HEADER TRANSFERASE 30-NOV-21 7W5O TITLE CRYSTAL STRUCTURE OF ERK2 WITH AN ALLOSTERIC INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS PROTEIN KINASE, ALLOSTERIC INHIBITOR, ACTIVATION LOOP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YOSHIDA,T.KINOSHITA REVDAT 2 29-NOV-23 7W5O 1 REMARK REVDAT 1 23-FEB-22 7W5O 0 JRNL AUTH M.YOSHIDA,H.NAGAO,H.SUGIYAMA,M.SAWA,T.KINOSHITA JRNL TITL IDENTIFICATION OF A NOVEL TARGET SITE FOR ATP-INDEPENDENT JRNL TITL 2 ERK2 INHIBITORS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 593 73 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 35063772 JRNL DOI 10.1016/J.BBRC.2022.01.035 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3200 - 5.3800 1.00 3554 159 0.2045 0.2442 REMARK 3 2 5.3800 - 4.2700 1.00 3339 150 0.1899 0.2329 REMARK 3 3 4.2700 - 3.7300 1.00 3290 147 0.1947 0.2498 REMARK 3 4 3.7300 - 3.3900 1.00 3280 147 0.2280 0.3140 REMARK 3 5 3.3900 - 3.1500 1.00 3239 145 0.2414 0.2700 REMARK 3 6 3.1500 - 2.9600 1.00 3215 142 0.2591 0.3479 REMARK 3 7 2.9600 - 2.8100 1.00 3228 146 0.2734 0.3740 REMARK 3 8 2.8100 - 2.6900 1.00 3198 143 0.2816 0.3233 REMARK 3 9 2.6900 - 2.5900 1.00 3180 142 0.2830 0.3498 REMARK 3 10 2.5900 - 2.5000 1.00 3223 144 0.2980 0.3324 REMARK 3 11 2.5000 - 2.4200 1.00 3205 144 0.3099 0.3628 REMARK 3 12 2.4200 - 2.3500 0.99 3140 140 0.3461 0.3948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.365 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.559 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5990 REMARK 3 ANGLE : 1.087 8119 REMARK 3 CHIRALITY : 0.059 873 REMARK 3 PLANARITY : 0.010 1039 REMARK 3 DIHEDRAL : 23.708 2259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300025538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : MIRRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 99.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE, HEPES, PEGMME5000, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.22000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.40600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.40600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.61000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.40600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.40600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 205.83000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.40600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.40600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.61000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.40600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.40600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 205.83000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 137.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 ASP A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 ASP A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 GLY B -7 REMARK 465 ASP B -6 REMARK 465 LEU B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 ASP B -2 REMARK 465 GLU B -1 REMARK 465 LEU B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 TYR B 358 REMARK 465 ARG B 359 REMARK 465 SER B 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 350 O HOH A 501 2.07 REMARK 500 OD2 ASP A 111 O3' 5ID A 401 2.08 REMARK 500 O ARG A 261 O HOH A 502 2.12 REMARK 500 NH1 ARG B 24 OD2 ASP B 44 2.14 REMARK 500 O ASP B 179 NZ LYS B 203 2.17 REMARK 500 O HOH A 531 O HOH A 550 2.18 REMARK 500 O HOH B 712 O HOH B 715 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 155.81 74.57 REMARK 500 MET A 13 -95.42 -151.09 REMARK 500 VAL A 14 130.67 70.58 REMARK 500 ARG A 15 117.42 -27.15 REMARK 500 ASP A 20 28.92 -74.78 REMARK 500 SER A 29 108.81 -168.94 REMARK 500 THR A 110 -164.65 -161.70 REMARK 500 ARG A 148 -6.27 81.95 REMARK 500 ASP A 149 44.09 -141.18 REMARK 500 ASP A 167 83.45 57.89 REMARK 500 HIS A 178 5.63 -69.71 REMARK 500 ALA A 189 139.94 77.53 REMARK 500 CYS A 254 24.33 -77.73 REMARK 500 ASN A 257 78.73 -49.24 REMARK 500 ARG A 261 96.53 -56.88 REMARK 500 ASN A 262 -68.81 171.50 REMARK 500 HIS A 269 126.55 -35.94 REMARK 500 LEU A 294 51.75 -96.71 REMARK 500 ASP A 318 80.51 -160.43 REMARK 500 PRO A 328 143.28 -34.24 REMARK 500 TYR A 358 110.99 -39.30 REMARK 500 MET B 13 -40.11 92.87 REMARK 500 VAL B 14 -132.47 39.40 REMARK 500 ASP B 20 47.65 -67.94 REMARK 500 SER B 29 1.02 -158.34 REMARK 500 TYR B 30 128.35 59.32 REMARK 500 TYR B 36 18.53 -147.97 REMARK 500 ALA B 42 -135.15 -110.32 REMARK 500 TYR B 43 110.22 -164.94 REMARK 500 LYS B 48 34.67 34.00 REMARK 500 THR B 63 -55.87 143.01 REMARK 500 HIS B 80 139.74 -175.96 REMARK 500 ASP B 88 139.36 -174.68 REMARK 500 ARG B 91 -138.87 -109.86 REMARK 500 THR B 110 -164.11 -175.24 REMARK 500 ARG B 148 -2.76 81.11 REMARK 500 ASP B 149 37.24 -143.54 REMARK 500 ASN B 158 -65.38 -107.54 REMARK 500 ASP B 162 83.79 -150.23 REMARK 500 ASP B 167 79.04 60.79 REMARK 500 ASP B 175 65.22 -167.83 REMARK 500 HIS B 180 -102.94 -125.57 REMARK 500 THR B 181 142.72 -26.52 REMARK 500 PHE B 183 -56.82 106.37 REMARK 500 ALA B 189 140.06 67.74 REMARK 500 LEU B 200 149.35 65.01 REMARK 500 ASN B 201 51.11 3.13 REMARK 500 SER B 202 100.57 -14.53 REMARK 500 ILE B 243 -56.33 -121.83 REMARK 500 GLN B 249 81.94 -61.10 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 332 MET B 333 -148.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 191 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7W5O A 1 360 UNP P28482 MK01_HUMAN 1 360 DBREF 7W5O B 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 7W5O GLY A -7 UNP P28482 EXPRESSION TAG SEQADV 7W5O ASP A -6 UNP P28482 EXPRESSION TAG SEQADV 7W5O LEU A -5 UNP P28482 EXPRESSION TAG SEQADV 7W5O GLY A -4 UNP P28482 EXPRESSION TAG SEQADV 7W5O SER A -3 UNP P28482 EXPRESSION TAG SEQADV 7W5O ASP A -2 UNP P28482 EXPRESSION TAG SEQADV 7W5O GLU A -1 UNP P28482 EXPRESSION TAG SEQADV 7W5O LEU A 0 UNP P28482 EXPRESSION TAG SEQADV 7W5O GLY B -7 UNP P28482 EXPRESSION TAG SEQADV 7W5O ASP B -6 UNP P28482 EXPRESSION TAG SEQADV 7W5O LEU B -5 UNP P28482 EXPRESSION TAG SEQADV 7W5O GLY B -4 UNP P28482 EXPRESSION TAG SEQADV 7W5O SER B -3 UNP P28482 EXPRESSION TAG SEQADV 7W5O ASP B -2 UNP P28482 EXPRESSION TAG SEQADV 7W5O GLU B -1 UNP P28482 EXPRESSION TAG SEQADV 7W5O LEU B 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 368 GLY ASP LEU GLY SER ASP GLU LEU MET ALA ALA ALA ALA SEQRES 2 A 368 ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN VAL SEQRES 3 A 368 PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR ILE SEQRES 4 A 368 GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR ASP SEQRES 5 A 368 ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SER SEQRES 6 A 368 PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU ARG SEQRES 7 A 368 GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE SEQRES 8 A 368 ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE GLU SEQRES 9 A 368 GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET GLU SEQRES 10 A 368 THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SER SEQRES 11 A 368 ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG SEQRES 12 A 368 GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS ARG SEQRES 13 A 368 ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR CYS SEQRES 14 A 368 ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL ALA SEQRES 15 A 368 ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU TYR SEQRES 16 A 368 VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET LEU SEQRES 17 A 368 ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SER SEQRES 18 A 368 VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG PRO SEQRES 19 A 368 ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN HIS SEQRES 20 A 368 ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP LEU SEQRES 21 A 368 ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU LEU SEQRES 22 A 368 SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG LEU SEQRES 23 A 368 PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU ASP SEQRES 24 A 368 LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU VAL SEQRES 25 A 368 GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR TYR SEQRES 26 A 368 ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE LYS SEQRES 27 A 368 PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS LEU SEQRES 28 A 368 LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN PRO SEQRES 29 A 368 GLY TYR ARG SER SEQRES 1 B 368 GLY ASP LEU GLY SER ASP GLU LEU MET ALA ALA ALA ALA SEQRES 2 B 368 ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN VAL SEQRES 3 B 368 PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR ILE SEQRES 4 B 368 GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR ASP SEQRES 5 B 368 ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SER SEQRES 6 B 368 PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU ARG SEQRES 7 B 368 GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE SEQRES 8 B 368 ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE GLU SEQRES 9 B 368 GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET GLU SEQRES 10 B 368 THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SER SEQRES 11 B 368 ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG SEQRES 12 B 368 GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS ARG SEQRES 13 B 368 ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR CYS SEQRES 14 B 368 ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL ALA SEQRES 15 B 368 ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU TYR SEQRES 16 B 368 VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET LEU SEQRES 17 B 368 ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SER SEQRES 18 B 368 VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG PRO SEQRES 19 B 368 ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN HIS SEQRES 20 B 368 ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP LEU SEQRES 21 B 368 ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU LEU SEQRES 22 B 368 SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG LEU SEQRES 23 B 368 PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU ASP SEQRES 24 B 368 LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU VAL SEQRES 25 B 368 GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR TYR SEQRES 26 B 368 ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE LYS SEQRES 27 B 368 PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS LEU SEQRES 28 B 368 LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN PRO SEQRES 29 B 368 GLY TYR ARG SER MODRES 7W5O NEP A 125 HIS MODIFIED RESIDUE MODRES 7W5O NEP B 125 HIS MODIFIED RESIDUE HET NEP A 125 14 HET NEP B 125 14 HET 5ID A 401 33 HET MLA A 402 9 HET SIN A 403 12 HET NA A 404 1 HET SIN A 405 12 HET MLA A 406 9 HET MLA A 407 9 HET EPE A 408 32 HET MLA B 601 9 HET TAR B 602 14 HET MLA B 603 9 HET MLA B 604 9 HET EPE B 605 32 HET 6GI B 606 59 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM 5ID (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- HETNAM 2 5ID D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3, HETNAM 3 5ID 4-DIOL HETNAM MLA MALONIC ACID HETNAM SIN SUCCINIC ACID HETNAM NA SODIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM TAR D(-)-TARTARIC ACID HETNAM 6GI 13-[4-({IMIDAZO[1,2-A]PYRIDIN-2-YL}METHOXY)PHENYL]-4,8- HETNAM 2 6GI DIOXA-12,14,16,18-TETRAAZATETRACYCLO[9.7.0.0^{3, HETNAM 3 6GI 9}.0^{12,17}]OCTADECA-1(11),2,9,15,17-PENTAEN-15-AMINE HETSYN 5ID 5-IODOTUBERCIDIN HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN EPE HEPES FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 5ID C11 H13 I N4 O4 FORMUL 4 MLA 6(C3 H4 O4) FORMUL 5 SIN 2(C4 H6 O4) FORMUL 6 NA NA 1+ FORMUL 10 EPE 2(C8 H18 N2 O4 S) FORMUL 12 TAR C4 H6 O6 FORMUL 16 6GI C26 H23 N7 O3 FORMUL 17 HOH *119(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 LYS A 117 1 6 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 GLY A 182 GLU A 186 5 5 HELIX 6 AA6 THR A 190 ARG A 194 5 5 HELIX 7 AA7 ALA A 195 SER A 202 1 8 HELIX 8 AA8 LYS A 207 ASN A 224 1 18 HELIX 9 AA9 HIS A 232 GLY A 245 1 14 HELIX 10 AB1 GLN A 249 ASN A 253 5 5 HELIX 11 AB2 PRO A 274 PHE A 279 1 6 HELIX 12 AB3 ASP A 283 LEU A 294 1 12 HELIX 13 AB4 ASN A 297 ARG A 301 5 5 HELIX 14 AB5 GLU A 303 ALA A 309 1 7 HELIX 15 AB6 HIS A 310 GLU A 314 5 5 HELIX 16 AB7 ASP A 318 GLU A 322 5 5 HELIX 17 AB8 PRO A 339 THR A 351 1 13 HELIX 18 AB9 ALA A 352 GLN A 355 5 4 HELIX 19 AC1 THR B 63 PHE B 78 1 16 HELIX 20 AC2 THR B 94 MET B 98 5 5 HELIX 21 AC3 LEU B 112 LYS B 117 1 6 HELIX 22 AC4 SER B 122 ALA B 143 1 22 HELIX 23 AC5 LYS B 151 SER B 153 5 3 HELIX 24 AC6 THR B 190 ARG B 194 5 5 HELIX 25 AC7 LYS B 207 ASN B 224 1 18 HELIX 26 AC8 HIS B 232 GLY B 245 1 14 HELIX 27 AC9 GLU B 250 CYS B 254 5 5 HELIX 28 AD1 ASN B 257 SER B 266 1 10 HELIX 29 AD2 PRO B 274 PHE B 279 1 6 HELIX 30 AD3 ASP B 283 LEU B 294 1 12 HELIX 31 AD4 ASN B 297 ARG B 301 5 5 HELIX 32 AD5 GLU B 303 ALA B 309 1 7 HELIX 33 AD6 HIS B 310 GLU B 314 5 5 HELIX 34 AD7 ASP B 318 GLU B 322 5 5 HELIX 35 AD8 PRO B 339 THR B 351 1 13 HELIX 36 AD9 ALA B 352 GLN B 355 5 4 SHEET 1 AA1 5 TYR A 25 GLU A 33 0 SHEET 2 AA1 5 MET A 38 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 AA1 5 VAL A 49 ILE A 56 -1 O VAL A 51 N ALA A 42 SHEET 4 AA1 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 AA1 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 AA2 3 THR A 110 ASP A 111 0 SHEET 2 AA2 3 LEU A 155 THR A 159 -1 O LEU A 157 N THR A 110 SHEET 3 AA2 3 ASP A 162 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA3 2 VAL A 145 LEU A 146 0 SHEET 2 AA3 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 SHEET 1 AA4 5 GLY B 32 GLU B 33 0 SHEET 2 AA4 5 GLY B 37 SER B 41 -1 O VAL B 39 N GLY B 32 SHEET 3 AA4 5 ALA B 52 ILE B 56 -1 O LYS B 55 N MET B 38 SHEET 4 AA4 5 VAL B 101 GLN B 105 -1 O ILE B 103 N LYS B 54 SHEET 5 AA4 5 ASP B 88 ILE B 90 -1 N ASP B 88 O VAL B 104 SHEET 1 AA5 3 THR B 110 ASP B 111 0 SHEET 2 AA5 3 LEU B 155 LEU B 157 -1 O LEU B 157 N THR B 110 SHEET 3 AA5 3 LEU B 163 ILE B 165 -1 O LYS B 164 N LEU B 156 SHEET 1 AA6 2 VAL B 145 LEU B 146 0 SHEET 2 AA6 2 ARG B 172 VAL B 173 -1 O ARG B 172 N LEU B 146 LINK C ASP A 124 N NEP A 125 1555 1555 1.32 LINK C NEP A 125 N ILE A 126 1555 1555 1.32 LINK C ASP B 124 N NEP B 125 1555 1555 1.32 LINK C NEP B 125 N ILE B 126 1555 1555 1.32 CISPEP 1 GLY A 22 PRO A 23 0 7.07 CRYST1 82.812 82.812 274.440 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003644 0.00000