data_7W9W # _entry.id 7W9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7W9W pdb_00007w9w 10.2210/pdb7w9w/pdb WWPDB D_1300026267 ? ? EMDB EMD-32377 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine' _pdbx_database_related.db_id EMD-32377 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7W9W _pdbx_database_status.recvd_initial_deposition_date 2021-12-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kishi, K.E.' 1 0000-0002-5887-0055 'Kim, Y.' 2 0000-0003-3332-0652 'Fukuda, M.' 3 0000-0002-8824-846X 'Yamashita, K.' 4 0000-0002-5442-7582 'Deisseroth, K.' 5 0000-0001-9440-3967 'Kato, H.E.' 6 0000-0002-1941-5535 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 185 _citation.language ? _citation.page_first 672 _citation.page_last ? _citation.title 'Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2022.01.007 _citation.pdbx_database_id_PubMed 35114111 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kishi, K.E.' 1 ? primary 'Kim, Y.S.' 2 ? primary 'Fukuda, M.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kusakizako, T.' 5 ? primary 'Wang, P.Y.' 6 ? primary 'Ramakrishnan, C.' 7 ? primary 'Byrne, E.F.X.' 8 ? primary 'Thadhani, E.' 9 ? primary 'Paggi, J.M.' 10 ? primary 'Matsui, T.E.' 11 ? primary 'Yamashita, K.' 12 ? primary 'Nagata, T.' 13 ? primary 'Konno, M.' 14 ? primary 'Quirin, S.' 15 ? primary 'Lo, M.' 16 ? primary 'Benster, T.' 17 ? primary 'Uemura, T.' 18 ? primary 'Liu, K.' 19 ? primary 'Shibata, M.' 20 ? primary 'Nomura, N.' 21 ? primary 'Iwata, S.' 22 ? primary 'Nureki, O.' 23 ? primary 'Dror, R.O.' 24 ? primary 'Inoue, K.' 25 ? primary 'Deisseroth, K.' 26 ? primary 'Kato, H.E.' 27 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7W9W _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ChRmine 35772.965 1 ? ? ? ? 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn CHOLESTEROL 386.654 2 ? ? ? ? 4 non-polymer syn 'PALMITIC ACID' 256.424 5 ? ? ? ? 5 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPMAHAPGTDQMFYVGTMDGWYLDTKLNSVAIGAHWSCFIVLTITTFYLGYESWTSRGPSKRTSFYAGYQEEQNLALFVN FFAMLSYFGKIVADTLGHNFGDVGPFIIGFGNYRYADYMLTCPMLVYDLLYQLRAPYRVSCSAIIFAILMSGVLAEFYAE GDPRLRNGAYAWYGFGCFWFIFAYSIVMSIVAKQYSRLAQLAQDTGAEHSLHVLKFAVFTFSMLWILFPLVWAICPRGFG WIDDNWTEVAHCVCDIVAKSCYGFALARFRKTYDEELFRLLEQLGHDEDEFQKLELDMRLSSNGERLEVLFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GPMAHAPGTDQMFYVGTMDGWYLDTKLNSVAIGAHWSCFIVLTITTFYLGYESWTSRGPSKRTSFYAGYQEEQNLALFVN FFAMLSYFGKIVADTLGHNFGDVGPFIIGFGNYRYADYMLTCPMLVYDLLYQLRAPYRVSCSAIIFAILMSGVLAEFYAE GDPRLRNGAYAWYGFGCFWFIFAYSIVMSIVAKQYSRLAQLAQDTGAEHSLHVLKFAVFTFSMLWILFPLVWAICPRGFG WIDDNWTEVAHCVCDIVAKSCYGFALARFRKTYDEELFRLLEQLGHDEDEFQKLELDMRLSSNGERLEVLFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 MET n 1 4 ALA n 1 5 HIS n 1 6 ALA n 1 7 PRO n 1 8 GLY n 1 9 THR n 1 10 ASP n 1 11 GLN n 1 12 MET n 1 13 PHE n 1 14 TYR n 1 15 VAL n 1 16 GLY n 1 17 THR n 1 18 MET n 1 19 ASP n 1 20 GLY n 1 21 TRP n 1 22 TYR n 1 23 LEU n 1 24 ASP n 1 25 THR n 1 26 LYS n 1 27 LEU n 1 28 ASN n 1 29 SER n 1 30 VAL n 1 31 ALA n 1 32 ILE n 1 33 GLY n 1 34 ALA n 1 35 HIS n 1 36 TRP n 1 37 SER n 1 38 CYS n 1 39 PHE n 1 40 ILE n 1 41 VAL n 1 42 LEU n 1 43 THR n 1 44 ILE n 1 45 THR n 1 46 THR n 1 47 PHE n 1 48 TYR n 1 49 LEU n 1 50 GLY n 1 51 TYR n 1 52 GLU n 1 53 SER n 1 54 TRP n 1 55 THR n 1 56 SER n 1 57 ARG n 1 58 GLY n 1 59 PRO n 1 60 SER n 1 61 LYS n 1 62 ARG n 1 63 THR n 1 64 SER n 1 65 PHE n 1 66 TYR n 1 67 ALA n 1 68 GLY n 1 69 TYR n 1 70 GLN n 1 71 GLU n 1 72 GLU n 1 73 GLN n 1 74 ASN n 1 75 LEU n 1 76 ALA n 1 77 LEU n 1 78 PHE n 1 79 VAL n 1 80 ASN n 1 81 PHE n 1 82 PHE n 1 83 ALA n 1 84 MET n 1 85 LEU n 1 86 SER n 1 87 TYR n 1 88 PHE n 1 89 GLY n 1 90 LYS n 1 91 ILE n 1 92 VAL n 1 93 ALA n 1 94 ASP n 1 95 THR n 1 96 LEU n 1 97 GLY n 1 98 HIS n 1 99 ASN n 1 100 PHE n 1 101 GLY n 1 102 ASP n 1 103 VAL n 1 104 GLY n 1 105 PRO n 1 106 PHE n 1 107 ILE n 1 108 ILE n 1 109 GLY n 1 110 PHE n 1 111 GLY n 1 112 ASN n 1 113 TYR n 1 114 ARG n 1 115 TYR n 1 116 ALA n 1 117 ASP n 1 118 TYR n 1 119 MET n 1 120 LEU n 1 121 THR n 1 122 CYS n 1 123 PRO n 1 124 MET n 1 125 LEU n 1 126 VAL n 1 127 TYR n 1 128 ASP n 1 129 LEU n 1 130 LEU n 1 131 TYR n 1 132 GLN n 1 133 LEU n 1 134 ARG n 1 135 ALA n 1 136 PRO n 1 137 TYR n 1 138 ARG n 1 139 VAL n 1 140 SER n 1 141 CYS n 1 142 SER n 1 143 ALA n 1 144 ILE n 1 145 ILE n 1 146 PHE n 1 147 ALA n 1 148 ILE n 1 149 LEU n 1 150 MET n 1 151 SER n 1 152 GLY n 1 153 VAL n 1 154 LEU n 1 155 ALA n 1 156 GLU n 1 157 PHE n 1 158 TYR n 1 159 ALA n 1 160 GLU n 1 161 GLY n 1 162 ASP n 1 163 PRO n 1 164 ARG n 1 165 LEU n 1 166 ARG n 1 167 ASN n 1 168 GLY n 1 169 ALA n 1 170 TYR n 1 171 ALA n 1 172 TRP n 1 173 TYR n 1 174 GLY n 1 175 PHE n 1 176 GLY n 1 177 CYS n 1 178 PHE n 1 179 TRP n 1 180 PHE n 1 181 ILE n 1 182 PHE n 1 183 ALA n 1 184 TYR n 1 185 SER n 1 186 ILE n 1 187 VAL n 1 188 MET n 1 189 SER n 1 190 ILE n 1 191 VAL n 1 192 ALA n 1 193 LYS n 1 194 GLN n 1 195 TYR n 1 196 SER n 1 197 ARG n 1 198 LEU n 1 199 ALA n 1 200 GLN n 1 201 LEU n 1 202 ALA n 1 203 GLN n 1 204 ASP n 1 205 THR n 1 206 GLY n 1 207 ALA n 1 208 GLU n 1 209 HIS n 1 210 SER n 1 211 LEU n 1 212 HIS n 1 213 VAL n 1 214 LEU n 1 215 LYS n 1 216 PHE n 1 217 ALA n 1 218 VAL n 1 219 PHE n 1 220 THR n 1 221 PHE n 1 222 SER n 1 223 MET n 1 224 LEU n 1 225 TRP n 1 226 ILE n 1 227 LEU n 1 228 PHE n 1 229 PRO n 1 230 LEU n 1 231 VAL n 1 232 TRP n 1 233 ALA n 1 234 ILE n 1 235 CYS n 1 236 PRO n 1 237 ARG n 1 238 GLY n 1 239 PHE n 1 240 GLY n 1 241 TRP n 1 242 ILE n 1 243 ASP n 1 244 ASP n 1 245 ASN n 1 246 TRP n 1 247 THR n 1 248 GLU n 1 249 VAL n 1 250 ALA n 1 251 HIS n 1 252 CYS n 1 253 VAL n 1 254 CYS n 1 255 ASP n 1 256 ILE n 1 257 VAL n 1 258 ALA n 1 259 LYS n 1 260 SER n 1 261 CYS n 1 262 TYR n 1 263 GLY n 1 264 PHE n 1 265 ALA n 1 266 LEU n 1 267 ALA n 1 268 ARG n 1 269 PHE n 1 270 ARG n 1 271 LYS n 1 272 THR n 1 273 TYR n 1 274 ASP n 1 275 GLU n 1 276 GLU n 1 277 LEU n 1 278 PHE n 1 279 ARG n 1 280 LEU n 1 281 LEU n 1 282 GLU n 1 283 GLN n 1 284 LEU n 1 285 GLY n 1 286 HIS n 1 287 ASP n 1 288 GLU n 1 289 ASP n 1 290 GLU n 1 291 PHE n 1 292 GLN n 1 293 LYS n 1 294 LEU n 1 295 GLU n 1 296 LEU n 1 297 ASP n 1 298 MET n 1 299 ARG n 1 300 LEU n 1 301 SER n 1 302 SER n 1 303 ASN n 1 304 GLY n 1 305 GLU n 1 306 ARG n 1 307 LEU n 1 308 GLU n 1 309 VAL n 1 310 LEU n 1 311 PHE n 1 312 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 312 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodomonas lens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 354590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7W9W _struct_ref.pdbx_db_accession 7W9W _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7W9W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 312 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7W9W _struct_ref_seq.db_align_beg -1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 310 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 310 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CLR non-polymer . CHOLESTEROL ? 'C27 H46 O' 386.654 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PLM non-polymer . 'PALMITIC ACID' ? 'C16 H32 O2' 256.424 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7W9W _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 58.331 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.853 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7W9W _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 88.659 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work 174804 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.000 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2684 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work 0.268 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.065 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 2.420 _refine.overall_SU_ML 0.062 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall 0.8813 _refine.pdbx_average_fsc_work 0.8813 _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 0.013 2430 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.002 0.015 2320 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.647 1.628 3292 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 1.280 1.573 5321 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 5.563 5.000 273 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 30.722 20.672 119 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 13.571 15.000 339 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 7.182 15.000 12 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.084 0.200 297 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.010 0.020 2679 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.004 0.020 629 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? 0.171 0.200 920 ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.116 0.200 3798 ? r_symmetry_nbd_other ? ? 'ELECTRON MICROSCOPY' ? 0.166 0.200 2332 ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? 0.069 0.200 2184 ? r_symmetry_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? 0.116 0.200 162 ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.194 0.200 10 ? r_symmetry_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.139 0.200 160 ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? 0.105 0.200 8 ? r_symmetry_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 4.314 5.194 1086 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 4.288 5.189 1085 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 6.116 7.802 1358 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 6.114 7.807 1359 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 5.756 6.636 1344 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 5.754 6.638 1345 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? 9.267 9.547 1933 ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 9.265 9.549 1934 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 15.759 104.428 10643 ? r_lrange_it ? ? 'ELECTRON MICROSCOPY' ? 15.762 104.439 10607 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON MICROSCOPY' 2.000 2.052 13033 . 0 13033 100.0000 . 0.805 . . . 0.805 . . . . . 0.805 . 20 . 0.601 . 'ELECTRON MICROSCOPY' 2.052 2.108 12729 . 0 12729 100.0000 . 0.538 . . . 0.538 . . . . . 0.538 . 20 . 0.716 . 'ELECTRON MICROSCOPY' 2.108 2.169 12111 . 0 12111 100.0000 . 0.453 . . . 0.453 . . . . . 0.453 . 20 . 0.798 . 'ELECTRON MICROSCOPY' 2.169 2.236 11940 . 0 11940 100.0000 . 0.390 . . . 0.390 . . . . . 0.390 . 20 . 0.851 . 'ELECTRON MICROSCOPY' 2.236 2.309 11489 . 0 11489 100.0000 . 0.339 . . . 0.339 . . . . . 0.339 . 20 . 0.878 . 'ELECTRON MICROSCOPY' 2.309 2.390 11129 . 0 11129 100.0000 . 0.319 . . . 0.319 . . . . . 0.319 . 20 . 0.892 . 'ELECTRON MICROSCOPY' 2.390 2.480 10835 . 0 10835 100.0000 . 0.261 . . . 0.261 . . . . . 0.261 . 20 . 0.924 . 'ELECTRON MICROSCOPY' 2.480 2.582 10262 . 0 10262 100.0000 . 0.231 . . . 0.231 . . . . . 0.231 . 20 . 0.938 . 'ELECTRON MICROSCOPY' 2.582 2.696 9991 . 0 9991 100.0000 . 0.204 . . . 0.204 . . . . . 0.204 . 20 . 0.951 . 'ELECTRON MICROSCOPY' 2.696 2.828 9397 . 0 9397 100.0000 . 0.188 . . . 0.188 . . . . . 0.188 . 20 . 0.960 . 'ELECTRON MICROSCOPY' 2.828 2.981 9112 . 0 9112 100.0000 . 0.181 . . . 0.181 . . . . . 0.181 . 20 . 0.964 . 'ELECTRON MICROSCOPY' 2.981 3.161 8508 . 0 8508 100.0000 . 0.184 . . . 0.184 . . . . . 0.184 . 20 . 0.966 . 'ELECTRON MICROSCOPY' 3.161 3.379 8071 . 0 8071 100.0000 . 0.181 . . . 0.181 . . . . . 0.181 . 20 . 0.968 . 'ELECTRON MICROSCOPY' 3.379 3.649 7384 . 0 7384 100.0000 . 0.181 . . . 0.181 . . . . . 0.181 . 20 . 0.970 . 'ELECTRON MICROSCOPY' 3.649 3.997 6926 . 0 6926 100.0000 . 0.193 . . . 0.193 . . . . . 0.193 . 20 . 0.969 . 'ELECTRON MICROSCOPY' 3.997 4.468 6214 . 0 6214 100.0000 . 0.210 . . . 0.210 . . . . . 0.210 . 20 . 0.960 . 'ELECTRON MICROSCOPY' 4.468 5.157 5475 . 0 5475 100.0000 . 0.217 . . . 0.217 . . . . . 0.217 . 20 . 0.954 . 'ELECTRON MICROSCOPY' 5.157 6.310 4627 . 0 4627 100.0000 . 0.290 . . . 0.290 . . . . . 0.290 . 20 . 0.910 . 'ELECTRON MICROSCOPY' 6.310 8.901 3598 . 0 3598 100.0000 . 0.361 . . . 0.361 . . . . . 0.361 . 20 . 0.873 . 'ELECTRON MICROSCOPY' 8.901 88.659 1973 . 0 1973 100.0000 . 0.631 . . . 0.631 . . . . . 0.631 . 20 . 0.956 . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.vector[2] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 1 0 0 0 0 1 0 0 0 0 1 0 ? 2 generate -0.5 -0.866025404 0 180.758982 0.866025404 -0.5 0 48.4342232 0 0 1 0 ? 3 generate -0.5 0.866025404 0 48.4342232 -0.866025404 -0.5 0 180.758982 0 0 1 0 ? # _struct.entry_id 7W9W _struct.title '2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7W9W _struct_keywords.text 'channelrhodopsin, ion channel, photoreceptor, cryo-EM, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 17 ? TYR A 22 ? THR A 15 TYR A 20 1 ? 6 HELX_P HELX_P2 AA2 ASN A 28 ? SER A 56 ? ASN A 26 SER A 54 1 ? 29 HELX_P HELX_P3 AA3 PHE A 65 ? GLN A 70 ? PHE A 63 GLN A 68 1 ? 6 HELX_P HELX_P4 AA4 GLU A 71 ? GLN A 73 ? GLU A 69 GLN A 71 5 ? 3 HELX_P HELX_P5 AA5 ASN A 74 ? GLY A 97 ? ASN A 72 GLY A 95 1 ? 24 HELX_P HELX_P6 AA6 ASP A 117 ? LEU A 133 ? ASP A 115 LEU A 131 1 ? 17 HELX_P HELX_P7 AA7 TYR A 137 ? GLY A 161 ? TYR A 135 GLY A 159 1 ? 25 HELX_P HELX_P8 AA8 ASP A 162 ? LEU A 165 ? ASP A 160 LEU A 163 5 ? 4 HELX_P HELX_P9 AA9 ARG A 166 ? GLN A 203 ? ARG A 164 GLN A 201 1 ? 38 HELX_P HELX_P10 AB1 GLY A 206 ? TRP A 225 ? GLY A 204 TRP A 223 1 ? 20 HELX_P HELX_P11 AB2 ILE A 226 ? CYS A 235 ? ILE A 224 CYS A 233 1 ? 10 HELX_P HELX_P12 AB3 ASP A 243 ? LYS A 259 ? ASP A 241 LYS A 257 1 ? 17 HELX_P HELX_P13 AB4 LYS A 259 ? ARG A 279 ? LYS A 257 ARG A 277 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 259 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.334 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7W9W _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 PRO 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 ALA 4 2 ? ? ? A . n A 1 5 HIS 5 3 ? ? ? A . n A 1 6 ALA 6 4 ? ? ? A . n A 1 7 PRO 7 5 ? ? ? A . n A 1 8 GLY 8 6 ? ? ? A . n A 1 9 THR 9 7 ? ? ? A . n A 1 10 ASP 10 8 ? ? ? A . n A 1 11 GLN 11 9 ? ? ? A . n A 1 12 MET 12 10 10 MET MET A . n A 1 13 PHE 13 11 11 PHE PHE A . n A 1 14 TYR 14 12 12 TYR TYR A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 GLY 16 14 14 GLY GLY A . n A 1 17 THR 17 15 15 THR THR A . n A 1 18 MET 18 16 16 MET MET A . n A 1 19 ASP 19 17 17 ASP ASP A . n A 1 20 GLY 20 18 18 GLY GLY A . n A 1 21 TRP 21 19 19 TRP TRP A . n A 1 22 TYR 22 20 20 TYR TYR A . n A 1 23 LEU 23 21 21 LEU LEU A . n A 1 24 ASP 24 22 22 ASP ASP A . n A 1 25 THR 25 23 23 THR THR A . n A 1 26 LYS 26 24 24 LYS LYS A . n A 1 27 LEU 27 25 25 LEU LEU A . n A 1 28 ASN 28 26 26 ASN ASN A . n A 1 29 SER 29 27 27 SER SER A . n A 1 30 VAL 30 28 28 VAL VAL A . n A 1 31 ALA 31 29 29 ALA ALA A . n A 1 32 ILE 32 30 30 ILE ILE A . n A 1 33 GLY 33 31 31 GLY GLY A . n A 1 34 ALA 34 32 32 ALA ALA A . n A 1 35 HIS 35 33 33 HIS HIS A . n A 1 36 TRP 36 34 34 TRP TRP A . n A 1 37 SER 37 35 35 SER SER A . n A 1 38 CYS 38 36 36 CYS CYS A . n A 1 39 PHE 39 37 37 PHE PHE A . n A 1 40 ILE 40 38 38 ILE ILE A . n A 1 41 VAL 41 39 39 VAL VAL A . n A 1 42 LEU 42 40 40 LEU LEU A . n A 1 43 THR 43 41 41 THR THR A . n A 1 44 ILE 44 42 42 ILE ILE A . n A 1 45 THR 45 43 43 THR THR A . n A 1 46 THR 46 44 44 THR THR A . n A 1 47 PHE 47 45 45 PHE PHE A . n A 1 48 TYR 48 46 46 TYR TYR A . n A 1 49 LEU 49 47 47 LEU LEU A . n A 1 50 GLY 50 48 48 GLY GLY A . n A 1 51 TYR 51 49 49 TYR TYR A . n A 1 52 GLU 52 50 50 GLU GLU A . n A 1 53 SER 53 51 51 SER SER A . n A 1 54 TRP 54 52 52 TRP TRP A . n A 1 55 THR 55 53 53 THR THR A . n A 1 56 SER 56 54 54 SER SER A . n A 1 57 ARG 57 55 55 ARG ARG A . n A 1 58 GLY 58 56 56 GLY GLY A . n A 1 59 PRO 59 57 57 PRO PRO A . n A 1 60 SER 60 58 58 SER SER A . n A 1 61 LYS 61 59 59 LYS LYS A . n A 1 62 ARG 62 60 60 ARG ARG A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 SER 64 62 62 SER SER A . n A 1 65 PHE 65 63 63 PHE PHE A . n A 1 66 TYR 66 64 64 TYR TYR A . n A 1 67 ALA 67 65 65 ALA ALA A . n A 1 68 GLY 68 66 66 GLY GLY A . n A 1 69 TYR 69 67 67 TYR TYR A . n A 1 70 GLN 70 68 68 GLN GLN A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 GLU 72 70 70 GLU GLU A . n A 1 73 GLN 73 71 71 GLN GLN A . n A 1 74 ASN 74 72 72 ASN ASN A . n A 1 75 LEU 75 73 73 LEU LEU A . n A 1 76 ALA 76 74 74 ALA ALA A . n A 1 77 LEU 77 75 75 LEU LEU A . n A 1 78 PHE 78 76 76 PHE PHE A . n A 1 79 VAL 79 77 77 VAL VAL A . n A 1 80 ASN 80 78 78 ASN ASN A . n A 1 81 PHE 81 79 79 PHE PHE A . n A 1 82 PHE 82 80 80 PHE PHE A . n A 1 83 ALA 83 81 81 ALA ALA A . n A 1 84 MET 84 82 82 MET MET A . n A 1 85 LEU 85 83 83 LEU LEU A . n A 1 86 SER 86 84 84 SER SER A . n A 1 87 TYR 87 85 85 TYR TYR A . n A 1 88 PHE 88 86 86 PHE PHE A . n A 1 89 GLY 89 87 87 GLY GLY A . n A 1 90 LYS 90 88 88 LYS LYS A . n A 1 91 ILE 91 89 89 ILE ILE A . n A 1 92 VAL 92 90 90 VAL VAL A . n A 1 93 ALA 93 91 91 ALA ALA A . n A 1 94 ASP 94 92 92 ASP ASP A . n A 1 95 THR 95 93 93 THR THR A . n A 1 96 LEU 96 94 94 LEU LEU A . n A 1 97 GLY 97 95 95 GLY GLY A . n A 1 98 HIS 98 96 96 HIS HIS A . n A 1 99 ASN 99 97 97 ASN ASN A . n A 1 100 PHE 100 98 98 PHE PHE A . n A 1 101 GLY 101 99 99 GLY GLY A . n A 1 102 ASP 102 100 100 ASP ASP A . n A 1 103 VAL 103 101 101 VAL VAL A . n A 1 104 GLY 104 102 102 GLY GLY A . n A 1 105 PRO 105 103 103 PRO PRO A . n A 1 106 PHE 106 104 104 PHE PHE A . n A 1 107 ILE 107 105 105 ILE ILE A . n A 1 108 ILE 108 106 106 ILE ILE A . n A 1 109 GLY 109 107 107 GLY GLY A . n A 1 110 PHE 110 108 108 PHE PHE A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 ASN 112 110 110 ASN ASN A . n A 1 113 TYR 113 111 111 TYR TYR A . n A 1 114 ARG 114 112 112 ARG ARG A . n A 1 115 TYR 115 113 113 TYR TYR A . n A 1 116 ALA 116 114 114 ALA ALA A . n A 1 117 ASP 117 115 115 ASP ASP A . n A 1 118 TYR 118 116 116 TYR TYR A . n A 1 119 MET 119 117 117 MET MET A . n A 1 120 LEU 120 118 118 LEU LEU A . n A 1 121 THR 121 119 119 THR THR A . n A 1 122 CYS 122 120 120 CYS CYS A . n A 1 123 PRO 123 121 121 PRO PRO A . n A 1 124 MET 124 122 122 MET MET A . n A 1 125 LEU 125 123 123 LEU LEU A . n A 1 126 VAL 126 124 124 VAL VAL A . n A 1 127 TYR 127 125 125 TYR TYR A . n A 1 128 ASP 128 126 126 ASP ASP A . n A 1 129 LEU 129 127 127 LEU LEU A . n A 1 130 LEU 130 128 128 LEU LEU A . n A 1 131 TYR 131 129 129 TYR TYR A . n A 1 132 GLN 132 130 130 GLN GLN A . n A 1 133 LEU 133 131 131 LEU LEU A . n A 1 134 ARG 134 132 132 ARG ARG A . n A 1 135 ALA 135 133 133 ALA ALA A . n A 1 136 PRO 136 134 134 PRO PRO A . n A 1 137 TYR 137 135 135 TYR TYR A . n A 1 138 ARG 138 136 136 ARG ARG A . n A 1 139 VAL 139 137 137 VAL VAL A . n A 1 140 SER 140 138 138 SER SER A . n A 1 141 CYS 141 139 139 CYS CYS A . n A 1 142 SER 142 140 140 SER SER A . n A 1 143 ALA 143 141 141 ALA ALA A . n A 1 144 ILE 144 142 142 ILE ILE A . n A 1 145 ILE 145 143 143 ILE ILE A . n A 1 146 PHE 146 144 144 PHE PHE A . n A 1 147 ALA 147 145 145 ALA ALA A . n A 1 148 ILE 148 146 146 ILE ILE A . n A 1 149 LEU 149 147 147 LEU LEU A . n A 1 150 MET 150 148 148 MET MET A . n A 1 151 SER 151 149 149 SER SER A . n A 1 152 GLY 152 150 150 GLY GLY A . n A 1 153 VAL 153 151 151 VAL VAL A . n A 1 154 LEU 154 152 152 LEU LEU A . n A 1 155 ALA 155 153 153 ALA ALA A . n A 1 156 GLU 156 154 154 GLU GLU A . n A 1 157 PHE 157 155 155 PHE PHE A . n A 1 158 TYR 158 156 156 TYR TYR A . n A 1 159 ALA 159 157 157 ALA ALA A . n A 1 160 GLU 160 158 158 GLU GLU A . n A 1 161 GLY 161 159 159 GLY GLY A . n A 1 162 ASP 162 160 160 ASP ASP A . n A 1 163 PRO 163 161 161 PRO PRO A . n A 1 164 ARG 164 162 162 ARG ARG A . n A 1 165 LEU 165 163 163 LEU LEU A . n A 1 166 ARG 166 164 164 ARG ARG A . n A 1 167 ASN 167 165 165 ASN ASN A . n A 1 168 GLY 168 166 166 GLY GLY A . n A 1 169 ALA 169 167 167 ALA ALA A . n A 1 170 TYR 170 168 168 TYR TYR A . n A 1 171 ALA 171 169 169 ALA ALA A . n A 1 172 TRP 172 170 170 TRP TRP A . n A 1 173 TYR 173 171 171 TYR TYR A . n A 1 174 GLY 174 172 172 GLY GLY A . n A 1 175 PHE 175 173 173 PHE PHE A . n A 1 176 GLY 176 174 174 GLY GLY A . n A 1 177 CYS 177 175 175 CYS CYS A . n A 1 178 PHE 178 176 176 PHE PHE A . n A 1 179 TRP 179 177 177 TRP TRP A . n A 1 180 PHE 180 178 178 PHE PHE A . n A 1 181 ILE 181 179 179 ILE ILE A . n A 1 182 PHE 182 180 180 PHE PHE A . n A 1 183 ALA 183 181 181 ALA ALA A . n A 1 184 TYR 184 182 182 TYR TYR A . n A 1 185 SER 185 183 183 SER SER A . n A 1 186 ILE 186 184 184 ILE ILE A . n A 1 187 VAL 187 185 185 VAL VAL A . n A 1 188 MET 188 186 186 MET MET A . n A 1 189 SER 189 187 187 SER SER A . n A 1 190 ILE 190 188 188 ILE ILE A . n A 1 191 VAL 191 189 189 VAL VAL A . n A 1 192 ALA 192 190 190 ALA ALA A . n A 1 193 LYS 193 191 191 LYS LYS A . n A 1 194 GLN 194 192 192 GLN GLN A . n A 1 195 TYR 195 193 193 TYR TYR A . n A 1 196 SER 196 194 194 SER SER A . n A 1 197 ARG 197 195 195 ARG ARG A . n A 1 198 LEU 198 196 196 LEU LEU A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 GLN 200 198 198 GLN GLN A . n A 1 201 LEU 201 199 199 LEU LEU A . n A 1 202 ALA 202 200 200 ALA ALA A . n A 1 203 GLN 203 201 201 GLN GLN A . n A 1 204 ASP 204 202 202 ASP ASP A . n A 1 205 THR 205 203 203 THR THR A . n A 1 206 GLY 206 204 204 GLY GLY A . n A 1 207 ALA 207 205 205 ALA ALA A . n A 1 208 GLU 208 206 206 GLU GLU A . n A 1 209 HIS 209 207 207 HIS HIS A . n A 1 210 SER 210 208 208 SER SER A . n A 1 211 LEU 211 209 209 LEU LEU A . n A 1 212 HIS 212 210 210 HIS HIS A . n A 1 213 VAL 213 211 211 VAL VAL A . n A 1 214 LEU 214 212 212 LEU LEU A . n A 1 215 LYS 215 213 213 LYS LYS A . n A 1 216 PHE 216 214 214 PHE PHE A . n A 1 217 ALA 217 215 215 ALA ALA A . n A 1 218 VAL 218 216 216 VAL VAL A . n A 1 219 PHE 219 217 217 PHE PHE A . n A 1 220 THR 220 218 218 THR THR A . n A 1 221 PHE 221 219 219 PHE PHE A . n A 1 222 SER 222 220 220 SER SER A . n A 1 223 MET 223 221 221 MET MET A . n A 1 224 LEU 224 222 222 LEU LEU A . n A 1 225 TRP 225 223 223 TRP TRP A . n A 1 226 ILE 226 224 224 ILE ILE A . n A 1 227 LEU 227 225 225 LEU LEU A . n A 1 228 PHE 228 226 226 PHE PHE A . n A 1 229 PRO 229 227 227 PRO PRO A . n A 1 230 LEU 230 228 228 LEU LEU A . n A 1 231 VAL 231 229 229 VAL VAL A . n A 1 232 TRP 232 230 230 TRP TRP A . n A 1 233 ALA 233 231 231 ALA ALA A . n A 1 234 ILE 234 232 232 ILE ILE A . n A 1 235 CYS 235 233 233 CYS CYS A . n A 1 236 PRO 236 234 234 PRO PRO A . n A 1 237 ARG 237 235 235 ARG ARG A . n A 1 238 GLY 238 236 236 GLY GLY A . n A 1 239 PHE 239 237 237 PHE PHE A . n A 1 240 GLY 240 238 238 GLY GLY A . n A 1 241 TRP 241 239 239 TRP TRP A . n A 1 242 ILE 242 240 240 ILE ILE A . n A 1 243 ASP 243 241 241 ASP ASP A . n A 1 244 ASP 244 242 242 ASP ASP A . n A 1 245 ASN 245 243 243 ASN ASN A . n A 1 246 TRP 246 244 244 TRP TRP A . n A 1 247 THR 247 245 245 THR THR A . n A 1 248 GLU 248 246 246 GLU GLU A . n A 1 249 VAL 249 247 247 VAL VAL A . n A 1 250 ALA 250 248 248 ALA ALA A . n A 1 251 HIS 251 249 249 HIS HIS A . n A 1 252 CYS 252 250 250 CYS CYS A . n A 1 253 VAL 253 251 251 VAL VAL A . n A 1 254 CYS 254 252 252 CYS CYS A . n A 1 255 ASP 255 253 253 ASP ASP A . n A 1 256 ILE 256 254 254 ILE ILE A . n A 1 257 VAL 257 255 255 VAL VAL A . n A 1 258 ALA 258 256 256 ALA ALA A . n A 1 259 LYS 259 257 257 LYS LYS A . n A 1 260 SER 260 258 258 SER SER A . n A 1 261 CYS 261 259 259 CYS CYS A . n A 1 262 TYR 262 260 260 TYR TYR A . n A 1 263 GLY 263 261 261 GLY GLY A . n A 1 264 PHE 264 262 262 PHE PHE A . n A 1 265 ALA 265 263 263 ALA ALA A . n A 1 266 LEU 266 264 264 LEU LEU A . n A 1 267 ALA 267 265 265 ALA ALA A . n A 1 268 ARG 268 266 266 ARG ARG A . n A 1 269 PHE 269 267 267 PHE PHE A . n A 1 270 ARG 270 268 268 ARG ARG A . n A 1 271 LYS 271 269 269 LYS LYS A . n A 1 272 THR 272 270 270 THR THR A . n A 1 273 TYR 273 271 271 TYR TYR A . n A 1 274 ASP 274 272 272 ASP ASP A . n A 1 275 GLU 275 273 273 GLU GLU A . n A 1 276 GLU 276 274 274 GLU GLU A . n A 1 277 LEU 277 275 275 LEU LEU A . n A 1 278 PHE 278 276 276 PHE PHE A . n A 1 279 ARG 279 277 277 ARG ARG A . n A 1 280 LEU 280 278 278 LEU LEU A . n A 1 281 LEU 281 279 279 LEU LEU A . n A 1 282 GLU 282 280 ? ? ? A . n A 1 283 GLN 283 281 ? ? ? A . n A 1 284 LEU 284 282 ? ? ? A . n A 1 285 GLY 285 283 ? ? ? A . n A 1 286 HIS 286 284 ? ? ? A . n A 1 287 ASP 287 285 ? ? ? A . n A 1 288 GLU 288 286 ? ? ? A . n A 1 289 ASP 289 287 ? ? ? A . n A 1 290 GLU 290 288 ? ? ? A . n A 1 291 PHE 291 289 ? ? ? A . n A 1 292 GLN 292 290 ? ? ? A . n A 1 293 LYS 293 291 ? ? ? A . n A 1 294 LEU 294 292 ? ? ? A . n A 1 295 GLU 295 293 ? ? ? A . n A 1 296 LEU 296 294 ? ? ? A . n A 1 297 ASP 297 295 ? ? ? A . n A 1 298 MET 298 296 ? ? ? A . n A 1 299 ARG 299 297 ? ? ? A . n A 1 300 LEU 300 298 ? ? ? A . n A 1 301 SER 301 299 ? ? ? A . n A 1 302 SER 302 300 ? ? ? A . n A 1 303 ASN 303 301 ? ? ? A . n A 1 304 GLY 304 302 ? ? ? A . n A 1 305 GLU 305 303 ? ? ? A . n A 1 306 ARG 306 304 ? ? ? A . n A 1 307 LEU 307 305 ? ? ? A . n A 1 308 GLU 308 306 ? ? ? A . n A 1 309 VAL 309 307 ? ? ? A . n A 1 310 LEU 310 308 ? ? ? A . n A 1 311 PHE 311 309 ? ? ? A . n A 1 312 GLN 312 310 ? ? ? A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 hekato@bio.c.u-tokyo.ac.jp Kato Hideaki E 'principal investigator/group leader' 0000-0002-1941-5535 3 kyamashita@mrc-lmb.cam.ac.uk Yamashita Keitaro ? 'principal investigator/group leader' 0000-0002-5442-7582 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 401 300 RET RET A . C 3 CLR 1 402 401 CLR CLR A . D 3 CLR 1 403 402 CLR CLR A . E 4 PLM 1 404 501 PLM PLM A . F 4 PLM 1 405 502 PLM PLM A . G 4 PLM 1 406 503 PLM PLM A . H 4 PLM 1 407 504 PLM PLM A . I 4 PLM 1 408 505 PLM PLM A . J 5 HOH 1 501 916 HOH HOH A . J 5 HOH 2 502 906 HOH HOH A . J 5 HOH 3 503 917 HOH HOH A . J 5 HOH 4 504 947 HOH HOH A . J 5 HOH 5 505 912 HOH HOH A . J 5 HOH 6 506 942 HOH HOH A . J 5 HOH 7 507 925 HOH HOH A . J 5 HOH 8 508 930 HOH HOH A . J 5 HOH 9 509 909 HOH HOH A . J 5 HOH 10 510 907 HOH HOH A . J 5 HOH 11 511 948 HOH HOH A . J 5 HOH 12 512 901 HOH HOH A . J 5 HOH 13 513 937 HOH HOH A . J 5 HOH 14 514 940 HOH HOH A . J 5 HOH 15 515 911 HOH HOH A . J 5 HOH 16 516 915 HOH HOH A . J 5 HOH 17 517 919 HOH HOH A . J 5 HOH 18 518 931 HOH HOH A . J 5 HOH 19 519 920 HOH HOH A . J 5 HOH 20 520 939 HOH HOH A . J 5 HOH 21 521 941 HOH HOH A . J 5 HOH 22 522 902 HOH HOH A . J 5 HOH 23 523 932 HOH HOH A . J 5 HOH 24 524 938 HOH HOH A . J 5 HOH 25 525 936 HOH HOH A . J 5 HOH 26 526 945 HOH HOH A . J 5 HOH 27 527 943 HOH HOH A . J 5 HOH 28 528 910 HOH HOH A . J 5 HOH 29 529 922 HOH HOH A . J 5 HOH 30 530 921 HOH HOH A . J 5 HOH 31 531 914 HOH HOH A . J 5 HOH 32 532 934 HOH HOH A . J 5 HOH 33 533 924 HOH HOH A . J 5 HOH 34 534 944 HOH HOH A . J 5 HOH 35 535 928 HOH HOH A . J 5 HOH 36 536 927 HOH HOH A . J 5 HOH 37 537 904 HOH HOH A . J 5 HOH 38 538 933 HOH HOH A . J 5 HOH 39 539 913 HOH HOH A . J 5 HOH 40 540 946 HOH HOH A . J 5 HOH 41 541 905 HOH HOH A . J 5 HOH 42 542 908 HOH HOH A . J 5 HOH 43 543 903 HOH HOH A . J 5 HOH 44 544 918 HOH HOH A . J 5 HOH 45 545 929 HOH HOH A . J 5 HOH 46 546 926 HOH HOH A . J 5 HOH 47 547 923 HOH HOH A . J 5 HOH 48 548 935 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? trimeric 3 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-3)' A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 P A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.22741621 -0.97379765 0.00000000 91.77002 0.97379765 -0.22741621 0.00000000 -57.02185 0.00000000 0.00000000 1.00000000 -48.15953 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000000 180.75898 0.86602540 -0.50000000 0.00000000 48.43423 0.00000000 0.00000000 1.00000000 0.00000 3 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000000 48.43422 -0.86602540 -0.50000000 0.00000000 180.75898 0.00000000 0.00000000 1.00000000 0.00000 # _pdbx_point_symmetry.entry_id 7W9W _pdbx_point_symmetry.Schoenflies_symbol C _pdbx_point_symmetry.circular_symmetry 3 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-02 2 'Structure model' 1 1 2022-02-16 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author 'Garib N. Murshudov' _software.contact_author_email garib@mrc-lmb.cam.ac.uk _software.date 2021-12-03 _software.description '(un)restrained refinement or idealisation of macromolecular structures' _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0274 _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7W9W _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7W9W _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7W9W _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 185895 _em_3d_reconstruction.resolution 2.02 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name ChRmine _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7W9W _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 1600 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7W9W _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7W9W _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7W9W _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A TYR 116 ? ? CG A TYR 116 ? ? CD2 A TYR 116 ? ? 117.39 121.00 -3.61 0.60 N 2 1 CB A TYR 116 ? ? CG A TYR 116 ? ? CD1 A TYR 116 ? ? 124.73 121.00 3.73 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 113 ? ? 79.00 -9.25 2 1 GLN A 201 ? ? 55.27 -123.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A PLM 405 ? C1 ? F PLM 1 C1 2 1 N 1 A PLM 405 ? O1 ? F PLM 1 O1 3 1 N 1 A PLM 405 ? O2 ? F PLM 1 O2 4 1 N 1 A PLM 405 ? C2 ? F PLM 1 C2 5 1 N 1 A PLM 405 ? C3 ? F PLM 1 C3 6 1 N 1 A PLM 405 ? C4 ? F PLM 1 C4 7 1 N 1 A PLM 407 ? C1 ? H PLM 1 C1 8 1 N 1 A PLM 407 ? O1 ? H PLM 1 O1 9 1 N 1 A PLM 407 ? O2 ? H PLM 1 O2 10 1 N 1 A PLM 407 ? C2 ? H PLM 1 C2 11 1 N 1 A PLM 407 ? C3 ? H PLM 1 C3 12 1 N 1 A PLM 407 ? C4 ? H PLM 1 C4 13 1 N 1 A PLM 408 ? C1 ? I PLM 1 C1 14 1 N 1 A PLM 408 ? O1 ? I PLM 1 O1 15 1 N 1 A PLM 408 ? O2 ? I PLM 1 O2 16 1 N 1 A PLM 408 ? C2 ? I PLM 1 C2 17 1 N 1 A PLM 408 ? C3 ? I PLM 1 C3 18 1 N 1 A PLM 408 ? C4 ? I PLM 1 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A PRO 0 ? A PRO 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A ALA 2 ? A ALA 4 5 1 Y 1 A HIS 3 ? A HIS 5 6 1 Y 1 A ALA 4 ? A ALA 6 7 1 Y 1 A PRO 5 ? A PRO 7 8 1 Y 1 A GLY 6 ? A GLY 8 9 1 Y 1 A THR 7 ? A THR 9 10 1 Y 1 A ASP 8 ? A ASP 10 11 1 Y 1 A GLN 9 ? A GLN 11 12 1 Y 1 A GLU 280 ? A GLU 282 13 1 Y 1 A GLN 281 ? A GLN 283 14 1 Y 1 A LEU 282 ? A LEU 284 15 1 Y 1 A GLY 283 ? A GLY 285 16 1 Y 1 A HIS 284 ? A HIS 286 17 1 Y 1 A ASP 285 ? A ASP 287 18 1 Y 1 A GLU 286 ? A GLU 288 19 1 Y 1 A ASP 287 ? A ASP 289 20 1 Y 1 A GLU 288 ? A GLU 290 21 1 Y 1 A PHE 289 ? A PHE 291 22 1 Y 1 A GLN 290 ? A GLN 292 23 1 Y 1 A LYS 291 ? A LYS 293 24 1 Y 1 A LEU 292 ? A LEU 294 25 1 Y 1 A GLU 293 ? A GLU 295 26 1 Y 1 A LEU 294 ? A LEU 296 27 1 Y 1 A ASP 295 ? A ASP 297 28 1 Y 1 A MET 296 ? A MET 298 29 1 Y 1 A ARG 297 ? A ARG 299 30 1 Y 1 A LEU 298 ? A LEU 300 31 1 Y 1 A SER 299 ? A SER 301 32 1 Y 1 A SER 300 ? A SER 302 33 1 Y 1 A ASN 301 ? A ASN 303 34 1 Y 1 A GLY 302 ? A GLY 304 35 1 Y 1 A GLU 303 ? A GLU 305 36 1 Y 1 A ARG 304 ? A ARG 306 37 1 Y 1 A LEU 305 ? A LEU 307 38 1 Y 1 A GLU 306 ? A GLU 308 39 1 Y 1 A VAL 307 ? A VAL 309 40 1 Y 1 A LEU 308 ? A LEU 310 41 1 Y 1 A PHE 309 ? A PHE 311 42 1 Y 1 A GLN 310 ? A GLN 312 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 354590 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Rhodomonas lens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 51.533 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Agency for Medical Research and Development (AMED)' Japan JP21wm0525018 1 'Japan Society for the Promotion of Science (JSPS)' Japan 21H05142 2 'Japan Science and Technology' Japan JPMJPR1782 3 'Japan Science and Technology' Japan JPMJFR204S 4 'Japan Science and Technology' Japan JPMJCR21P3 5 'Other private' Japan ? 6 'National Institutes of Health/National Institute of Mental Health (NIH/NIMH)' Japan R01MH075957 7 'Other private' Japan ? 8 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id RET _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id RET _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 CHOLESTEROL CLR 4 'PALMITIC ACID' PLM 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'high-speed atomic force microscopy' #