HEADER HYDROLASE 22-DEC-21 7WDR TITLE CRYSTAL STRUCTURES OF MEBGLD2 IN COMPLEX WITH VARIOUS SACCHARIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE FAMILY 1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WATANABE,T.MATSUZAWA,Y.NAKAMICHI,H.AKITA,K.YAOI REVDAT 2 29-NOV-23 7WDR 1 REMARK REVDAT 1 02-NOV-22 7WDR 0 JRNL AUTH T.MATSUZAWA,M.WATANABE,Y.NAKAMICHI,H.AKITA,K.YAOI JRNL TITL CRYSTAL STRUCTURE OF METAGENOMIC BETA-GLYCOSIDASE MEBGLD2 IN JRNL TITL 2 COMPLEX WITH VARIOUS SACCHARIDES JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 106 4539 2022 JRNL REFN ESSN 1432-0614 JRNL DOI 10.1007/S00253-022-12018-6 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 44464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3598 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3771 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3280 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5153 ; 1.778 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7567 ; 1.251 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 7.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;32.863 ;21.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;17.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4308 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1779 ; 5.276 ; 5.931 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1778 ; 5.270 ; 5.926 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2222 ; 6.739 ; 8.880 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2223 ; 6.742 ; 8.886 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1988 ; 5.386 ; 6.269 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1976 ; 5.339 ; 6.257 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2909 ; 7.105 ; 9.257 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4262 ; 8.685 ;67.578 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4259 ; 8.685 ;67.562 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7WDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL BUFFER (PH 8.5), 1.2 M REMARK 280 LITHIUM SULFATE, 0.01 M NICKEL CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 100.92350 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 100.92350 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 100.92350 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 100.92350 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 100.92350 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 100.92350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 451 REMARK 465 PRO A 452 REMARK 465 GLN A 453 REMARK 465 THR A 454 REMARK 465 THR A 455 REMARK 465 LEU A 456 REMARK 465 PRO A 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 63 NE2 HIS A 63 38555 1.54 REMARK 500 CE1 HIS A 63 NE2 HIS A 63 38555 1.87 REMARK 500 O HOH A 636 O HOH A 636 38555 2.06 REMARK 500 OE2 GLU A 323 OE2 GLU A 323 22565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 8 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 HIS A 63 CB - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 HIS A 63 CA - CB - CG ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 58 -125.01 46.24 REMARK 500 TRP A 126 6.04 90.76 REMARK 500 ASP A 127 55.56 -114.45 REMARK 500 THR A 167 -77.87 -77.24 REMARK 500 GLU A 170 69.05 64.70 REMARK 500 TYR A 299 -43.57 -132.29 REMARK 500 ASP A 328 32.20 71.93 REMARK 500 ALA A 356 116.77 -164.06 REMARK 500 ASP A 362 98.98 -67.22 REMARK 500 ALA A 368 2.21 -68.26 REMARK 500 ASP A 373 67.76 -115.69 REMARK 500 GLU A 410 57.06 -90.56 REMARK 500 TRP A 411 -130.55 50.98 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7WDR A 2 455 UNP A0A1E1FFN6_9ZZZZ DBREF2 7WDR A A0A1E1FFN6 2 455 SEQADV 7WDR MET A 0 UNP A0A1E1FFN INITIATING METHIONINE SEQADV 7WDR VAL A 1 UNP A0A1E1FFN EXPRESSION TAG SEQADV 7WDR ALA A 356 UNP A0A1E1FFN GLU 356 ENGINEERED MUTATION SEQADV 7WDR LEU A 456 UNP A0A1E1FFN EXPRESSION TAG SEQADV 7WDR PRO A 457 UNP A0A1E1FFN EXPRESSION TAG SEQRES 1 A 458 MET VAL SER THR GLN ASN GLU PRO HIS ARG PHE PRO PRO SEQRES 2 A 458 ASP PHE GLN TRP GLY VAL ALA THR SER SER TYR GLN ILE SEQRES 3 A 458 GLU GLY ALA VAL GLU ALA ASP GLY ARG SER PRO SER ILE SEQRES 4 A 458 TRP ASP THR PHE CYS ALA ARG PRO GLY ALA ILE ALA ASP SEQRES 5 A 458 GLY SER THR GLY ALA ILE ALA ASN ASP HIS TYR HIS ARG SEQRES 6 A 458 TYR ARG GLU ASP ILE ALA ILE MET LYS GLN LEU GLY VAL SEQRES 7 A 458 ASN ALA TYR ARG PHE SER ILE ALA TRP PRO ARG ILE LEU SEQRES 8 A 458 PRO ASP GLY ARG GLY ARG VAL ASN GLN ALA GLY VAL ASP SEQRES 9 A 458 PHE TYR GLU ARG LEU VAL ASP SER LEU LEU GLU GLN GLY SEQRES 10 A 458 ILE GLU PRO TYR ALA THR LEU TYR HIS TRP ASP MET PRO SEQRES 11 A 458 GLN VAL GLN HIS ASP ARG THR PRO TRP TYR ASP ARG GLY SEQRES 12 A 458 VAL VAL ASP ALA PHE VAL GLU TYR THR ASP VAL ILE THR SEQRES 13 A 458 ARG ARG LEU SER ASP ARG VAL LYS TYR TRP MET THR LEU SEQRES 14 A 458 ASN GLU PRO TRP VAL ILE SER PHE LEU GLY TYR GLY ALA SEQRES 15 A 458 GLY GLU HIS ALA PRO GLY LEU ARG ASP LYS GLU LEU TYR SEQRES 16 A 458 LEU ARG ALA ALA HIS HIS VAL LEU LEU ALA HIS GLY LYS SEQRES 17 A 458 ALA MET PRO VAL ILE ARG ALA ASN GLY ASN ALA GLN THR SEQRES 18 A 458 LYS ALA GLY ILE VAL LEU ASN LEU ASN TRP VAL ASN ALA SEQRES 19 A 458 ALA SER ASP SER PRO GLU ASP GLN ALA ALA ALA ARG ARG SEQRES 20 A 458 TYR ASP GLN PHE PHE ASN ARG TRP PHE ALA GLU PRO LEU SEQRES 21 A 458 TYR ASN GLY ARG TYR PRO GLU GLU LEU LEU GLU TRP TYR SEQRES 22 A 458 GLY ARG ASP LEU VAL PRO VAL GLN PRO GLY ASP PHE ASP SEQRES 23 A 458 ILE ILE THR THR PRO THR ASP PHE LEU ALA VAL ASN TYR SEQRES 24 A 458 TYR ALA ARG THR THR VAL LYS ALA GLY SER THR ASP PRO SEQRES 25 A 458 MET LEU GLN VAL ASP PHE VAL ARG PRO PRO GLY GLU TYR SEQRES 26 A 458 THR ALA MET ASP TRP GLU VAL TYR PRO GLN GLY LEU TYR SEQRES 27 A 458 ASN ILE LEU ASN TRP LEU HIS THR ASP TYR ALA PRO PRO SEQRES 28 A 458 ALA LEU TYR VAL THR ALA ASN GLY ALA ALA TYR ASP ASP SEQRES 29 A 458 GLN VAL SER ALA ALA GLY GLU VAL ASP ASP PRO GLN ARG SEQRES 30 A 458 LEU ALA TYR LEU GLU GLY HIS PHE GLU ALA ALA TYR ARG SEQRES 31 A 458 ALA ILE GLN ALA GLY ILE PRO LEU LYS GLY TYR PHE VAL SEQRES 32 A 458 TRP SER LEU MET ASP ASN PHE GLU TRP GLY ARG GLY PHE SEQRES 33 A 458 GLU LYS ARG PHE GLY ILE VAL PHE VAL ASP TYR ALA THR SEQRES 34 A 458 GLN GLN ARG ILE ILE LYS ARG SER GLY LYS TRP PHE SER SEQRES 35 A 458 GLN VAL THR ARG ALA ASN GLY LEU PRO ALA PRO GLN THR SEQRES 36 A 458 THR LEU PRO HET PNW A 501 21 HET PNW A 502 21 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HETNAM PNW 4-NITROPHENYL BETA-D-GLUCOPYRANOSIDE HETNAM SO4 SULFATE ION HETSYN PNW 4'-NITROPHENYL-BETA-D-GLUCOPYRANOSIDE; 4-NITROPHENYL HETSYN 2 PNW BETA-D-GLUCOSIDE; 4-NITROPHENYL D-GLUCOSIDE; 4- HETSYN 3 PNW NITROPHENYL GLUCOSIDE FORMUL 2 PNW 2(C12 H15 N O8) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *41(H2 O) HELIX 1 AA1 SER A 21 GLU A 26 1 6 HELIX 2 AA2 GLU A 30 ARG A 34 5 5 HELIX 3 AA3 SER A 37 CYS A 43 1 7 HELIX 4 AA4 ASP A 60 GLY A 76 1 17 HELIX 5 AA5 ALA A 85 LEU A 90 1 6 HELIX 6 AA6 ASN A 98 GLN A 115 1 18 HELIX 7 AA7 PRO A 129 THR A 136 1 8 HELIX 8 AA8 GLY A 142 SER A 159 1 18 HELIX 9 AA9 GLU A 170 GLY A 180 1 11 HELIX 10 AB1 ASP A 190 GLY A 216 1 27 HELIX 11 AB2 SER A 237 ASN A 252 1 16 HELIX 12 AB3 ASN A 252 GLY A 262 1 11 HELIX 13 AB4 PRO A 265 GLY A 273 1 9 HELIX 14 AB5 ARG A 274 VAL A 277 5 4 HELIX 15 AB6 GLY A 282 THR A 288 1 7 HELIX 16 AB7 TYR A 332 ALA A 348 1 17 HELIX 17 AB8 ASP A 373 ALA A 393 1 21 HELIX 18 AB9 GLU A 410 LYS A 417 5 8 HELIX 19 AC1 LYS A 434 ALA A 446 1 13 SHEET 1 AA1 2 HIS A 8 ARG A 9 0 SHEET 2 AA1 2 GLY A 448 LEU A 449 -1 O LEU A 449 N HIS A 8 SHEET 1 AA2 9 GLN A 15 ALA A 19 0 SHEET 2 AA2 9 ALA A 79 SER A 83 1 O ARG A 81 N VAL A 18 SHEET 3 AA2 9 GLU A 118 TYR A 124 1 O THR A 122 N PHE A 82 SHEET 4 AA2 9 TYR A 164 ASN A 169 1 O MET A 166 N LEU A 123 SHEET 5 AA2 9 LYS A 221 ASN A 227 1 O VAL A 225 N LEU A 168 SHEET 6 AA2 9 LEU A 294 ASN A 297 1 O ASN A 297 N LEU A 226 SHEET 7 AA2 9 LEU A 352 ASN A 357 1 O TYR A 353 N VAL A 296 SHEET 8 AA2 9 LEU A 397 TRP A 403 1 O PHE A 401 N VAL A 354 SHEET 9 AA2 9 GLN A 15 ALA A 19 1 N GLY A 17 O TYR A 400 SHEET 1 AA3 3 TRP A 230 ALA A 233 0 SHEET 2 AA3 3 ARG A 301 ALA A 306 1 O THR A 302 N TRP A 230 SHEET 3 AA3 3 VAL A 315 VAL A 318 -1 O ASP A 316 N LYS A 305 SHEET 1 AA4 2 VAL A 422 VAL A 424 0 SHEET 2 AA4 2 ARG A 431 ILE A 433 -1 O ILE A 432 N PHE A 423 CISPEP 1 ALA A 185 PRO A 186 0 0.52 CISPEP 2 TRP A 403 SER A 404 0 2.88 CRYST1 201.847 201.847 201.847 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004954 0.00000