HEADER METAL TRANSPORT 07-DEC-21 7W81 TITLE CRYSTAL STRUCTURE OF THE HEME-BOUND FORM OF THE LINKER-NEAT3 REGION OF TITLE 2 ISDH FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-REGULATED SURFACE DETERMINANT PROTEIN H; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HAPTOGLOBIN RECEPTOR A,STAPHYLOCOCCUS AUREUS SURFACE PROTEIN COMPND 5 I; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN MU50 / ATCC SOURCE 3 700699); SOURCE 4 ORGANISM_TAXID: 158878; SOURCE 5 GENE: ISDH, HARA, SASI, SAV1731; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS IRON ACQUISITION, ANTIMICROBIAL, HEMOGLOBIN, ISD SYSTEM, KEYWDS 2 STAPHYLOCOCCUS AUREUS, HEME, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,N.VU,K.TSUMOTO REVDAT 2 29-NOV-23 7W81 1 REMARK REVDAT 1 19-OCT-22 7W81 0 JRNL AUTH S.VALENCIANO-BELLIDO,J.M.M.CAAVEIRO,K.MORANTE,T.SUSHKO, JRNL AUTH 2 M.NAKAKIDO,S.NAGATOISHI,K.TSUMOTO JRNL TITL STRUCTURE AND ROLE OF THE LINKER DOMAIN OF THE IRON JRNL TITL 2 SURFACE-DETERMINANT PROTEIN ISDH IN HEME TRANSPORTATION IN JRNL TITL 3 STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 298 01995 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35500652 JRNL DOI 10.1016/J.JBC.2022.101995 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 41691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3170 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2919 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4329 ; 2.015 ; 1.751 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6815 ; 1.476 ; 1.609 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 7.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;39.859 ;24.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ;14.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;29.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3474 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 580 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 476 654 B 476 654 5918 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 476 A 700 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7895 -18.4211 -21.4064 REMARK 3 T TENSOR REMARK 3 T11: 0.0186 T22: 0.0163 REMARK 3 T33: 0.1033 T12: -0.0035 REMARK 3 T13: 0.0247 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.1493 L22: 0.9693 REMARK 3 L33: 2.8984 L12: 0.1777 REMARK 3 L13: 0.4563 L23: -0.2109 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0371 S13: 0.1034 REMARK 3 S21: 0.0056 S22: -0.0257 S23: 0.0298 REMARK 3 S31: 0.1867 S32: -0.1353 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 476 B 700 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3976 2.2430 -44.1467 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.0548 REMARK 3 T33: 0.0724 T12: -0.0170 REMARK 3 T13: 0.0032 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 2.6251 L22: 2.8364 REMARK 3 L33: 1.0801 L12: -0.1713 REMARK 3 L13: -0.1607 L23: -0.1132 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0989 S13: -0.1930 REMARK 3 S21: -0.0990 S22: -0.1015 S23: -0.2651 REMARK 3 S31: -0.0457 S32: 0.1039 S33: 0.0578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7W81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.0.9 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.5 REMARK 200 STARTING MODEL: 3VTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM POTASSIUM CHLORIDE, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 656 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 551 O HOH A 801 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 522 CD GLU B 522 OE2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 534 -73.66 -125.95 REMARK 500 PHE B 534 -69.51 -128.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 700 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 642 OH REMARK 620 2 HEM A 700 NA 96.4 REMARK 620 3 HEM A 700 NB 97.5 88.9 REMARK 620 4 HEM A 700 NC 100.4 163.2 89.2 REMARK 620 5 HEM A 700 ND 98.9 87.5 163.4 89.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 700 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 642 OH REMARK 620 2 HEM B 700 NA 95.1 REMARK 620 3 HEM B 700 NB 97.4 88.8 REMARK 620 4 HEM B 700 NC 104.1 160.7 90.2 REMARK 620 5 HEM B 700 ND 97.9 85.3 164.0 90.5 REMARK 620 N 1 2 3 4 DBREF 7W81 A 476 656 UNP Q931P4 ISDH_STAAM 476 656 DBREF 7W81 B 476 656 UNP Q931P4 ISDH_STAAM 476 656 SEQRES 1 A 181 ASN LEU GLN LYS LEU LEU ALA PRO TYR HIS LYS ALA LYS SEQRES 2 A 181 THR LEU GLU ARG GLN VAL TYR GLU LEU GLU LYS LEU GLN SEQRES 3 A 181 GLU LYS LEU PRO GLU LYS TYR LYS ALA GLU TYR LYS LYS SEQRES 4 A 181 LYS LEU ASP GLN THR ARG VAL GLU LEU ALA ASP GLN VAL SEQRES 5 A 181 LYS SER ALA VAL THR GLU PHE GLU ASN VAL THR PRO THR SEQRES 6 A 181 ASN ASP GLN LEU THR ASP LEU GLN GLU ALA HIS PHE VAL SEQRES 7 A 181 VAL PHE GLU SER GLU GLU ASN SER GLU SER VAL MET ASP SEQRES 8 A 181 GLY PHE VAL GLU HIS PRO PHE TYR THR ALA THR LEU ASN SEQRES 9 A 181 GLY GLN LYS TYR VAL VAL MET LYS THR LYS ASP ASP SER SEQRES 10 A 181 TYR TRP LYS ASP LEU ILE VAL GLU GLY LYS ARG VAL THR SEQRES 11 A 181 THR VAL SER LYS ASP PRO LYS ASN ASN SER ARG THR LEU SEQRES 12 A 181 ILE PHE PRO TYR ILE PRO ASP LYS ALA VAL TYR ASN ALA SEQRES 13 A 181 ILE VAL LYS VAL VAL VAL ALA ASN ILE GLY TYR GLU GLY SEQRES 14 A 181 GLN TYR HIS VAL ARG ILE ILE ASN GLN ASP ILE ASN SEQRES 1 B 181 ASN LEU GLN LYS LEU LEU ALA PRO TYR HIS LYS ALA LYS SEQRES 2 B 181 THR LEU GLU ARG GLN VAL TYR GLU LEU GLU LYS LEU GLN SEQRES 3 B 181 GLU LYS LEU PRO GLU LYS TYR LYS ALA GLU TYR LYS LYS SEQRES 4 B 181 LYS LEU ASP GLN THR ARG VAL GLU LEU ALA ASP GLN VAL SEQRES 5 B 181 LYS SER ALA VAL THR GLU PHE GLU ASN VAL THR PRO THR SEQRES 6 B 181 ASN ASP GLN LEU THR ASP LEU GLN GLU ALA HIS PHE VAL SEQRES 7 B 181 VAL PHE GLU SER GLU GLU ASN SER GLU SER VAL MET ASP SEQRES 8 B 181 GLY PHE VAL GLU HIS PRO PHE TYR THR ALA THR LEU ASN SEQRES 9 B 181 GLY GLN LYS TYR VAL VAL MET LYS THR LYS ASP ASP SER SEQRES 10 B 181 TYR TRP LYS ASP LEU ILE VAL GLU GLY LYS ARG VAL THR SEQRES 11 B 181 THR VAL SER LYS ASP PRO LYS ASN ASN SER ARG THR LEU SEQRES 12 B 181 ILE PHE PRO TYR ILE PRO ASP LYS ALA VAL TYR ASN ALA SEQRES 13 B 181 ILE VAL LYS VAL VAL VAL ALA ASN ILE GLY TYR GLU GLY SEQRES 14 B 181 GLN TYR HIS VAL ARG ILE ILE ASN GLN ASP ILE ASN HET HEM A 700 43 HET HEM B 700 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *380(H2 O) HELIX 1 AA1 ASN A 476 LEU A 481 1 6 HELIX 2 AA2 LEU A 481 ALA A 487 1 7 HELIX 3 AA3 THR A 489 GLN A 501 1 13 HELIX 4 AA4 GLU A 502 LEU A 504 5 3 HELIX 5 AA5 PRO A 505 LYS A 507 5 3 HELIX 6 AA6 TYR A 508 PHE A 534 1 27 HELIX 7 AA7 SER A 563 VAL A 569 5 7 HELIX 8 AA8 ASP A 590 SER A 592 5 3 HELIX 9 AA9 PRO A 611 ASN A 614 5 4 HELIX 10 AB1 ALA A 638 GLY A 641 5 4 HELIX 11 AB2 LEU B 477 LEU B 481 1 5 HELIX 12 AB3 LEU B 481 ALA B 487 1 7 HELIX 13 AB4 THR B 489 GLN B 501 1 13 HELIX 14 AB5 GLU B 502 LEU B 504 5 3 HELIX 15 AB6 PRO B 505 LYS B 507 5 3 HELIX 16 AB7 TYR B 508 PHE B 534 1 27 HELIX 17 AB8 SER B 563 PHE B 568 1 6 HELIX 18 AB9 ASP B 590 SER B 592 5 3 HELIX 19 AC1 PRO B 611 ASN B 614 5 4 HELIX 20 AC2 ALA B 638 GLY B 641 5 4 SHEET 1 AA1 5 THR A 545 GLU A 549 0 SHEET 2 AA1 5 TYR A 574 LEU A 578 -1 O THR A 577 N THR A 545 SHEET 3 AA1 5 GLN A 581 LYS A 587 -1 O VAL A 585 N TYR A 574 SHEET 4 AA1 5 SER A 615 PRO A 621 -1 O PHE A 620 N VAL A 584 SHEET 5 AA1 5 THR A 605 ASP A 610 -1 N ASP A 610 O SER A 615 SHEET 1 AA2 5 PHE A 552 GLU A 556 0 SHEET 2 AA2 5 TYR A 642 ASN A 652 -1 O ILE A 651 N VAL A 553 SHEET 3 AA2 5 VAL A 628 VAL A 637 -1 N TYR A 629 O ILE A 650 SHEET 4 AA2 5 TRP A 594 VAL A 599 -1 N LYS A 595 O LYS A 634 SHEET 5 AA2 5 LYS A 602 ARG A 603 -1 O LYS A 602 N VAL A 599 SHEET 1 AA3 5 THR B 545 ALA B 550 0 SHEET 2 AA3 5 PHE B 573 LEU B 578 -1 O THR B 577 N THR B 545 SHEET 3 AA3 5 GLN B 581 LYS B 587 -1 O TYR B 583 N ALA B 576 SHEET 4 AA3 5 SER B 615 PRO B 621 -1 O PHE B 620 N VAL B 584 SHEET 5 AA3 5 THR B 605 ASP B 610 -1 N ASP B 610 O SER B 615 SHEET 1 AA4 5 PHE B 552 GLU B 556 0 SHEET 2 AA4 5 TYR B 642 ASN B 652 -1 O ILE B 651 N VAL B 553 SHEET 3 AA4 5 VAL B 628 VAL B 637 -1 N TYR B 629 O ILE B 650 SHEET 4 AA4 5 TRP B 594 VAL B 599 -1 N LYS B 595 O LYS B 634 SHEET 5 AA4 5 LYS B 602 ARG B 603 -1 O LYS B 602 N VAL B 599 LINK OH TYR A 642 FE HEM A 700 1555 1555 2.09 LINK OH TYR B 642 FE HEM B 700 1555 1555 2.02 CISPEP 1 HIS A 571 PRO A 572 0 -4.34 CISPEP 2 HIS B 571 PRO B 572 0 -0.99 CRYST1 49.910 95.310 99.440 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010056 0.00000