HEADER HYDROLASE 21-DEC-21 7WD4 TITLE CRYSTAL STRUCTURE OF THE ILHEUS VIRUS HELICASE: IMPLICATIONS FOR TITLE 2 ENZYME FUNCTION AND DRUG DESIGN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 HELICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENVELOPE PROTEIN E,FLAVIVIRIN PROTEASE NS2B REGULATORY COMPND 5 SUBUNIT,FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT,GENOME POLYPROTEIN, COMPND 6 MATRIX PROTEIN,NON-STRUCTURAL PROTEIN 1,NON-STRUCTURAL PROTEIN 2A, COMPND 7 NON-STRUCTURAL PROTEIN 2B,NON-STRUCTURAL PROTEIN 3,NON-STRUCTURAL COMPND 8 PROTEIN 4A,NON-STRUCTURAL PROTEIN 4B,PEPTIDE 2K,PEPTIDE PR,PROTEIN COMPND 9 PRM,RNA-DIRECTED RNA POLYMERASE NS5,SERINE PROTEASE NS3,SERINE COMPND 10 PROTEASE SUBUNIT NS2B,SMALL ENVELOPE PROTEIN M; COMPND 11 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ILHEUS VIRUS; SOURCE 3 ORGANISM_COMMON: ILHV; SOURCE 4 ORGANISM_TAXID: 59563; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ILHEUS VIRUS, ATP HYDROLYSIS, MOLECULAR DOCKING., VIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.P.WANG,M.Y.WANG,X.ZHOU,W.M.WANG,J.M.CAO REVDAT 2 29-NOV-23 7WD4 1 REMARK REVDAT 1 25-JAN-23 7WD4 0 JRNL AUTH J.M.CAO,W.M.WANG,X.ZHOU,D.P.WANG,M.Y.WANG JRNL TITL CRYSTAL STRUCTURE OF THE ILHEUS VIRUS HELICASE: IMPLICATIONS JRNL TITL 2 FOR ENZYME FUNCTION AND DRUG DESIGN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3382 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.022 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3777 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3546 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5152 ; 1.729 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8170 ; 1.470 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;31.371 ;20.856 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;13.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.291 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4431 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 927 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2WV9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HYDROCHLORIDE, PH 8.5, 0.2 REMARK 280 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.22950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.10650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.11475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.10650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.34425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.10650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.10650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.11475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.10650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.10650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.34425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.22950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1040 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1177 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1186 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 73 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 VAL A 76 REMARK 465 LYS A 77 REMARK 465 ALA A 78 REMARK 465 GLU A 79 REMARK 465 HIS A 80 REMARK 465 SER A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 867 O HOH A 1041 1.48 REMARK 500 O HOH A 970 O HOH A 1106 1.65 REMARK 500 O HOH A 938 O HOH A 1109 1.88 REMARK 500 O HOH A 940 O HOH A 1093 1.88 REMARK 500 O1 GOL A 501 O HOH A 601 1.91 REMARK 500 O HOH A 953 O HOH A 973 1.92 REMARK 500 OE2 GLU A 299 O HOH A 602 1.97 REMARK 500 OE2 GLU A 363 O HOH A 603 2.08 REMARK 500 O THR A 100 O HOH A 604 2.11 REMARK 500 O HOH A 1122 O HOH A 1138 2.11 REMARK 500 O HOH A 904 O HOH A 1082 2.12 REMARK 500 OE1 GLU A 199 O HOH A 605 2.13 REMARK 500 O HOH A 970 O HOH A 1080 2.15 REMARK 500 O HOH A 670 O HOH A 1071 2.16 REMARK 500 NZ LYS A 206 O HOH A 606 2.16 REMARK 500 O HOH A 927 O HOH A 1075 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 971 O HOH A 1196 3645 2.03 REMARK 500 O HOH A 991 O HOH A 1012 3645 2.03 REMARK 500 O HOH A 736 O HOH A 1020 7556 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 -2.52 75.97 REMARK 500 ARG A 31 -53.36 68.50 REMARK 500 MET A 242 51.47 -112.49 REMARK 500 ASP A 403 44.11 34.54 REMARK 500 ARG A 420 72.68 -160.94 REMARK 500 TYR A 429 12.14 -142.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1210 DISTANCE = 5.85 ANGSTROMS DBREF 7WD4 A 5 446 UNP M9VV54 M9VV54_ILHV 1675 2116 SEQADV 7WD4 GLY A 1 UNP M9VV54 EXPRESSION TAG SEQADV 7WD4 PRO A 2 UNP M9VV54 EXPRESSION TAG SEQADV 7WD4 GLY A 3 UNP M9VV54 EXPRESSION TAG SEQADV 7WD4 SER A 4 UNP M9VV54 EXPRESSION TAG SEQRES 1 A 446 GLY PRO GLY SER GLU ALA PHE THR PRO ASP MET LEU LYS SEQRES 2 A 446 LYS ARG ARG LEU THR ILE LEU ASP LEU HIS PRO GLY ALA SEQRES 3 A 446 GLY LYS THR ARG ARG VAL ILE PRO GLN ILE VAL ARG GLU SEQRES 4 A 446 CYS VAL LYS ALA ARG LEU ARG THR VAL ILE LEU ALA PRO SEQRES 5 A 446 THR ARG VAL VAL ALA ALA GLU MET ALA GLU ALA LEU ARG SEQRES 6 A 446 GLY LEU PRO ILE ARG TYR GLN THR SER ALA VAL LYS ALA SEQRES 7 A 446 GLU HIS SER GLY ASN GLU ILE VAL ASP VAL MET CYS HIS SEQRES 8 A 446 ALA THR LEU THR GLN ARG LEU LEU THR PRO ALA LYS VAL SEQRES 9 A 446 PRO ASN TYR ASN VAL PHE VAL MET ASP GLU ALA HIS PHE SEQRES 10 A 446 THR ASP PRO ALA SER ILE ALA ALA ARG GLY TYR ILE SER SEQRES 11 A 446 THR LYS VAL GLU LEU GLY GLU ALA ALA ALA ILE PHE MET SEQRES 12 A 446 THR ALA THR PRO PRO GLY THR THR ASP PRO PHE PRO ASP SEQRES 13 A 446 SER ASN ALA PRO ILE ILE ASP GLN GLU ALA GLU ILE PRO SEQRES 14 A 446 ASP ARG ALA TRP ASN SER GLY PHE GLU TRP ILE THR GLU SEQRES 15 A 446 TYR THR GLY LYS THR VAL TRP PHE VAL PRO SER VAL ARG SEQRES 16 A 446 MET GLY ASN GLU ILE ALA MET CYS LEU THR LYS ALA GLY SEQRES 17 A 446 LYS LYS VAL ILE GLN LEU ASN ARG LYS SER TYR ASP SER SEQRES 18 A 446 GLU TYR GLN LYS CYS LYS GLY ASN ASP TRP ASP PHE VAL SEQRES 19 A 446 ILE THR THR ASP ILE SER GLU MET GLY ALA ASN PHE GLY SEQRES 20 A 446 ALA HIS ARG VAL ILE ASP SER ARG LYS CYS VAL LYS PRO SEQRES 21 A 446 VAL ILE LEU ASP GLY ASP ASP ARG VAL LEU MET ASN GLY SEQRES 22 A 446 PRO ALA PRO ILE THR PRO ALA SER ALA ALA GLN ARG ARG SEQRES 23 A 446 GLY ARG ILE GLY ARG ASP PRO THR GLN SER GLY ASP GLU SEQRES 24 A 446 TYR PHE TYR GLY GLY PRO THR THR THR ASP ASP THR GLY SEQRES 25 A 446 HIS ALA HIS TRP ILE GLU ALA LYS ILE LEU LEU ASP ASN SEQRES 26 A 446 ILE GLN LEU GLN ASN GLY LEU VAL ALA GLN LEU TYR GLY SEQRES 27 A 446 PRO GLU ARG ASP LYS VAL PHE THR THR ASP GLY GLU TYR SEQRES 28 A 446 ARG LEU ARG SER GLU GLN LYS LYS ASN PHE VAL GLU PHE SEQRES 29 A 446 LEU ARG THR GLY ASP LEU PRO VAL TRP LEU SER TYR LYS SEQRES 30 A 446 VAL ALA GLU ALA GLY TYR ALA TYR THR ASP ARG ARG TRP SEQRES 31 A 446 CYS PHE ASP GLY PRO ALA ASN ASN THR ILE LEU GLU ASP SEQRES 32 A 446 ASN ASN GLU VAL GLU ILE TRP THR ARG GLN GLY GLU LYS SEQRES 33 A 446 ARG ILE LEU ARG PRO ARG TRP SER ASP ALA ARG VAL TYR SEQRES 34 A 446 CYS ASP ASN GLN ALA LEU ARG SER PHE LYS GLU PHE ALA SEQRES 35 A 446 ALA GLY LYS ARG HET GOL A 501 6 HET EDO A 502 4 HET EDO A 503 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *610(H2 O) HELIX 1 AA1 THR A 8 LYS A 13 5 6 HELIX 2 AA2 ARG A 31 ALA A 43 1 13 HELIX 3 AA3 THR A 53 LEU A 64 1 12 HELIX 4 AA4 HIS A 91 THR A 100 1 10 HELIX 5 AA5 ASP A 119 LEU A 135 1 17 HELIX 6 AA6 PHE A 177 TYR A 183 1 7 HELIX 7 AA7 SER A 193 ALA A 207 1 15 HELIX 8 AA8 SER A 218 TYR A 223 1 6 HELIX 9 AA9 GLN A 224 LYS A 227 5 4 HELIX 10 AB1 ASP A 238 MET A 242 5 5 HELIX 11 AB2 THR A 278 GLY A 287 1 10 HELIX 12 AB3 ALA A 314 ASN A 325 1 12 HELIX 13 AB4 TYR A 337 VAL A 344 5 8 HELIX 14 AB5 ARG A 354 THR A 367 1 14 HELIX 15 AB6 PRO A 371 ALA A 381 1 11 HELIX 16 AB7 ASP A 387 PHE A 392 5 6 HELIX 17 AB8 PRO A 395 THR A 399 5 5 HELIX 18 AB9 ASP A 425 TYR A 429 5 5 HELIX 19 AC1 ASP A 431 ALA A 443 1 13 SHEET 1 AA1 6 LEU A 17 LEU A 20 0 SHEET 2 AA1 6 ALA A 139 MET A 143 1 O PHE A 142 N THR A 18 SHEET 3 AA1 6 VAL A 109 ASP A 113 1 N MET A 112 O MET A 143 SHEET 4 AA1 6 THR A 47 ALA A 51 1 N LEU A 50 O VAL A 111 SHEET 5 AA1 6 VAL A 86 CYS A 90 1 O ASP A 87 N THR A 47 SHEET 6 AA1 6 ILE A 69 TYR A 71 1 N ARG A 70 O VAL A 86 SHEET 1 AA2 6 ILE A 161 GLU A 165 0 SHEET 2 AA2 6 ASP A 298 TYR A 302 1 O ASP A 298 N ILE A 162 SHEET 3 AA2 6 ARG A 250 ASP A 253 1 N ASP A 253 O PHE A 301 SHEET 4 AA2 6 THR A 187 PHE A 190 1 N PHE A 190 O ILE A 252 SHEET 5 AA2 6 PHE A 233 THR A 236 1 O VAL A 234 N TRP A 189 SHEET 6 AA2 6 VAL A 211 LEU A 214 1 N ILE A 212 O ILE A 235 SHEET 1 AA3 2 LYS A 256 VAL A 261 0 SHEET 2 AA3 2 LEU A 270 PRO A 276 -1 O LEU A 270 N VAL A 261 SHEET 1 AA4 2 LEU A 401 GLU A 402 0 SHEET 2 AA4 2 ASN A 405 GLU A 406 -1 O ASN A 405 N GLU A 402 SHEET 1 AA5 2 GLU A 408 TRP A 410 0 SHEET 2 AA5 2 LYS A 416 ILE A 418 -1 O ARG A 417 N ILE A 409 CISPEP 1 GLY A 273 PRO A 274 0 -3.86 CRYST1 112.213 112.213 76.459 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013079 0.00000