HEADER PLANT PROTEIN 07-DEC-21 7W82 TITLE CRYSTAL STRUCTURE OF MAIZE RDR2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAIZE RDR2; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_TAXID: 4577; SOURCE 4 GENE: MOP1, 100502460, ZEAMMB73_ZM00001D003378; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTB KEYWDS RDR2, RDDM, RNA POLYMERASE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.DU,Z.YANG,J.DU REVDAT 1 08-JUN-22 7W82 0 JRNL AUTH X.DU,Z.YANG,A.J.F.ARIZA,Q.WANG,G.XIE,S.LI,J.DU JRNL TITL STRUCTURE OF PLANT RNA-DEPENDENT RNA POLYMERASE 2, AN ENZYME JRNL TITL 2 INVOLVED IN SMALL INTERFERING RNA PRODUCTION. JRNL REF PLANT CELL V. 34 2140 2022 JRNL REFN ESSN 1532-298X JRNL PMID 35188193 JRNL DOI 10.1093/PLCELL/KOAC067 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0000 - 6.6720 0.97 2666 124 0.1807 0.2216 REMARK 3 2 6.6720 - 5.2988 1.00 2596 134 0.2250 0.2653 REMARK 3 3 5.2988 - 4.6299 1.00 2568 152 0.1936 0.2546 REMARK 3 4 4.6299 - 4.2070 1.00 2573 147 0.1874 0.2332 REMARK 3 5 4.2070 - 3.9057 1.00 2561 119 0.2259 0.2606 REMARK 3 6 3.9057 - 3.6755 1.00 2577 132 0.2833 0.3067 REMARK 3 7 3.6755 - 3.4915 0.99 2540 135 0.3277 0.3475 REMARK 3 8 3.4915 - 3.3396 1.00 2522 137 0.2956 0.3465 REMARK 3 9 3.3396 - 3.2111 1.00 2526 153 0.3218 0.3227 REMARK 3 10 3.2111 - 3.1003 1.00 2558 122 0.3190 0.3651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7658 REMARK 3 ANGLE : 1.291 10352 REMARK 3 CHIRALITY : 0.069 1138 REMARK 3 PLANARITY : 0.010 1332 REMARK 3 DIHEDRAL : 18.345 2856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.7596 186.4313 360.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.6130 T22: 0.4547 REMARK 3 T33: 0.7002 T12: -0.1485 REMARK 3 T13: 0.0005 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.0655 L22: 1.4270 REMARK 3 L33: 3.5568 L12: 0.1325 REMARK 3 L13: -0.3608 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: 0.0438 S13: 0.3689 REMARK 3 S21: -0.0048 S22: 0.0089 S23: -0.1489 REMARK 3 S31: -0.6521 S32: 0.4899 S33: 0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 474 THROUGH 739 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.6949 160.9299 379.4593 REMARK 3 T TENSOR REMARK 3 T11: 0.6078 T22: 0.6041 REMARK 3 T33: 0.5204 T12: 0.0162 REMARK 3 T13: 0.0780 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.6898 L22: 0.8917 REMARK 3 L33: 1.8693 L12: -0.1589 REMARK 3 L13: 0.0579 L23: -0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.2001 S13: 0.0077 REMARK 3 S21: 0.2511 S22: -0.0281 S23: 0.0583 REMARK 3 S31: 0.2010 S32: -0.0535 S33: 0.0268 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 740 THROUGH 892 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.5376 149.4957 378.4385 REMARK 3 T TENSOR REMARK 3 T11: 0.7670 T22: 0.5488 REMARK 3 T33: 0.4546 T12: 0.0664 REMARK 3 T13: 0.0463 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.0118 L22: 2.9636 REMARK 3 L33: 2.1331 L12: 0.7392 REMARK 3 L13: 0.1228 L23: 0.3567 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: -0.4107 S13: -0.0739 REMARK 3 S21: 0.3684 S22: -0.0690 S23: -0.0326 REMARK 3 S31: 0.5022 S32: 0.0377 S33: 0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 893 THROUGH 1111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4601 170.1454 361.6183 REMARK 3 T TENSOR REMARK 3 T11: 0.5826 T22: 0.5653 REMARK 3 T33: 0.6887 T12: 0.0192 REMARK 3 T13: 0.0349 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.1666 L22: 2.7169 REMARK 3 L33: 2.2585 L12: -0.9175 REMARK 3 L13: 0.0441 L23: 0.4515 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.0755 S13: 0.4671 REMARK 3 S21: 0.0161 S22: -0.0613 S23: 0.1503 REMARK 3 S31: -0.1497 S32: -0.3380 S33: 0.1019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27101 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M SODIUM CITRATE, 0.1M MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 74.51800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.02299 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 115.15767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 74.51800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.02299 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 115.15767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 74.51800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.02299 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 115.15767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 74.51800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 43.02299 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 115.15767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 74.51800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 43.02299 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 115.15767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 74.51800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 43.02299 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 115.15767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.04597 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 230.31533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 86.04597 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 230.31533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 86.04597 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 230.31533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 86.04597 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 230.31533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 86.04597 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 230.31533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 86.04597 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 230.31533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 104 REMARK 465 MET A 105 REMARK 465 GLY A 106 REMARK 465 SER A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 THR A 198 REMARK 465 VAL A 199 REMARK 465 LYS A 200 REMARK 465 SER A 201 REMARK 465 ARG A 202 REMARK 465 PHE A 203 REMARK 465 THR A 204 REMARK 465 ASP A 205 REMARK 465 ASP A 206 REMARK 465 ARG A 207 REMARK 465 PHE A 208 REMARK 465 HIS A 209 REMARK 465 ALA A 210 REMARK 465 CYS A 211 REMARK 465 LYS A 212 REMARK 465 GLU A 213 REMARK 465 ASP A 214 REMARK 465 ALA A 215 REMARK 465 LYS A 216 REMARK 465 PHE A 217 REMARK 465 ALA A 218 REMARK 465 MET A 268 REMARK 465 ASP A 269 REMARK 465 VAL A 270 REMARK 465 PHE A 271 REMARK 465 GLY A 272 REMARK 465 SER A 273 REMARK 465 SER A 274 REMARK 465 SER A 275 REMARK 465 MET A 357 REMARK 465 ARG A 358 REMARK 465 LYS A 359 REMARK 465 LYS A 360 REMARK 465 ALA A 361 REMARK 465 LEU A 362 REMARK 465 SER A 363 REMARK 465 ASN A 364 REMARK 465 LYS A 365 REMARK 465 ARG A 366 REMARK 465 GLU A 367 REMARK 465 SER A 368 REMARK 465 GLY A 369 REMARK 465 ARG A 429 REMARK 465 THR A 430 REMARK 465 GLU A 431 REMARK 465 GLN A 432 REMARK 465 GLY A 433 REMARK 465 PHE A 434 REMARK 465 PHE A 435 REMARK 465 SER A 436 REMARK 465 ASP A 964 REMARK 465 ALA A 965 REMARK 465 ALA A 966 REMARK 465 ALA A 967 REMARK 465 LEU A 968 REMARK 465 LEU A 969 REMARK 465 PRO A 970 REMARK 465 ALA A 971 REMARK 465 ARG A 1112 REMARK 465 LYS A 1113 REMARK 465 ARG A 1114 REMARK 465 VAL A 1115 REMARK 465 GLU A 1116 REMARK 465 ASP A 1117 REMARK 465 ALA A 1118 REMARK 465 ALA A 1119 REMARK 465 VAL A 1120 REMARK 465 PRO A 1121 REMARK 465 MET A 1122 REMARK 465 ASP A 1123 REMARK 465 CYS A 1124 REMARK 465 ASP A 1125 REMARK 465 GLY A 1126 REMARK 465 SER A 1127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 153 -128.19 56.91 REMARK 500 LYS A 243 -133.37 59.11 REMARK 500 SER A 253 45.82 -100.03 REMARK 500 PHE A 256 138.26 -35.51 REMARK 500 ASN A 475 15.11 59.46 REMARK 500 VAL A 477 143.26 -170.21 REMARK 500 THR A 521 -114.03 -130.27 REMARK 500 ASP A 548 104.71 -56.74 REMARK 500 TYR A 737 138.48 -39.93 REMARK 500 CYS A 760 -91.08 -113.33 REMARK 500 LYS A 765 12.36 -145.74 REMARK 500 SER A 821 -126.27 57.61 REMARK 500 ARG A 855 179.80 80.69 REMARK 500 THR A 878 17.98 -144.85 REMARK 500 LYS A 896 -133.38 64.29 REMARK 500 LEU A 982 44.68 -84.98 REMARK 500 ASP A 988 -21.27 114.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 7W82 A 107 1127 UNP Q19VG2 Q19VG2_MAIZE 107 1127 SEQADV 7W82 ALA A 104 UNP Q19VG2 EXPRESSION TAG SEQADV 7W82 MET A 105 UNP Q19VG2 EXPRESSION TAG SEQADV 7W82 GLY A 106 UNP Q19VG2 EXPRESSION TAG SEQADV 7W82 ALA A 841 UNP Q19VG2 GLU 841 ENGINEERED MUTATION SEQADV 7W82 ALA A 842 UNP Q19VG2 LYS 842 ENGINEERED MUTATION SEQADV 7W82 ALA A 962 UNP Q19VG2 GLU 962 ENGINEERED MUTATION SEQADV 7W82 ALA A 963 UNP Q19VG2 GLU 963 ENGINEERED MUTATION SEQADV 7W82 ALA A 966 UNP Q19VG2 GLU 966 ENGINEERED MUTATION SEQRES 1 A 1024 ALA MET GLY SER LEU ARG ALA ALA SER ALA SER LEU ILE SEQRES 2 A 1024 LEU GLY ASN ARG VAL ALA GLU ARG GLU LEU GLU VAL ALA SEQRES 3 A 1024 TYR SER CYS ASP GLY VAL ARG ALA GLU VAL ILE PRO ARG SEQRES 4 A 1024 MET ARG ARG VAL ASP LEU TYR LEU LYS HIS ASP SER GLN SEQRES 5 A 1024 SER TYR LYS LEU GLU VAL LEU PHE GLU ASP ILE ASN GLU SEQRES 6 A 1024 CYS PHE GLY CYS HIS LEU ASP GLY THR GLY ALA ILE LEU SEQRES 7 A 1024 LEU GLN LEU THR TYR ALA PRO ARG ILE HIS ILE ALA ILE SEQRES 8 A 1024 SER GLY SER THR VAL LYS SER ARG PHE THR ASP ASP ARG SEQRES 9 A 1024 PHE HIS ALA CYS LYS GLU ASP ALA LYS PHE ALA TRP VAL SEQRES 10 A 1024 ARG ALA LEU ASP PHE THR PRO ASN SER SER PHE GLY GLU SEQRES 11 A 1024 CYS SER THR LEU VAL LEU LYS LEU SER LYS GLY ALA SER SEQRES 12 A 1024 VAL SER TYR ILE LEU GLU SER LEU PRO PHE SER GLY GLU SEQRES 13 A 1024 LEU GLY GLU LEU ALA ILE ALA SER MET ASP VAL PHE GLY SEQRES 14 A 1024 SER SER SER ASN VAL VAL PRO LEU VAL ASP CYS PRO ASN SEQRES 15 A 1024 GLY PHE SER VAL PRO TYR GLU VAL LEU PHE ARG LEU ASN SEQRES 16 A 1024 SER LEU VAL HIS MET GLY LYS LEU VAL ALA ARG HIS VAL SEQRES 17 A 1024 ASN ALA ASP LEU PHE LYS VAL LEU GLU ASP LEU SER ILE SEQRES 18 A 1024 ASP THR LEU ARG ARG ILE PHE GLU LYS MET SER LYS LEU SEQRES 19 A 1024 LYS SER THR CYS TYR GLU PRO LEU GLN PHE ILE ARG HIS SEQRES 20 A 1024 GLU ALA HIS SER MET ASN MET ARG LYS LYS ALA LEU SER SEQRES 21 A 1024 ASN LYS ARG GLU SER GLY LYS LEU MET ARG CYS TYR ARG SEQRES 22 A 1024 ILE HIS ILE THR PRO SER LYS ILE TYR CYS LEU GLY PRO SEQRES 23 A 1024 GLU GLU GLU VAL SER ASN TYR VAL VAL LYS TYR HIS SER SEQRES 24 A 1024 GLU TYR ALA SER ASP PHE ALA ARG VAL THR PHE VAL ASP SEQRES 25 A 1024 GLU ASP TRP SER LYS LEU SER PRO ASN ALA LEU SER ALA SEQRES 26 A 1024 ARG THR GLU GLN GLY PHE PHE SER LYS PRO LEU LYS THR SEQRES 27 A 1024 GLY LEU TYR HIS ARG ILE LEU SER ILE LEU LYS GLU GLY SEQRES 28 A 1024 PHE CYS ILE GLY PRO LYS LYS TYR GLU PHE LEU ALA PHE SEQRES 29 A 1024 SER ALA SER GLN LEU ARG GLY ASN SER VAL TRP MET PHE SEQRES 30 A 1024 ALA SER ASN SER SER LEU THR ALA GLU ASN ILE ARG ARG SEQRES 31 A 1024 TRP MET GLY HIS PHE GLU ASP ILE ARG SER VAL SER LYS SEQRES 32 A 1024 CYS ALA ALA ARG MET GLY GLN LEU PHE SER SER SER ARG SEQRES 33 A 1024 GLN THR PHE GLU VAL SER SER TYR ASP VAL GLU VAL ILE SEQRES 34 A 1024 PRO ASP ILE GLU VAL THR THR ASP GLY THR LYS TYR ILE SEQRES 35 A 1024 PHE SER ASP GLY ILE GLY LYS ILE SER THR ARG PHE ALA SEQRES 36 A 1024 ARG GLN VAL ALA LYS LEU ILE GLY LEU ASP PRO ALA HIS SEQRES 37 A 1024 PRO PRO SER ALA PHE GLN ILE ARG TYR GLY GLY TYR LYS SEQRES 38 A 1024 GLY VAL ILE THR ILE ASP PRO THR SER PHE PHE ASN LEU SEQRES 39 A 1024 SER LEU ARG PRO SER MET LYS LYS PHE GLU SER LYS SER SEQRES 40 A 1024 THR MET LEU ASN ILE THR ASN TRP SER LYS SER GLN PRO SEQRES 41 A 1024 CYS TYR VAL ASN ARG GLU ILE ILE SER LEU LEU SER THR SEQRES 42 A 1024 LEU GLY ILE LYS ASP GLU VAL PHE GLU SER MET GLN GLN SEQRES 43 A 1024 ASP ASP MET HIS GLU SER ASP GLY MET LEU THR ASN LYS SEQRES 44 A 1024 GLU ALA ALA LEU SER VAL LEU GLY LYS ILE GLY GLY GLY SEQRES 45 A 1024 ASP THR LYS THR ALA ALA ASP MET LEU LEU GLN GLY TYR SEQRES 46 A 1024 GLU PRO SER SER GLU PRO TYR LEU LEU MET ILE LEU LYS SEQRES 47 A 1024 ALA HIS ARG ALA ASN ARG LEU THR ASP ILE ARG THR ARG SEQRES 48 A 1024 CYS LYS ILE HIS VAL GLN LYS GLY ARG VAL LEU ILE GLY SEQRES 49 A 1024 CYS LEU ASP GLU THR CYS LYS LEU GLU TYR GLY GLN VAL SEQRES 50 A 1024 TYR ILE ARG ILE THR LYS ASN HIS LYS GLU GLN LYS TYR SEQRES 51 A 1024 SER GLU GLN PRO PHE PHE CYS ASN ASP ASP GLY LYS THR SEQRES 52 A 1024 ALA VAL ILE VAL GLY LYS VAL ALA ILE THR LYS ASN PRO SEQRES 53 A 1024 CYS LEU HIS PRO GLY ASP VAL ARG VAL LEU GLU ALA VAL SEQRES 54 A 1024 TYR ASP PRO GLY LEU ASP ALA ARG GLY LEU ILE ASP CYS SEQRES 55 A 1024 VAL VAL PHE PRO GLN ARG GLY GLU ARG PRO HIS PRO ASN SEQRES 56 A 1024 GLU CYS SER GLY GLY ASP LEU ASP GLY ASP LEU PHE PHE SEQRES 57 A 1024 ILE THR TRP ASP ASP LYS LEU ILE PRO ALA ALA VAL ASP SEQRES 58 A 1024 ALA PRO MET ASP TYR THR ALA THR ARG PRO ARG ILE MET SEQRES 59 A 1024 ASP HIS ALA VAL THR LEU GLU GLU ILE GLN LYS HIS PHE SEQRES 60 A 1024 VAL SER TYR MET ILE ASN ASP THR LEU GLY ALA ILE SER SEQRES 61 A 1024 THR ALA HIS LEU ILE HIS ALA ASP ARG ASP PRO LEU LYS SEQRES 62 A 1024 ALA ARG SER PRO GLU CYS VAL GLN LEU ALA ALA LEU HIS SEQRES 63 A 1024 SER MET ALA VAL ASP PHE ALA LYS THR GLY ALA PRO ALA SEQRES 64 A 1024 GLU MET PRO LEU ALA LEU ARG PRO ARG GLU PHE PRO ASP SEQRES 65 A 1024 PHE MET GLU ARG TRP GLU ARG PRO MET TYR VAL SER ASN SEQRES 66 A 1024 GLY VAL LEU GLY LYS LEU TYR ARG ALA ALA LEU ARG HIS SEQRES 67 A 1024 ALA ALA ASP ALA ALA ALA LEU LEU PRO ALA GLY PRO PRO SEQRES 68 A 1024 SER CYS VAL TYR ASP PRO ASP LEU GLU VAL ALA GLY PHE SEQRES 69 A 1024 ASP GLU PHE LEU ASP ALA ALA GLU GLU ARG TYR GLU ALA SEQRES 70 A 1024 TYR ALA GLU ARG LEU GLY ALA LEU MET THR TYR TYR SER SEQRES 71 A 1024 ALA GLU ARG GLU ASP GLU ILE LEU THR GLY ASN ILE ARG SEQRES 72 A 1024 ASN LYS LEU VAL TYR LEU ARG ARG ASP ASN LYS ARG TYR SEQRES 73 A 1024 PHE GLU MET LYS ASP ARG ILE ILE ALA ALA VAL ASP ALA SEQRES 74 A 1024 LEU HIS ALA GLU VAL ARG GLY TRP LEU ARG ALA CYS LYS SEQRES 75 A 1024 GLU ASP ASP ALA SER ARG VAL ALA SER ALA TRP TYR HIS SEQRES 76 A 1024 VAL THR TYR HIS PRO ASP ARG ARG GLY GLU LYS ARG PHE SEQRES 77 A 1024 TRP SER PHE PRO TRP ILE ILE CYS ASP THR LEU LEU ALA SEQRES 78 A 1024 ILE LYS ALA ALA ARG ARG CYS ARG LYS ARG VAL GLU ASP SEQRES 79 A 1024 ALA ALA VAL PRO MET ASP CYS ASP GLY SER HELIX 1 AA1 SER A 229 CYS A 234 1 6 HELIX 2 AA2 SER A 246 GLU A 252 1 7 HELIX 3 AA3 PRO A 290 MET A 303 1 14 HELIX 4 AA4 ASN A 312 LEU A 322 1 11 HELIX 5 AA5 SER A 323 LYS A 336 1 14 HELIX 6 AA6 GLU A 343 SER A 354 1 12 HELIX 7 AA7 ASN A 395 HIS A 401 1 7 HELIX 8 AA8 SER A 402 SER A 406 5 5 HELIX 9 AA9 SER A 422 LEU A 426 5 5 HELIX 10 AB1 GLY A 442 GLY A 454 1 13 HELIX 11 AB2 SER A 468 GLY A 474 1 7 HELIX 12 AB3 THR A 487 GLY A 496 1 10 HELIX 13 AB4 SER A 503 GLN A 513 1 11 HELIX 14 AB5 LEU A 514 SER A 516 5 3 HELIX 15 AB6 SER A 525 TYR A 527 5 3 HELIX 16 AB7 SER A 554 ILE A 565 1 12 HELIX 17 AB8 ASN A 627 LEU A 637 1 11 HELIX 18 AB9 LYS A 640 MET A 658 1 19 HELIX 19 AC1 ASN A 661 LYS A 671 1 11 HELIX 20 AC2 GLY A 674 GLN A 686 1 13 HELIX 21 AC3 GLU A 693 CYS A 715 1 23 HELIX 22 AC4 ASN A 747 TYR A 753 1 7 HELIX 23 AC5 ASP A 794 ARG A 800 1 7 HELIX 24 AC6 PRO A 815 CYS A 820 1 6 HELIX 25 AC7 THR A 862 ASP A 877 1 16 HELIX 26 AC8 THR A 878 ASP A 893 1 16 HELIX 27 AC9 LEU A 895 ARG A 898 5 4 HELIX 28 AD1 SER A 899 GLY A 919 1 21 HELIX 29 AD2 GLY A 949 ALA A 962 1 14 HELIX 30 AD3 ASP A 979 GLU A 983 5 5 HELIX 31 AD4 PHE A 990 TYR A 1012 1 23 HELIX 32 AD5 ARG A 1016 GLY A 1023 1 8 HELIX 33 AD6 ASP A 1035 CYS A 1064 1 30 HELIX 34 AD7 LYS A 1065 HIS A 1082 1 18 HELIX 35 AD8 SER A 1093 ILE A 1097 5 5 HELIX 36 AD9 ILE A 1098 CYS A 1111 1 14 SHEET 1 AA110 VAL A 220 ARG A 221 0 SHEET 2 AA110 ARG A 189 ILE A 192 -1 N ILE A 192 O VAL A 220 SHEET 3 AA110 GLN A 155 LEU A 162 -1 N GLU A 160 O ARG A 189 SHEET 4 AA110 ARG A 145 HIS A 152 -1 N VAL A 146 O VAL A 161 SHEET 5 AA110 LEU A 126 ILE A 140 -1 N GLU A 138 O ASP A 147 SHEET 6 AA110 ARG A 109 ARG A 120 -1 N LEU A 117 O TYR A 130 SHEET 7 AA110 THR A 236 LEU A 241 -1 O VAL A 238 N ILE A 116 SHEET 8 AA110 THR A 177 LEU A 184 -1 N LEU A 182 O LEU A 237 SHEET 9 AA110 ILE A 166 LEU A 174 -1 N CYS A 172 O ALA A 179 SHEET 10 AA110 SER A 257 GLU A 259 1 O GLY A 258 N GLY A 171 SHEET 1 AA2 6 VAL A 220 ARG A 221 0 SHEET 2 AA2 6 ARG A 189 ILE A 192 -1 N ILE A 192 O VAL A 220 SHEET 3 AA2 6 GLN A 155 LEU A 162 -1 N GLU A 160 O ARG A 189 SHEET 4 AA2 6 ARG A 145 HIS A 152 -1 N VAL A 146 O VAL A 161 SHEET 5 AA2 6 LEU A 126 ILE A 140 -1 N GLU A 138 O ASP A 147 SHEET 6 AA2 6 ALA A 264 ALA A 266 1 O ILE A 265 N LEU A 126 SHEET 1 AA3 6 ILE A 384 GLU A 392 0 SHEET 2 AA3 6 MET A 372 ILE A 379 -1 N ARG A 376 O LEU A 387 SHEET 3 AA3 6 PHE A 408 PHE A 413 1 O ARG A 410 N TYR A 375 SHEET 4 AA3 6 SER A 476 ALA A 481 -1 O MET A 479 N ALA A 409 SHEET 5 AA3 6 LYS A 460 ALA A 466 -1 N GLU A 463 O PHE A 480 SHEET 6 AA3 6 CYS A 456 ILE A 457 -1 N ILE A 457 O LYS A 460 SHEET 1 AA4 7 ARG A 519 GLU A 523 0 SHEET 2 AA4 7 MET A 612 TRP A 618 -1 O ILE A 615 N ARG A 519 SHEET 3 AA4 7 ALA A 575 TYR A 580 -1 N GLN A 577 O THR A 616 SHEET 4 AA4 7 TYR A 583 ILE A 589 -1 O TYR A 583 N TYR A 580 SHEET 5 AA4 7 ILE A 550 ILE A 553 1 N GLY A 551 O VAL A 586 SHEET 6 AA4 7 LEU A 597 LEU A 599 -1 O SER A 598 N LYS A 552 SHEET 7 AA4 7 VAL A 529 VAL A 531 1 N GLU A 530 O LEU A 597 SHEET 1 AA5 2 GLU A 536 THR A 539 0 SHEET 2 AA5 2 THR A 542 ILE A 545 -1 O TYR A 544 N VAL A 537 SHEET 1 AA6 6 GLN A 622 TYR A 625 0 SHEET 2 AA6 6 HIS A 718 LEU A 729 -1 O VAL A 724 N GLN A 622 SHEET 3 AA6 6 CYS A 805 PHE A 808 1 O PHE A 808 N CYS A 728 SHEET 4 AA6 6 GLN A 739 THR A 745 -1 N TYR A 741 O VAL A 807 SHEET 5 AA6 6 THR A 766 ILE A 769 -1 O ILE A 769 N ILE A 742 SHEET 6 AA6 6 PHE A 759 ASP A 762 -1 N CYS A 760 O VAL A 768 SHEET 1 AA7 8 GLN A 622 TYR A 625 0 SHEET 2 AA7 8 HIS A 718 LEU A 729 -1 O VAL A 724 N GLN A 622 SHEET 3 AA7 8 LEU A 829 THR A 833 -1 O ILE A 832 N ARG A 723 SHEET 4 AA7 8 LYS A 772 LYS A 777 -1 N THR A 776 O PHE A 831 SHEET 5 AA7 8 ARG A 787 ALA A 791 -1 O ARG A 787 N ILE A 775 SHEET 6 AA7 8 GLN A 739 THR A 745 1 N VAL A 740 O GLU A 790 SHEET 7 AA7 8 THR A 766 ILE A 769 -1 O ILE A 769 N ILE A 742 SHEET 8 AA7 8 PHE A 759 ASP A 762 -1 N CYS A 760 O VAL A 768 SHEET 1 AA8 2 PHE A 933 PRO A 934 0 SHEET 2 AA8 2 MET A 944 TYR A 945 1 O TYR A 945 N PHE A 933 SSBOND 1 CYS A 728 CYS A 805 1555 1555 2.13 CISPEP 1 VAL A 278 PRO A 279 0 14.83 CISPEP 2 ASN A 778 PRO A 779 0 -0.23 CRYST1 149.036 149.036 345.473 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006710 0.003874 0.000000 0.00000 SCALE2 0.000000 0.007748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002895 0.00000