HEADER PROTEIN TRANSPORT 26-DEC-21 7WF6 TITLE CRYSTAL STRUCTURE OF SNX13 RGS DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-13; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RGS DOMAIN- AND PHOX DOMAIN-CONTAINING PROTEIN,RGS-PX1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNX13, KIAA0713; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SORTING NEXIN, RGS, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.XU,J.ZHU,J.LIU REVDAT 2 29-NOV-23 7WF6 1 REMARK REVDAT 1 26-OCT-22 7WF6 0 JRNL AUTH Y.ZHANG,R.CHEN,Y.DONG,J.ZHU,K.SU,J.LIU,J.XU JRNL TITL STRUCTURAL STUDIES REVEAL UNIQUE NON-CANONICAL REGULATORS OF JRNL TITL 2 G PROTEIN SIGNALING HOMOLOGY (RH) DOMAINS IN SORTING NEXINS. JRNL REF J.MOL.BIOL. V. 434 67823 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 36103920 JRNL DOI 10.1016/J.JMB.2022.167823 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 11986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1224 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1115 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1656 ; 1.393 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2577 ; 1.288 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 8.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;36.428 ;22.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 213 ;20.303 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.241 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1367 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 271 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12744 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 40.50 REMARK 200 R MERGE (I) : 0.38300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 39.90 REMARK 200 R MERGE FOR SHELL (I) : 1.14200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3C7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M SODIUM CITRATE TRIBASIC, 0.1 M REMARK 280 TRIS PH 8.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 82.66400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.66400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 82.66400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.66400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 82.66400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 82.66400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 82.66400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 82.66400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 82.66400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 82.66400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 82.66400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 82.66400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 82.66400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 82.66400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 82.66400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 82.66400 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 41.33200 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 123.99600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 123.99600 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 41.33200 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 41.33200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 41.33200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 123.99600 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 123.99600 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 41.33200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 123.99600 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 41.33200 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 123.99600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 41.33200 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 123.99600 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 123.99600 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 123.99600 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 41.33200 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 123.99600 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 41.33200 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 41.33200 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 41.33200 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 123.99600 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 123.99600 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 41.33200 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 41.33200 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 123.99600 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 123.99600 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 123.99600 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 123.99600 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 41.33200 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 123.99600 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 41.33200 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 123.99600 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 41.33200 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 41.33200 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 41.33200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 426 REMARK 465 GLY A 427 REMARK 465 LYS A 428 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 456 N - CA - CB ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 397 -38.31 -35.66 REMARK 500 ARG A 423 41.04 -106.45 REMARK 500 SER A 455 158.27 -39.28 REMARK 500 PRO A 456 -59.20 10.40 REMARK 500 ARG A 457 103.24 73.27 REMARK 500 ASP A 461 110.64 -29.76 REMARK 500 HIS A 474 70.02 -154.19 REMARK 500 GLU A 475 140.52 176.18 REMARK 500 PHE A 499 -121.30 -113.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 515 LEU A 516 138.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 7WF6 A 373 516 UNP Q9Y5W8 SNX13_HUMAN 373 516 SEQADV 7WF6 MET A 372 UNP Q9Y5W8 INITIATING METHIONINE SEQADV 7WF6 GLU A 517 UNP Q9Y5W8 EXPRESSION TAG SEQADV 7WF6 HIS A 518 UNP Q9Y5W8 EXPRESSION TAG SEQADV 7WF6 HIS A 519 UNP Q9Y5W8 EXPRESSION TAG SEQADV 7WF6 HIS A 520 UNP Q9Y5W8 EXPRESSION TAG SEQADV 7WF6 HIS A 521 UNP Q9Y5W8 EXPRESSION TAG SEQADV 7WF6 HIS A 522 UNP Q9Y5W8 EXPRESSION TAG SEQADV 7WF6 HIS A 523 UNP Q9Y5W8 EXPRESSION TAG SEQRES 1 A 152 MET PRO LEU ASP SER ILE LEU VAL ASP ASN VAL ALA LEU SEQRES 2 A 152 GLN PHE PHE MET ASP TYR MET GLN GLN THR GLY GLY GLN SEQRES 3 A 152 ALA HIS LEU PHE PHE TRP MET THR VAL GLU GLY TYR ARG SEQRES 4 A 152 VAL THR ALA GLN GLN GLN LEU GLU VAL LEU LEU SER ARG SEQRES 5 A 152 GLN ARG ASP GLY LYS HIS GLN THR ASN GLN THR LYS GLY SEQRES 6 A 152 LEU LEU ARG ALA ALA ALA VAL GLY ILE TYR GLU GLN TYR SEQRES 7 A 152 LEU SER GLU LYS ALA SER PRO ARG VAL THR VAL ASP ASP SEQRES 8 A 152 TYR LEU VAL ALA LYS LEU ALA ASP THR LEU ASN HIS GLU SEQRES 9 A 152 ASP PRO THR PRO GLU ILE PHE ASP ASP ILE GLN ARG LYS SEQRES 10 A 152 VAL TYR GLU LEU MET LEU ARG ASP GLU ARG PHE TYR PRO SEQRES 11 A 152 SER PHE ARG GLN ASN ALA LEU TYR VAL ARG MET LEU ALA SEQRES 12 A 152 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET CL A 601 1 HET CL A 602 1 HET CL A 603 1 HET CL A 604 1 HETNAM CL CHLORIDE ION FORMUL 2 CL 4(CL 1-) HELIX 1 AA1 PRO A 373 LEU A 378 1 6 HELIX 2 AA2 ASP A 380 GLY A 395 1 16 HELIX 3 AA3 GLY A 396 LEU A 420 1 25 HELIX 4 AA4 GLN A 430 TYR A 449 1 20 HELIX 5 AA5 ASP A 461 HIS A 474 1 14 HELIX 6 AA6 PHE A 482 ASP A 496 1 15 HELIX 7 AA7 PHE A 499 ARG A 504 1 6 HELIX 8 AA8 ASN A 506 LEU A 513 1 8 CRYST1 165.328 165.328 165.328 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006049 0.00000