HEADER OXIDOREDUCTASE 21-DEC-21 7WDE TITLE CRYSTAL STRUCTURE OF THE P450 BM3 HEME DOMAIN MUTANT F87L IN COMPLEX TITLE 2 WITH N-IMIDAZOLYL-HEXANOYL-L-PHENYLALANINE, STYRENE AND HYDROXYLAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYTOCHROME P450/NADPH--P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.1,1.6.2.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRIESTIA MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: BTA37_15100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DUAL-FUNCTIONAL SMALL MOLECULE, P450 HEME DOMAIN, COMPLEX, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIANG,S.DONG,Y.FENG,Z.CONG REVDAT 2 29-NOV-23 7WDE 1 REMARK REVDAT 1 28-DEC-22 7WDE 0 JRNL AUTH Y.JIANG,Z.CONG JRNL TITL CRYSTAL STRUCTURE OF THE P450 BM3 HEME DOMAIN MUTANT F87A IN JRNL TITL 2 COMPLEX WITH N-IMIDAZOLYL-HEXANOYL-L-PHENYLALANINE AND JRNL TITL 3 HYDROXYLAMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 61382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.260 REMARK 3 FREE R VALUE TEST SET COUNT : 3657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0100 - 6.2300 0.91 4187 144 0.1712 0.1805 REMARK 3 2 6.2300 - 4.9500 0.90 4173 137 0.1799 0.2297 REMARK 3 3 4.9500 - 4.3200 0.88 4112 133 0.1457 0.1706 REMARK 3 4 4.3200 - 3.9300 0.88 4045 136 0.1588 0.1906 REMARK 3 5 3.9300 - 3.6500 0.87 4012 138 0.1717 0.2109 REMARK 3 6 3.6500 - 3.4300 0.86 3967 130 0.1828 0.2359 REMARK 3 7 3.4300 - 3.2600 0.86 3964 140 0.2009 0.2386 REMARK 3 8 3.2600 - 3.1200 0.88 4093 139 0.2127 0.2468 REMARK 3 9 3.1200 - 3.0000 0.88 4092 141 0.2252 0.2803 REMARK 3 10 3.0000 - 2.8900 0.89 4073 141 0.2256 0.2617 REMARK 3 11 2.8900 - 2.8000 0.90 4144 144 0.2228 0.2677 REMARK 3 12 2.8000 - 2.7200 0.90 4243 144 0.2116 0.2859 REMARK 3 13 2.7200 - 2.6500 0.91 4128 135 0.2338 0.2373 REMARK 3 14 2.6500 - 2.5900 0.91 4231 143 0.2234 0.2751 REMARK 3 15 2.5900 - 2.5300 0.92 4324 143 0.2222 0.2517 REMARK 3 16 2.5300 - 2.4800 0.92 4208 142 0.2273 0.3211 REMARK 3 17 2.4800 - 2.4300 0.92 4283 137 0.2337 0.3086 REMARK 3 18 2.4300 - 2.3800 0.92 4283 147 0.2330 0.2823 REMARK 3 19 2.3800 - 2.3400 0.92 4203 145 0.2405 0.2871 REMARK 3 20 2.3400 - 2.3000 0.92 4295 144 0.2346 0.2588 REMARK 3 21 2.3000 - 2.2600 0.92 4341 147 0.2505 0.2579 REMARK 3 22 2.2600 - 2.2300 0.92 4189 142 0.2485 0.3103 REMARK 3 23 2.2300 - 2.1900 0.92 4288 141 0.2517 0.3162 REMARK 3 24 2.1900 - 2.1600 0.92 4253 146 0.2706 0.3238 REMARK 3 25 2.1600 - 2.1300 0.92 4318 142 0.2813 0.3043 REMARK 3 26 2.1300 - 2.1100 0.92 4172 136 0.2871 0.3341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.7478 -12.0328 0.7723 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.2388 REMARK 3 T33: 0.2391 T12: 0.0125 REMARK 3 T13: 0.0220 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.6811 L22: 0.5335 REMARK 3 L33: 0.4074 L12: 0.2669 REMARK 3 L13: 0.2832 L23: 0.2888 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.0301 S13: 0.0278 REMARK 3 S21: -0.0020 S22: 0.0195 S23: -0.0095 REMARK 3 S31: -0.0215 S32: 0.0084 S33: 0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 190 OR REMARK 3 RESID 194 THROUGH 224 OR (RESID 229 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 230 THROUGH 380 OR REMARK 3 (RESID 381 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 382 OR REMARK 3 (RESID 383 THROUGH 384 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 385 THROUGH 429 OR (RESID 430 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 431 THROUGH 455 REMARK 3 OR RESID 501 OR RESID 701)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 30 OR REMARK 3 (RESID 31 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 32 REMARK 3 THROUGH 181 OR (RESID 182 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 183 THROUGH 199 OR (RESID 200 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 201 THROUGH 223 REMARK 3 OR (RESID 224 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 229 THROUGH 455 OR RESID 501 OR RESID 701) REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 2712 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 73.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7EGN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 0.38 M MGCL2, 12-18% REMARK 280 PEG3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.97750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 SER A 226 REMARK 465 GLY A 227 REMARK 465 GLU A 228 REMARK 465 LEU A 456 REMARK 465 GLU A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 GLY B -1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 465 ALA B 191 REMARK 465 ASN B 192 REMARK 465 PRO B 193 REMARK 465 ALA B 225 REMARK 465 LEU B 456 REMARK 465 GLU B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 GLN A 169 CG CD OE1 NE2 REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 ASP A 195 CB CG OD1 OD2 REMARK 470 PRO A 196 CG CD REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 31 CD CE NZ REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 GLN B 169 CG CD OE1 NE2 REMARK 470 ASP B 194 CG OD1 OD2 REMARK 470 ASP B 195 CB CG OD1 OD2 REMARK 470 PRO B 196 CG CD REMARK 470 ASP B 199 CG OD1 OD2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 LYS B 224 CE NZ REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 470 ASP B 231 CG OD1 OD2 REMARK 470 ASN B 381 CG OD1 ND2 REMARK 470 SER B 383 OG REMARK 470 GLU B 430 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -127.28 60.49 REMARK 500 ASP A 84 39.38 -92.09 REMARK 500 PHE A 158 33.28 -143.18 REMARK 500 ASP A 195 46.49 -155.75 REMARK 500 GLU A 344 -6.83 -145.07 REMARK 500 ASP A 370 43.54 -86.85 REMARK 500 THR A 436 -130.58 -106.23 REMARK 500 LYS B 15 -126.22 54.40 REMARK 500 ASP B 84 39.53 -90.25 REMARK 500 PHE B 158 34.63 -142.82 REMARK 500 ASP B 370 43.62 -86.73 REMARK 500 THR B 436 -128.62 -107.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 752 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 753 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 754 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 755 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 95.2 REMARK 620 3 HEM A 501 NB 87.6 93.2 REMARK 620 4 HEM A 501 NC 90.4 174.4 87.2 REMARK 620 5 HEM A 501 ND 98.7 86.2 173.8 92.9 REMARK 620 6 HOA A 503 N 173.5 78.5 91.5 95.9 82.3 REMARK 620 7 HOA A 503 O 154.4 105.3 76.3 69.3 97.9 30.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 92.5 REMARK 620 3 HEM B 501 NB 85.7 87.1 REMARK 620 4 HEM B 501 NC 92.0 175.4 92.4 REMARK 620 5 HEM B 501 ND 98.7 88.1 173.6 92.1 REMARK 620 6 HOA B 503 N 173.5 87.1 87.9 88.3 87.8 REMARK 620 N 1 2 3 4 5 DBREF1 7WDE A 0 455 UNP A0A1Q8UP87_BACME DBREF2 7WDE A A0A1Q8UP87 1 456 DBREF1 7WDE B 0 455 UNP A0A1Q8UP87_BACME DBREF2 7WDE B A0A1Q8UP87 1 456 SEQADV 7WDE GLY A -1 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE LEU A 87 UNP A0A1Q8UP8 PHE 88 ENGINEERED MUTATION SEQADV 7WDE LEU A 456 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE GLU A 457 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS A 458 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS A 459 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS A 460 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS A 461 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS A 462 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS A 463 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE GLY B -1 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE LEU B 87 UNP A0A1Q8UP8 PHE 88 ENGINEERED MUTATION SEQADV 7WDE LEU B 456 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE GLU B 457 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS B 458 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS B 459 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS B 460 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS B 461 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS B 462 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDE HIS B 463 UNP A0A1Q8UP8 EXPRESSION TAG SEQRES 1 A 465 GLY MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE SEQRES 2 A 465 GLY GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS SEQRES 3 A 465 PRO VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY SEQRES 4 A 465 GLU ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG SEQRES 5 A 465 TYR LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP SEQRES 6 A 465 GLU SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS SEQRES 7 A 465 PHE VAL ARG ASP PHE ALA GLY ASP GLY LEU LEU THR SER SEQRES 8 A 465 TRP THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE SEQRES 9 A 465 LEU LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR SEQRES 10 A 465 HIS ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN SEQRES 11 A 465 LYS TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL SEQRES 12 A 465 PRO GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY SEQRES 13 A 465 LEU CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG SEQRES 14 A 465 ASP GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA SEQRES 15 A 465 LEU ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO SEQRES 16 A 465 ASP ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN SEQRES 17 A 465 GLU ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE SEQRES 18 A 465 ILE ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP SEQRES 19 A 465 LEU LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR SEQRES 20 A 465 GLY GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE SEQRES 21 A 465 ILE THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY SEQRES 22 A 465 LEU LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO SEQRES 23 A 465 HIS VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL SEQRES 24 A 465 LEU VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN SEQRES 25 A 465 LEU LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG SEQRES 26 A 465 LEU TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS SEQRES 27 A 465 GLU ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS SEQRES 28 A 465 GLY ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG SEQRES 29 A 465 ASP LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG SEQRES 30 A 465 PRO GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS SEQRES 31 A 465 ALA PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE SEQRES 32 A 465 GLY GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU SEQRES 33 A 465 GLY MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR SEQRES 34 A 465 ASN TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS SEQRES 35 A 465 PRO GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE SEQRES 36 A 465 PRO LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 465 GLY MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE SEQRES 2 B 465 GLY GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS SEQRES 3 B 465 PRO VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY SEQRES 4 B 465 GLU ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG SEQRES 5 B 465 TYR LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP SEQRES 6 B 465 GLU SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS SEQRES 7 B 465 PHE VAL ARG ASP PHE ALA GLY ASP GLY LEU LEU THR SER SEQRES 8 B 465 TRP THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE SEQRES 9 B 465 LEU LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR SEQRES 10 B 465 HIS ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN SEQRES 11 B 465 LYS TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL SEQRES 12 B 465 PRO GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY SEQRES 13 B 465 LEU CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG SEQRES 14 B 465 ASP GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA SEQRES 15 B 465 LEU ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO SEQRES 16 B 465 ASP ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN SEQRES 17 B 465 GLU ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE SEQRES 18 B 465 ILE ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP SEQRES 19 B 465 LEU LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR SEQRES 20 B 465 GLY GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE SEQRES 21 B 465 ILE THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY SEQRES 22 B 465 LEU LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO SEQRES 23 B 465 HIS VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL SEQRES 24 B 465 LEU VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN SEQRES 25 B 465 LEU LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG SEQRES 26 B 465 LEU TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS SEQRES 27 B 465 GLU ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS SEQRES 28 B 465 GLY ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG SEQRES 29 B 465 ASP LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG SEQRES 30 B 465 PRO GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS SEQRES 31 B 465 ALA PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE SEQRES 32 B 465 GLY GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU SEQRES 33 B 465 GLY MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR SEQRES 34 B 465 ASN TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS SEQRES 35 B 465 PRO GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE SEQRES 36 B 465 PRO LEU LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 501 43 HET IC6 A 502 24 HET HOA A 503 2 HET IC6 A 504 24 HET SYN A 505 8 HET SYN A 506 8 HET SYN A 507 8 HET GOL A 508 6 HET SYN A 509 8 HET HEM B 501 43 HET IC6 B 502 24 HET HOA B 503 2 HET IC6 B 504 24 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IC6 (2S)-2-(6-IMIDAZOL-1-YLHEXANOYLAMINO)-3-PHENYL- HETNAM 2 IC6 PROPANOIC ACID HETNAM HOA HYDROXYAMINE HETNAM SYN ETHENYLBENZENE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN SYN STYRENE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 IC6 4(C18 H23 N3 O3) FORMUL 5 HOA 2(H3 N O) FORMUL 7 SYN 4(C8 H8) FORMUL 10 GOL C3 H8 O3 FORMUL 16 HOH *327(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLU A 93 LEU A 104 1 12 HELIX 7 AA7 PRO A 105 PHE A 107 5 3 HELIX 8 AA8 SER A 108 ARG A 132 1 25 HELIX 9 AA9 VAL A 141 ASN A 159 1 19 HELIX 10 AB1 ASN A 163 ARG A 167 5 5 HELIX 11 AB2 HIS A 171 GLN A 189 1 19 HELIX 12 AB3 TYR A 198 ALA A 225 1 28 HELIX 13 AB4 ASP A 232 GLY A 240 1 9 HELIX 14 AB5 ASP A 250 ASN A 283 1 34 HELIX 15 AB6 ASN A 283 LEU A 298 1 16 HELIX 16 AB7 SER A 304 GLN A 310 1 7 HELIX 17 AB8 LEU A 311 TRP A 325 1 15 HELIX 18 AB9 ILE A 357 HIS A 361 1 5 HELIX 19 AC1 ASP A 363 GLY A 368 1 6 HELIX 20 AC2 ARG A 375 GLU A 380 5 6 HELIX 21 AC3 ASN A 381 ILE A 385 5 5 HELIX 22 AC4 ASN A 395 ALA A 399 5 5 HELIX 23 AC5 GLY A 402 HIS A 420 1 19 HELIX 24 AC6 PHE B 11 LYS B 15 5 5 HELIX 25 AC7 ASN B 16 ASN B 21 5 6 HELIX 26 AC8 LYS B 24 GLY B 37 1 14 HELIX 27 AC9 SER B 54 CYS B 62 1 9 HELIX 28 AD1 SER B 72 GLY B 83 1 12 HELIX 29 AD2 GLU B 93 LEU B 104 1 12 HELIX 30 AD3 PRO B 105 SER B 108 5 4 HELIX 31 AD4 ALA B 111 ARG B 132 1 22 HELIX 32 AD5 VAL B 141 ASN B 159 1 19 HELIX 33 AD6 ASN B 163 ARG B 167 5 5 HELIX 34 AD7 HIS B 171 GLN B 189 1 19 HELIX 35 AD8 TYR B 198 LYS B 224 1 27 HELIX 36 AD9 ASP B 232 GLY B 240 1 9 HELIX 37 AE1 ASP B 250 ASN B 283 1 34 HELIX 38 AE2 ASN B 283 LEU B 298 1 16 HELIX 39 AE3 SER B 304 GLN B 310 1 7 HELIX 40 AE4 LEU B 311 TRP B 325 1 15 HELIX 41 AE5 ILE B 357 HIS B 361 1 5 HELIX 42 AE6 ASP B 363 GLY B 368 1 6 HELIX 43 AE7 ARG B 375 GLU B 380 5 6 HELIX 44 AE8 ASN B 381 ILE B 385 5 5 HELIX 45 AE9 ASN B 395 ALA B 399 5 5 HELIX 46 AF1 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O MET A 354 N ARG A 50 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N LEU A 333 O LEU A 353 SHEET 5 AA1 5 PHE A 67 ASN A 70 -1 N ASN A 70 O SER A 332 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 ALA B 44 0 SHEET 2 AA5 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O MET B 354 N LEU B 52 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 AA5 5 PHE B 67 ASN B 70 -1 N ASP B 68 O TYR B 334 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.41 LINK FE HEM A 501 N HOA A 503 1555 1555 2.27 LINK FE HEM A 501 O HOA A 503 1555 1555 2.79 LINK SG CYS B 400 FE HEM B 501 1555 1555 2.29 LINK FE HEM B 501 N HOA B 503 1555 1555 2.46 CRYST1 58.891 147.955 64.581 90.00 99.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016981 0.000000 0.002892 0.00000 SCALE2 0.000000 0.006759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015707 0.00000