3 22 2.3200 - 2.2800 0.88 2604 110 0.2242 0.2320 REMARK 3 23 2.2800 - 2.2500 0.87 2562 113 0.2307 0.2648 REMARK 3 24 2.2500 - 2.2200 0.87 2603 160 0.2394 0.2955 REMARK 3 25 2.2200 - 2.1900 0.86 2458 125 0.2304 0.2307 REMARK 3 26 2.1900 - 2.1600 0.84 2608 106 0.2330 0.2357 REMARK 3 27 2.1600 - 2.1300 0.84 2433 137 0.2406 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34138 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91204 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 33.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OKM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM MALONATE, PH 6.0, REMARK 280 EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.16800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 70 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -10 REMARK 465 ALA A -9 REMARK 465 GLY A -8 REMARK 465 ALA A -7 REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 PHE A 10 REMARK 465 MET A 11 REMARK 465 ARG A 12 REMARK 465 ASP A 13 REMARK 465 VAL A 14 REMARK 465 MET A 15 REMARK 465 PHE A 16 REMARK 465 HIS A 17 REMARK 465 ARG A 18 REMARK 465 MET A 19 REMARK 465 THR A 20 REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 26 REMARK 465 ASN A 27 REMARK 465 ASP A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 LEU A 32 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLU A 136 REMARK 465 LEU A 137 REMARK 465 THR A 138 REMARK 465 GLU A 139 REMARK 465 GLN A 212 REMARK 465 LYS A 213 REMARK 465 VAL A 214 REMARK 465 ARG A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 217 REMARK 465 ASP A 218 REMARK 465 THR A 386 REMARK 465 GLY B -10 REMARK 465 ALA B -9 REMARK 465 GLY B -8 REMARK 465 ALA B -7 REMARK 465 GLY B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 PHE B 10 REMARK 465 MET B 11 REMARK 465 ARG B 12 REMARK 465 ASP B 13 REMARK 465 VAL B 14 REMARK 465 MET B 15 REMARK 465 PHE B 16 REMARK 465 HIS B 17 REMARK 465 ARG B 18 REMARK 465 MET B 19 REMARK 465 THR B 20 REMARK 465 GLY B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 GLN B 24 REMARK 465 ALA B 25 REMARK 465 VAL B 26 REMARK 465 ASN B 27 REMARK 465 ASP B 28 REMARK 465 VAL B 29 REMARK 465 ALA B 30 REMARK 465 THR B 31 REMARK 465 ASP B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 GLU B 136 REMARK 465 LEU B 137 REMARK 465 THR B 138 REMARK 465 GLU B 139 REMARK 465 GLN B 212 REMARK 465 LYS B 213 REMARK 465 VAL B 214 REMARK 465 ARG B 215 REMARK 465 GLN B 216 REMARK 465 GLU B 217 REMARK 465 ASP B 218 REMARK 465 THR B 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 211 OD2 ASP A 233 1.43 REMARK 500 MG MG B 409 O HOH B 505 1.61 REMARK 500 O2B FPP B 401 MG MG B 409 1.66 REMARK 500 OG1 THR B 194 O HOH B 501 1.75 REMARK 500 O HOH B 533 O HOH B 733 1.77 REMARK 500 OE2 GLU A 35 CB HIS A 219 1.81 REMARK 500 C15 FPP A 401 O HOH A 779 1.82 REMARK 500 OE2 GLU A 77 O HOH A 501 1.84 REMARK 500 O1A FPP B 401 O HOH B 502 1.85 REMARK 500 O ASP B 375 O HOH B 503 1.91 REMARK 500 O HOH B 740 O HOH B 791 1.93 REMARK 500 O GLN B 211 O HOH B 504 1.94 REMARK 500 O2B FPP B 401 O HOH B 505 2.00 REMARK 500 N HIS A 219 O HOH A 502 2.00 REMARK 500 O HOH A 672 O HOH A 697 2.01 REMARK 500 O HOH A 662 O HOH A 681 2.10 REMARK 500 O HOH A 743 O HOH A 818 2.15 REMARK 500 O9 MLI B 403 O HOH B 506 2.15 REMARK 500 O HOH B 795 O HOH B 840 2.15 REMARK 500 O HOH B 776 O HOH B 831 2.16 REMARK 500 O HOH B 518 O HOH B 669 2.18 REMARK 500 O HOH A 646 O HOH A 708 2.18 REMARK 500 O HOH B 700 O HOH B 783 2.18 REMARK 500 O6 MLI A 404 O HOH A 503 2.19 REMARK 500 O HOH A 760 O HOH A 768 2.19 REMARK 500 O HOH A 509 O HOH A 639 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 721 O HOH B 743 1455 2.10 REMARK 500 O HOH A 783 O HOH B 743 1455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 83 CA - C - O ANGL. DEV. = 13.4 DEGREES REMARK 500 ASN B 83 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 ASN B 83 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 377 13.82 85.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 883 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 884 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 885 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 886 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 887 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 888 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 889 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH B 859 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 860 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 861 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 862 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 863 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 864 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 865 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 866 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 867 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH B 868 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH B 869 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH B 870 DISTANCE = 8.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 276 OD1 REMARK 620 2 SER A 280 OG 88.7 REMARK 620 3 GLU A 284 OE2 168.5 80.4 REMARK 620 4 FPP A 401 O2A 92.1 175.7 99.0 REMARK 620 5 FPP A 401 O1B 88.3 90.8 95.8 85.0 REMARK 620 6 HOH A 523 O 95.7 82.3 79.0 101.7 172.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 276 OD1 REMARK 620 2 SER B 280 OG 89.6 REMARK 620 3 GLU B 284 OE2 161.8 82.5 REMARK 620 4 FPP B 401 O2A 98.9 162.2 84.7 REMARK 620 5 FPP B 401 O1B 81.4 90.3 82.2 75.6 REMARK 620 6 HOH B 621 O 104.4 92.0 92.3 100.9 173.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 284 OE2 REMARK 620 2 FPP B 401 O3A 94.4 REMARK 620 3 HOH B 729 O 82.9 109.8 REMARK 620 N 1 2 DBREF1 7W5I A 1 386 UNP TATC6_HYPAT DBREF2 7W5I A A0A5S9I252 1 386 DBREF1 7W5I B 1 386 UNP TATC6_HYPAT DBREF2 7W5I B A0A5S9I252 1 386 SEQADV 7W5I GLY A -10 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA A -9 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY A -8 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA A -7 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY A -6 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA A -5 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY A -4 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA A -3 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY A -2 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA A -1 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY A 0 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY B -10 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA B -9 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY B -8 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA B -7 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY B -6 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA B -5 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY B -4 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA B -3 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY B -2 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I ALA B -1 UNP A0A5S9I25 EXPRESSION TAG SEQADV 7W5I GLY B 0 UNP A0A5S9I25 EXPRESSION TAG SEQRES 1 A 397 GLY ALA GLY ALA GLY ALA GLY ALA GLY ALA GLY MET GLY SEQRES 2 A 397 GLN PRO THR THR THR SER LEU PHE MET ARG ASP VAL MET SEQRES 3 A 397 PHE HIS ARG MET THR GLY THR SER GLN ALA VAL ASN ASP SEQRES 4 A 397 VAL ALA THR LEU SER GLY GLU ARG ARG GLU ILE ILE ARG SEQRES 5 A 397 ARG ALA LEU ASN LYS LYS ILE LEU VAL PRO ASN ILE LEU SEQRES 6 A 397 GLU LEU MET PRO ALA TRP PRO SER GLU PHE GLN PRO ASN SEQRES 7 A 397 ILE ASP GLU VAL ASN VAL GLU ILE ASP GLU TRP LEU LYS SEQRES 8 A 397 THR VAL ASN VAL ALA LYS GLU LYS LYS LEU LYS HIS ARG SEQRES 9 A 397 ALA ARG GLY ASN TYR THR LEU LEU ALA GLY ILE TYR TYR SEQRES 10 A 397 PRO HIS CYS ARG LYS GLU LYS MET LEU ALA LEU SER GLN SEQRES 11 A 397 PHE LEU TYR TRP ILE PHE PHE TRP ASP ASP GLU ILE ASP SEQRES 12 A 397 THR GLY GLY GLU LEU THR GLU ASP ARG GLU GLY THR ILE SEQRES 13 A 397 LEU CYS CYS ALA GLU THR ASN LYS CYS ILE ASN ASP CYS SEQRES 14 A 397 LEU GLY PRO GLU PRO ASN TYR THR PRO PRO PRO GLY SER SEQRES 15 A 397 ARG GLY THR VAL GLU MET LEU TYR PRO ILE LEU ARG ASP SEQRES 16 A 397 LEU ARG ALA GLY LEU SER PRO VAL SER THR MET ARG LEU SEQRES 17 A 397 LYS GLN GLU LEU HIS ASP TYR VAL ASN GLY VAL LYS ASN SEQRES 18 A 397 GLN GLN LYS VAL ARG GLN GLU ASP HIS LEU PRO ASN PRO SEQRES 19 A 397 TRP ASP HIS PHE GLN MET ARG VAL ASP ASP VAL GLY VAL SEQRES 20 A 397 ILE PRO SER ILE THR GLN ASN GLU TYR ALA MET ASP PHE SEQRES 21 A 397 THR LEU PRO ASP TRP ILE ARG ARG HIS GLU ALA MET GLU SEQRES 22 A 397 GLU ILE VAL LEU GLN CYS THR LYS LEU THR ILE LEU LEU SEQRES 23 A 397 ASN GLU ILE LEU SER LEU GLN LYS GLU PHE ARG VAL SER SEQRES 24 A 397 GLN LEU GLU ASN LEU CYS LEU LEU PHE MET ASN THR TYR SEQRES 25 A 397 ASP MET SER ILE GLU GLN SER ILE HIS LYS VAL LEU GLY SEQRES 26 A 397 LEU LEU LYS ASP HIS TYR LYS ILE CYS ILE GLU ALA GLU SEQRES 27 A 397 ALA ARG LEU PRO TRP SER THR THR ASP GLU LYS LEU ASN SEQRES 28 A 397 ASN ASN ILE ARG GLU TYR ILE ARG GLY CYS GLN ARG LEU SEQRES 29 A 397 ALA THR GLY THR ALA CYS TRP SER TYR ASN CYS GLU ARG SEQRES 30 A 397 TYR PHE LYS LEU SER GLN LEU ASN ASP GLN GLN GLU LEU SEQRES 31 A 397 LEU LEU ASP LEU SER ARG THR SEQRES 1 B 397 GLY ALA GLY ALA GLY ALA GLY ALA GLY ALA GLY MET GLY SEQRES 2 B 397 GLN PRO THR THR THR SER LEU PHE MET ARG ASP VAL MET SEQRES 3 B 397 PHE HIS ARG MET THR GLY THR SER GLN ALA VAL ASN ASP SEQRES 4 B 397 VAL ALA THR LEU SER GLY GLU ARG ARG GLU ILE ILE ARG SEQRES 5 B 397 ARG ALA LEU ASN LYS LYS ILE LEU VAL PRO ASN ILE LEU SEQRES 6 B 397 GLU LEU MET PRO ALA TRP PRO SER GLU PHE GLN PRO ASN SEQRES 7 B 397 ILE ASP GLU VAL ASN VAL GLU ILE ASP GLU TRP LEU LYS SEQRES 8 B 397 THR VAL ASN VAL ALA LYS GLU LYS LYS LEU LYS HIS ARG SEQRES 9 B 397 ALA ARG GLY ASN TYR THR LEU LEU ALA GLY ILE TYR TYR SEQRES 10 B 397 PRO HIS CYS ARG LYS GLU LYS MET LEU ALA LEU SER GLN SEQRES 11 B 397 PHE LEU TYR TRP ILE PHE PHE TRP ASP ASP GLU ILE ASP SEQRES 12 B 397 THR GLY GLY GLU LEU THR GLU ASP ARG GLU GLY THR ILE SEQRES 13 B 397 LEU CYS CYS ALA GLU THR ASN LYS CYS ILE ASN ASP CYS SEQRES 14 B 397 LEU GLY PRO GLU PRO ASN TYR THR PRO PRO PRO GLY SER SEQRES 15 B 397 ARG GLY THR VAL GLU MET LEU TYR PRO ILE LEU ARG ASP SEQRES 16 B 397 LEU ARG ALA GLY LEU SER PRO VAL SER THR MET ARG LEU SEQRES 17 B 397 LYS GLN GLU LEU HIS ASP TYR VAL ASN GLY VAL LYS ASN SEQRES 18 B 397 GLN GLN LYS VAL ARG GLN GLU ASP HIS LEU PRO ASN PRO SEQRES 19 B 397 TRP ASP HIS PHE GLN MET ARG VAL ASP ASP VAL GLY VAL SEQRES 20 B 397 ILE PRO SER ILE THR GLN ASN GLU TYR ALA MET ASP PHE SEQRES 21 B 397 THR LEU PRO ASP TRP ILE ARG ARG HIS GLU ALA MET GLU SEQRES 22 B 397 GLU ILE VAL LEU GLN CYS THR LYS LEU THR ILE LEU LEU SEQRES 23 B 397 ASN GLU ILE LEU SER LEU GLN LYS GLU PHE ARG VAL SER SEQRES 24 B 397 GLN LEU GLU ASN LEU CYS LEU LEU PHE MET ASN THR TYR SEQRES 25 B 397 ASP MET SER ILE GLU GLN SER ILE HIS LYS VAL LEU GLY SEQRES 26 B 397 LEU LEU LYS ASP HIS TYR LYS ILE CYS ILE GLU ALA GLU SEQRES 27 B 397 ALA ARG LEU PRO TRP SER THR THR ASP GLU LYS LEU ASN SEQRES 28 B 397 ASN ASN ILE ARG GLU TYR ILE ARG GLY CYS GLN ARG LEU SEQRES 29 B 397 ALA THR GLY THR ALA CYS TRP SER TYR ASN CYS GLU ARG SEQRES 30 B 397 TYR PHE LYS LEU SER GLN LEU ASN ASP GLN GLN GLU LEU SEQRES 31 B 397 LEU LEU ASP LEU SER ARG THR HET FPP A 401 24 HET MLI A 402 7 HET GOL A 403 6 HET MLI A 404 7 HET MG A 405 1 HET FPP B 401 24 HET MLI B 402 7 HET MLI B 403 7 HET MLI B 404 7 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HET MG B 408 1 HET MG B 409 1 HETNAM FPP FARNESYL DIPHOSPHATE HETNAM MLI MALONATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FPP 2(C15 H28 O7 P2) FORMUL 4 MLI 5(C3 H2 O4 2-) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 MG 3(MG 2+) FORMUL 17 HOH *756(H2 O) HELIX 1 AA1 SER A 33 LEU A 44 1 12 HELIX 2 AA2 ASN A 52 MET A 57 5 6 HELIX 3 AA3 ASN A 67 VAL A 82 1 16 HELIX 4 AA4 ALA A 85 GLY A 96 1 12 HELIX 5 AA5 ASN A 97 TYR A 106 1 10 HELIX 6 AA6 ARG A 110 ASP A 132 1 23 HELIX 7 AA7 ARG A 141 GLY A 160 1 20 HELIX 8 AA8 ARG A 172 MET A 177 1 6 HELIX 9 AA9 MET A 177 GLY A 188 1 12 HELIX 10 AB1 SER A 190 ASN A 210 1 21 HELIX 11 AB2 ASN A 222 VAL A 234 1 13 HELIX 12 AB3 VAL A 236 MET A 247 1 12 HELIX 13 AB4 PRO A 252 ARG A 257 1 6 HELIX 14 AB5 HIS A 258 SER A 280 1 23 HELIX 15 AB6 SER A 280 VAL A 287 1 8 HELIX 16 AB7 ASN A 292 ASP A 302 1 11 HELIX 17 AB8 SER A 304 LEU A 330 1 27 HELIX 18 AB9 ASP A 336 TYR A 362 1 27 HELIX 19 AC1 LYS A 369 LEU A 373 5 5 HELIX 20 AC2 SER B 33 LEU B 44 1 12 HELIX 21 AC3 ASN B 52 MET B 57 5 6 HELIX 22 AC4 ASN B 67 VAL B 82 1 16 HELIX 23 AC5 ALA B 85 GLY B 96 1 12 HELIX 24 AC6 ASN B 97 TYR B 106 1 10 HELIX 25 AC7 ARG B 110 ILE B 131 1 22 HELIX 26 AC8 ARG B 141 GLY B 160 1 20 HELIX 27 AC9 ARG B 172 MET B 177 1 6 HELIX 28 AD1 MET B 177 GLY B 188 1 12 HELIX 29 AD2 SER B 190 ASN B 210 1 21 HELIX 30 AD3 ASN B 222 VAL B 234 1 13 HELIX 31 AD4 GLY B 235 MET B 247 1 13 HELIX 32 AD5 PRO B 252 ARG B 257 1 6 HELIX 33 AD6 HIS B 258 SER B 280 1 23 HELIX 34 AD7 SER B 280 VAL B 287 1 8 HELIX 35 AD8 ASN B 292 ASP B 302 1 11 HELIX 36 AD9 SER B 304 LEU B 330 1 27 HELIX 37 AE1 ASP B 336 TYR B 362 1 27 HELIX 38 AE2 LYS B 369 LEU B 373 5 5 SHEET 1 AA1 2 LYS A 47 VAL A 50 0 SHEET 2 AA1 2 LEU A 379 ASP A 382 -1 O LEU A 379 N VAL A 50 SHEET 1 AA2 2 LYS B 47 VAL B 50 0 SHEET 2 AA2 2 LEU B 379 ASP B 382 -1 O LEU B 379 N VAL B 50 LINK OD1 ASN A 276 MG MG A 405 1555 1555 2.59 LINK OG SER A 280 MG MG A 405 1555 1555 2.66 LINK OE2 GLU A 284 MG MG A 405 1555 1555 2.20 LINK O2A FPP A 401 MG MG A 405 1555 1555 2.05 LINK O1B FPP A 401 MG MG A 405 1555 1555 2.11 LINK MG MG A 405 O HOH A 523 1555 1555 2.56 LINK OD1 ASN B 276 MG MG B 408 1555 1555 2.52 LINK OG SER B 280 MG MG B 408 1555 1555 2.64 LINK OE2 GLU B 284 MG MG B 408 1555 1555 2.32 LINK OE2 GLU B 284 MG MG B 409 1555 1555 2.98 LINK O2A FPP B 401 MG MG B 408 1555 1555 1.98 LINK O1B FPP B 401 MG MG B 408 1555 1555 2.58 LINK O3A FPP B 401 MG MG B 409 1555 1555 2.84 LINK MG MG B 408 O HOH B 621 1555 1555 2.21 LINK MG MG B 409 O HOH B 729 1555 1555 1.70 CRYST1 54.638 98.336 72.379 90.00 94.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018302 0.000000 0.001488 0.00000 SCALE2 0.000000 0.010169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013862 0.00000