HEADER HYDROLASE 22-DEC-21 7WDU TITLE 6-SULFO-BETA-D-N-ACETYLGLUCOSAMINIDASE FROM BIFIDOBACTERIUM BIFIDUM IN TITLE 2 COMPLEX WITH PUGNAC-6S COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-N-ACETYLHEXOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.52; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM BIFIDUM JCM 1254; SOURCE 3 ORGANISM_TAXID: 398514; SOURCE 4 GENE: BBHII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DELTA-LACZ-CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS GLYCOSIDE HYDROLASE FAMILY 20, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KASHIMA,C.YAMADA,S.FUSHINOBU,T.KATOH,T.KATAYAMA REVDAT 3 14-JUN-23 7WDU 1 JRNL REVDAT 2 15-MAR-23 7WDU 1 JRNL REVDAT 1 28-DEC-22 7WDU 0 JRNL AUTH T.KATOH,C.YAMADA,M.D.WALLACE,A.YOSHIDA,A.GOTOH,M.ARAI, JRNL AUTH 2 T.MAESHIBU,T.KASHIMA,A.HAGENBEEK,M.N.OJIMA,H.TAKADA, JRNL AUTH 3 M.SAKANAKA,H.SHIMIZU,K.NISHIYAMA,H.ASHIDA,J.HIROSE, JRNL AUTH 4 M.SUAREZ-DIEZ,M.NISHIYAMA,I.KIMURA,K.A.STUBBS,S.FUSHINOBU, JRNL AUTH 5 T.KATAYAMA JRNL TITL A BACTERIAL SULFOGLYCOSIDASE HIGHLIGHTS MUCIN O-GLYCAN JRNL TITL 2 BREAKDOWN IN THE GUT ECOSYSTEM. JRNL REF NAT.CHEM.BIOL. V. 19 778 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36864192 JRNL DOI 10.1038/S41589-023-01272-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KATOH,T.MAESHIBU,K.I.KIKKAWA,A.GOTOH,Y.TOMABECHI, REMARK 1 AUTH 2 M.NAKAMURA,W.H.LIAO,M.YAMAGUCHI,H.ASHIDA,K.YAMAMOTO, REMARK 1 AUTH 3 T.KATAYAMA REMARK 1 TITL IDENTIFICATION AND CHARACTERIZATION OF A SULFOGLYCOSIDASE REMARK 1 TITL 2 FROM BIFIDOBACTERIUM BIFIDUM IMPLICATED IN MUCIN GLYCAN REMARK 1 TITL 3 UTILIZATION. REMARK 1 REF BIOSCI BIOTECHNOL BIOCHEM V. 81 2018 2017 REMARK 1 REFN ISSN 1347-6947 REMARK 1 PMID 28814130 REMARK 1 DOI 10.1080/09168451.2017.1361810 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.400 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6438 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5829 ; 0.036 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8780 ; 1.520 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13425 ; 2.400 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 816 ; 7.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;35.338 ;23.123 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 995 ;13.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 872 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7433 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1461 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 49.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3000, 0.1 M SODIUM REMARK 280 CITRATE PH 5.5, 1 MM PUGNAC-6S, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.47350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 GLU A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 THR A 44 REMARK 465 SER A 45 REMARK 465 THR A 796 REMARK 465 GLU A 847 REMARK 465 ALA A 848 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 -132.58 -86.57 REMARK 500 ASN A 427 -145.02 -128.50 REMARK 500 ALA A 489 112.78 -39.57 REMARK 500 THR A 536 -8.78 74.44 REMARK 500 MET A 545 58.56 -91.69 REMARK 500 TRP A 607 -30.47 -143.10 REMARK 500 PHE A 740 145.00 -171.39 REMARK 500 ALA A 792 -163.32 -100.84 REMARK 500 VAL A 798 118.73 -165.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 71 O REMARK 620 2 ASP A 74 OD1 77.1 REMARK 620 3 SER A 94 O 90.4 138.6 REMARK 620 4 SER A 94 OG 91.6 70.9 70.1 REMARK 620 5 TRP A 188 O 84.1 134.6 81.5 151.3 REMARK 620 6 GLU A 189 OE2 111.0 66.8 151.8 125.0 82.7 REMARK 620 N 1 2 3 4 5 DBREF 7WDU A 39 861 UNP D4QAP5 D4QAP5_BIFBI 39 861 SEQADV 7WDU MET A 38 UNP D4QAP5 INITIATING METHIONINE SEQADV 7WDU HIS A 862 UNP D4QAP5 EXPRESSION TAG SEQADV 7WDU HIS A 863 UNP D4QAP5 EXPRESSION TAG SEQADV 7WDU HIS A 864 UNP D4QAP5 EXPRESSION TAG SEQADV 7WDU HIS A 865 UNP D4QAP5 EXPRESSION TAG SEQADV 7WDU HIS A 866 UNP D4QAP5 EXPRESSION TAG SEQADV 7WDU HIS A 867 UNP D4QAP5 EXPRESSION TAG SEQRES 1 A 830 MET ALA ALA GLU SER SER THR SER THR VAL SER ASN LEU SEQRES 2 A 830 ALA THR MET ALA THR VAL THR ALA SER GLY ARG GLU VAL SEQRES 3 A 830 SER SER GLY PHE GLY PRO GLU LEU ALA ALA ASP ASN GLN SEQRES 4 A 830 ASP LEU PRO ASP ASN PRO THR ASP LYS SER VAL HIS ASN SEQRES 5 A 830 ALA SER GLY ALA SER ARG TRP SER ALA ASP ARG GLY SER SEQRES 6 A 830 GLY PRO TRP TRP LEU ALA TYR GLU PHE PRO GLY GLU ALA SEQRES 7 A 830 THR ILE SER SER VAL ASN ILE ALA TRP GLY ASN THR TYR SEQRES 8 A 830 ALA THR ASN TYR SER ILE GLN THR SER ASP ASP GLY SER SEQRES 9 A 830 ASN TRP THR ASP VAL LYS THR GLY LEU LYS ALA THR ALA SEQRES 10 A 830 GLN ALA GLN TRP VAL LYS THR THR PHE ASP THR PRO ILE SEQRES 11 A 830 LYS THR ARG HIS ILE ARG MET ILE ALA THR THR LYS SER SEQRES 12 A 830 GLN SER TRP SER LEU SER VAL TRP GLU MET ARG THR MET SEQRES 13 A 830 GLY THR ILE SER ALA VAL ALA THR ASP PRO LEU SER ARG SEQRES 14 A 830 LEU THR PRO ARG PRO LEU TYR ALA GLN SER ALA ASP GLY SEQRES 15 A 830 GLU ALA PHE GLU LEU LYS LYS ASN THR CYS VAL SER VAL SEQRES 16 A 830 SER ASP GLY SER LEU LEU PRO ALA VAL ASP VAL MET ARG SEQRES 17 A 830 ASP GLU LEU GLY THR SER TYR GLY LEU LYS LEU ALA GLU SEQRES 18 A 830 GLY THR ASN CYS PRO ILE THR PHE THR LEU ASP GLU ASN SEQRES 19 A 830 LEU ASP VAL THR GLY HIS VAL GLY SER ALA GLN SER ILE SEQRES 20 A 830 THR ALA ASP GLU ALA TYR THR ILE VAL SER ASP ALA ASP SEQRES 21 A 830 SER VAL THR VAL LYS ALA ARG SER ALA THR ALA GLY ILE SEQRES 22 A 830 TRP ALA ALA GLN THR LEU LEU GLN LEU ILE GLY PRO TRP SEQRES 23 A 830 THR ASN SER THR VAL LYS LEU ALA ASP VAL ALA PHE ILE SEQRES 24 A 830 PRO ALA VAL ASN ILE ALA ASP ALA PRO ARG TYR GLN TRP SEQRES 25 A 830 ARG GLY VAL LEU VAL ASP PRO ALA ARG SER PHE TYR PRO SEQRES 26 A 830 LEU ASP GLU MET LYS GLN MET ILE ASP VAL MET SER ALA SEQRES 27 A 830 TYR LYS MET ASN THR LEU HIS LEU HIS LEU SER GLU ASP SEQRES 28 A 830 GLU GLY PHE ARG VAL GLU ILE THR ASN ASP GLY ARG ALA SEQRES 29 A 830 ASP GLY ASP THR THR ASP TYR THR GLN LEU ALA ILE LYS SEQRES 30 A 830 SER GLY ALA ILE SER TYR GLN SER ALA TRP THR SER ASN SEQRES 31 A 830 TRP SER PRO ALA GLN ASP GLY ARG THR GLY TYR TRP THR SEQRES 32 A 830 GLN SER GLU PHE ILE GLU LEU VAL ALA TYR ALA ALA ASP SEQRES 33 A 830 HIS GLY ILE ALA ILE VAL PRO GLU ILE ASP GLY PRO GLY SEQRES 34 A 830 HIS SER PHE SER LEU LEU HIS GLY LEU ALA GLU LEU ASN SEQRES 35 A 830 THR GLY ASN SER ASN PRO LYS PRO ALA ALA GLY GLU ASP SEQRES 36 A 830 THR PRO ALA PHE ILE GLN SER ALA GLN GLY ARG SER SER SEQRES 37 A 830 LEU ALA THR ASP ALA ASP ILE THR TYR THR VAL LEU GLY SEQRES 38 A 830 HIS ILE MET ASP GLN LEU ASP GLY MET ILE ASP LYS GLY SEQRES 39 A 830 ILE LYS ALA SER THR MET PRO ALA SER GLU LEU LYS ARG SEQRES 40 A 830 MET TYR PHE HIS LEU GLY GLY ASP GLU LEU PHE LEU SER SEQRES 41 A 830 GLY GLY ALA GLY ASN LYS THR GLU ARG LEU GLN GLU TYR SEQRES 42 A 830 LEU GLY ARG SER GLY ALA LEU VAL LYS GLU ARG ASP LYS SEQRES 43 A 830 THR THR ILE VAL TRP ASN ASP GLY LEU ASP ALA VAL ASP SEQRES 44 A 830 GLN ILE PRO GLU GLY SER VAL VAL GLN HIS TRP THR GLY SEQRES 45 A 830 ASN ALA ALA ASN ASN ALA SER ILE GLN LYS LEU LEU ASN SEQRES 46 A 830 GLN ARG ASN GLY LYS ILE ILE MET SER PRO ALA GLY ASN SEQRES 47 A 830 THR TYR PHE PRO GLN ARG PRO GLY THR GLU THR THR GLY SEQRES 48 A 830 VAL THR TRP ALA CYS GLY ALA CYS THR THR SER ASN PHE SEQRES 49 A 830 TYR GLN TRP ASN PRO THR SER SER ALA GLY THR THR GLU SEQRES 50 A 830 ASP LYS VAL LEU GLY VAL GLU ASP ALA LEU TRP SER GLU SEQRES 51 A 830 HIS LEU ARG SER LEU ASN ASP ALA GLU PHE LEU MET TYR SEQRES 52 A 830 THR ARG MET MET ALA THR ALA GLU VAL GLY TRP THR GLN SEQRES 53 A 830 GLN ASN ARG LYS ASP TYR ASP ASN TRP ASN LYS ARG VAL SEQRES 54 A 830 GLY ASP ILE ALA ILE ASP LEU MET ASN ARG GLY ALA ASN SEQRES 55 A 830 PHE HIS LYS ALA THR GLU VAL THR SER TRP LYS GLY SER SEQRES 56 A 830 TYR ALA ALA VAL ASP ALA ALA GLU GLN LYS VAL THR ASP SEQRES 57 A 830 GLY LYS VAL LEU VAL GLY ARG TYR ALA GLU PRO GLY LEU SEQRES 58 A 830 THR GLY THR ASP GLY LEU SER PHE THR ALA THR TYR THR SEQRES 59 A 830 ALA GLU GLY GLY THR ALA VAL ASN LEU PRO VAL THR PRO SEQRES 60 A 830 ASP MET LYS GLN THR TYR SER GLN GLN GLN LEU LYS ASN SEQRES 61 A 830 GLY ARG LEU VAL VAL ASN GLY ALA HIS MET ASN SER ILE SEQRES 62 A 830 VAL ASP VAL TYR VAL THR LEU PRO SER ASP VAL LEU ALA SEQRES 63 A 830 ALA ASP SER GLU ALA VAL GLY ARG LEU ASP VAL SER VAL SEQRES 64 A 830 SER SER SER THR TYR HIS HIS HIS HIS HIS HIS HET 8R9 A 901 29 HET 8R9 A 902 29 HET CA A 903 1 HETNAM 8R9 [[(3R,4R,5S,6R)-3-ACETAMIDO-4,5-BIS(OXIDANYL)-6- HETNAM 2 8R9 (SULFOOXYMETHYL)OXAN-2-YLIDENE]AMINO] N- HETNAM 3 8R9 PHENYLCARBAMATE HETNAM CA CALCIUM ION FORMUL 2 8R9 2(C15 H19 N3 O10 S) FORMUL 4 CA CA 2+ FORMUL 5 HOH *112(H2 O) HELIX 1 AA1 ALA A 51 ALA A 54 5 4 HELIX 2 AA2 GLY A 68 ALA A 73 5 6 HELIX 3 AA3 ASP A 84 ASN A 89 1 6 HELIX 4 AA4 ASP A 234 SER A 236 5 3 HELIX 5 AA5 LEU A 237 GLY A 253 1 17 HELIX 6 AA6 VAL A 274 VAL A 278 5 5 HELIX 7 AA7 THR A 285 GLU A 288 5 4 HELIX 8 AA8 SER A 305 GLY A 321 1 17 HELIX 9 AA9 PRO A 362 TYR A 376 1 15 HELIX 10 AB1 TYR A 408 GLY A 416 1 9 HELIX 11 AB2 GLN A 421 THR A 425 5 5 HELIX 12 AB3 THR A 440 ASP A 453 1 14 HELIX 13 AB4 SER A 468 LEU A 475 1 8 HELIX 14 AB5 ALA A 476 ASN A 479 5 4 HELIX 15 AB6 ILE A 497 GLN A 501 5 5 HELIX 16 AB7 ALA A 510 THR A 536 1 27 HELIX 17 AB8 PRO A 538 LYS A 543 1 6 HELIX 18 AB9 ASN A 562 ARG A 581 1 20 HELIX 19 AC1 ASP A 590 VAL A 595 5 6 HELIX 20 AC2 ASN A 610 ASN A 613 5 4 HELIX 21 AC3 ASN A 614 ARG A 624 1 11 HELIX 22 AC4 PRO A 632 TYR A 637 1 6 HELIX 23 AC5 THR A 657 GLN A 663 1 7 HELIX 24 AC6 ASN A 665 GLY A 671 1 7 HELIX 25 AC7 THR A 673 ASP A 675 5 3 HELIX 26 AC8 SER A 691 TYR A 700 1 10 HELIX 27 AC9 THR A 701 THR A 712 1 12 HELIX 28 AD1 GLN A 713 LYS A 717 5 5 HELIX 29 AD2 ASP A 718 ARG A 725 1 8 HELIX 30 AD3 ARG A 725 GLY A 737 1 13 HELIX 31 AD4 ASP A 757 GLN A 761 5 5 SHEET 1 AA1 4 SER A 48 ASN A 49 0 SHEET 2 AA1 4 SER A 186 SER A 197 -1 O GLY A 194 N SER A 48 SHEET 3 AA1 4 TRP A 105 TRP A 124 -1 N ASN A 121 O ARG A 191 SHEET 4 AA1 4 TRP A 96 SER A 97 0 SHEET 1 AA2 6 THR A 55 ALA A 58 0 SHEET 2 AA2 6 TRP A 105 TRP A 124 -1 O ALA A 108 N THR A 57 SHEET 3 AA2 6 SER A 186 SER A 197 -1 O ARG A 191 N ASN A 121 SHEET 4 AA2 6 GLN A 157 LYS A 179 0 SHEET 5 AA2 6 ALA A 129 SER A 137 -1 N SER A 133 O ILE A 175 SHEET 6 AA2 6 THR A 144 LEU A 150 -1 O VAL A 146 N ILE A 134 SHEET 1 AA3 6 TYR A 213 SER A 216 0 SHEET 2 AA3 6 VAL A 339 ASP A 343 -1 O ASN A 340 N GLN A 215 SHEET 3 AA3 6 TYR A 290 SER A 294 -1 N ILE A 292 O ILE A 341 SHEET 4 AA3 6 VAL A 299 ALA A 303 -1 O THR A 300 N VAL A 293 SHEET 5 AA3 6 ILE A 264 LEU A 268 1 N THR A 265 O VAL A 301 SHEET 6 AA3 6 VAL A 230 VAL A 232 1 N SER A 231 O PHE A 266 SHEET 1 AA4 2 PHE A 222 GLU A 223 0 SHEET 2 AA4 2 PHE A 335 ILE A 336 -1 O ILE A 336 N PHE A 222 SHEET 1 AA510 GLY A 390 PHE A 391 0 SHEET 2 AA510 THR A 380 GLU A 387 -1 N GLU A 387 O GLY A 390 SHEET 3 AA510 ALA A 457 GLY A 464 1 O ALA A 457 N LEU A 381 SHEET 4 AA510 TYR A 546 GLY A 550 1 O HIS A 548 N PRO A 460 SHEET 5 AA510 THR A 584 TRP A 588 1 O TRP A 588 N GLY A 550 SHEET 6 AA510 VAL A 603 HIS A 606 1 O VAL A 603 N THR A 585 SHEET 7 AA510 LYS A 627 MET A 630 1 O ILE A 629 N VAL A 604 SHEET 8 AA510 VAL A 677 LEU A 684 1 O GLY A 679 N MET A 630 SHEET 9 AA510 TRP A 349 VAL A 354 1 N TRP A 349 O LEU A 678 SHEET 10 AA510 THR A 380 GLU A 387 1 O HIS A 382 N VAL A 354 SHEET 1 AA6 4 SER A 752 ALA A 755 0 SHEET 2 AA6 4 LYS A 767 ALA A 774 -1 O ALA A 774 N SER A 752 SHEET 3 AA6 4 VAL A 831 THR A 836 -1 O VAL A 831 N TYR A 773 SHEET 4 AA6 4 VAL A 802 ASP A 805 -1 N ASP A 805 O ASP A 832 SHEET 1 AA7 4 VAL A 798 LEU A 800 0 SHEET 2 AA7 4 SER A 785 TYR A 790 -1 N TYR A 790 O VAL A 798 SHEET 3 AA7 4 LEU A 852 SER A 857 -1 O SER A 855 N THR A 787 SHEET 4 AA7 4 HIS A 862 HIS A 866 -1 O HIS A 863 N VAL A 856 SHEET 1 AA8 2 LEU A 815 LYS A 816 0 SHEET 2 AA8 2 ARG A 819 LEU A 820 -1 O ARG A 819 N LYS A 816 SSBOND 1 CYS A 229 CYS A 262 1555 1555 2.10 SSBOND 2 CYS A 653 CYS A 656 1555 1555 2.07 LINK O LEU A 71 CA CA A 903 1555 1555 2.37 LINK OD1 ASP A 74 CA CA A 903 1555 1555 2.71 LINK O SER A 94 CA CA A 903 1555 1555 2.24 LINK OG SER A 94 CA CA A 903 1555 1555 2.39 LINK O TRP A 188 CA CA A 903 1555 1555 2.36 LINK OE2 GLU A 189 CA CA A 903 1555 1555 2.63 CISPEP 1 GLY A 103 PRO A 104 0 3.67 CISPEP 2 THR A 208 PRO A 209 0 -3.10 CISPEP 3 GLY A 464 PRO A 465 0 3.53 CISPEP 4 ASN A 484 PRO A 485 0 -15.97 CISPEP 5 TYR A 700 THR A 701 0 12.22 CRYST1 77.404 58.947 84.353 90.00 91.70 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012919 0.000000 0.000384 0.00000 SCALE2 0.000000 0.016964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011860 0.00000