HEADER OXIDOREDUCTASE 27-DEC-21 7WG0 TITLE STRUCTURE OF THE MANGANESE PROTOPORPHYRIN IX-RECONSTITUTED CYP102A1 TITLE 2 HEME DOMAIN WITH N-PALMITOYL-L-PHENYLALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYTOCHROME P450/NADPH--P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.1,1.6.2.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRIESTIA MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: BTA37_15100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P450BM3, MANGANESE PROTOPORPHYRIN IX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KEITA,S.OSAMI,A.YUICHIRO,S.HIROSHI REVDAT 2 29-NOV-23 7WG0 1 REMARK REVDAT 1 11-JAN-23 7WG0 0 JRNL AUTH O.KEITA,S.OSAMI,A.YUICHIRO,S.HIROSHI JRNL TITL STRUCTURE OF THE MANGANESE PROTOPORPHYRIN IX-RECONSTITUTED JRNL TITL 2 CYP102A1 HEME DOMAIN WITH N-PALMITOYL-L-PHENYLALANINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7654 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7114 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10366 ; 2.299 ; 1.677 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16578 ; 1.335 ; 1.606 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 906 ; 7.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 410 ;36.642 ;23.415 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1352 ;14.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.214 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 948 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8476 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1564 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 455 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1821 -15.1970 12.1915 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1757 REMARK 3 T33: 0.0107 T12: -0.0020 REMARK 3 T13: -0.0193 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.4068 L22: 0.1520 REMARK 3 L33: 0.3379 L12: 0.0677 REMARK 3 L13: 0.0527 L23: 0.2104 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0320 S13: -0.0249 REMARK 3 S21: 0.0010 S22: -0.0073 S23: 0.0057 REMARK 3 S31: -0.0591 S32: 0.0062 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 455 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8771 -15.0920 62.0741 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.1738 REMARK 3 T33: 0.0123 T12: -0.0129 REMARK 3 T13: 0.0079 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2308 L22: 0.1382 REMARK 3 L33: 0.9068 L12: 0.0251 REMARK 3 L13: 0.2337 L23: 0.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.0113 S13: 0.0412 REMARK 3 S21: 0.0078 S22: -0.0535 S23: -0.0042 REMARK 3 S31: -0.0269 S32: -0.0447 S33: 0.0731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7WG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 148.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 48.16 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1JPZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS(HYDROXYMETHYL)AMINOMETHANE, REMARK 280 MAGNESIUM CHLORIDE, PEG 8000, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.33500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.33500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 GLY A 456 REMARK 465 LEU A 457 REMARK 465 PRO A 458 REMARK 465 ALA A 459 REMARK 465 THR A 460 REMARK 465 GLY A 461 REMARK 465 GLY A 462 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 GLY B 456 REMARK 465 LEU B 457 REMARK 465 PRO B 458 REMARK 465 ALA B 459 REMARK 465 THR B 460 REMARK 465 GLY B 461 REMARK 465 GLY B 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -124.45 51.59 REMARK 500 ASN A 159 41.35 39.91 REMARK 500 ASN A 192 71.30 -118.27 REMARK 500 PRO A 196 -8.35 -52.15 REMARK 500 GLN A 229 57.65 73.13 REMARK 500 GLU A 244 -72.34 -73.75 REMARK 500 HIS A 266 -37.11 -136.84 REMARK 500 GLU A 344 -32.04 -142.87 REMARK 500 LYS A 349 120.77 -32.55 REMARK 500 LEU A 437 -61.75 61.95 REMARK 500 LYS B 15 -129.22 50.86 REMARK 500 ASN B 192 72.28 -115.43 REMARK 500 ALA B 225 -76.24 -59.85 REMARK 500 GLU B 228 66.52 -65.24 REMARK 500 HIS B 266 -40.09 -136.85 REMARK 500 ASP B 370 40.87 -78.84 REMARK 500 LEU B 437 -66.00 65.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNH A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 MNH A 502 NA 117.4 REMARK 620 3 MNH A 502 NB 95.9 87.1 REMARK 620 4 MNH A 502 NC 100.3 141.8 83.2 REMARK 620 5 MNH A 502 ND 113.4 84.4 150.1 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNH B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 MNH B 502 NA 118.3 REMARK 620 3 MNH B 502 NB 96.3 88.7 REMARK 620 4 MNH B 502 NC 100.8 140.8 87.0 REMARK 620 5 MNH B 502 ND 114.7 81.3 148.6 82.5 REMARK 620 N 1 2 3 4 DBREF1 7WG0 A 0 456 UNP A0A1Q8UP87_BACME DBREF2 7WG0 A A0A1Q8UP87 1 457 DBREF1 7WG0 B 0 456 UNP A0A1Q8UP87_BACME DBREF2 7WG0 B A0A1Q8UP87 1 457 SEQADV 7WG0 MET A -20 UNP A0A1Q8UP8 INITIATING METHIONINE SEQADV 7WG0 ALA A -19 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 SER A -18 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS A -17 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS A -16 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS A -15 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS A -14 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS A -13 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS A -12 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 SER A -11 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY A -10 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY A -9 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLU A -8 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 ASN A -7 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 LEU A -6 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 TYR A -5 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 PHE A -4 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLN A -3 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 SER A -2 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY A -1 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 PRO A 401 UNP A0A1Q8UP8 ILE 402 ENGINEERED MUTATION SEQADV 7WG0 LEU A 457 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 PRO A 458 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 ALA A 459 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 THR A 460 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY A 461 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY A 462 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 MET B -20 UNP A0A1Q8UP8 INITIATING METHIONINE SEQADV 7WG0 ALA B -19 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 SER B -18 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS B -17 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS B -16 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS B -15 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS B -14 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS B -13 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 HIS B -12 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 SER B -11 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY B -10 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY B -9 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLU B -8 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 ASN B -7 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 LEU B -6 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 TYR B -5 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 PHE B -4 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLN B -3 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 SER B -2 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY B -1 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 PRO B 401 UNP A0A1Q8UP8 ILE 402 ENGINEERED MUTATION SEQADV 7WG0 LEU B 457 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 PRO B 458 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 ALA B 459 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 THR B 460 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY B 461 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WG0 GLY B 462 UNP A0A1Q8UP8 EXPRESSION TAG SEQRES 1 A 483 MET ALA SER HIS HIS HIS HIS HIS HIS SER GLY GLY GLU SEQRES 2 A 483 ASN LEU TYR PHE GLN SER GLY MET THR ILE LYS GLU MET SEQRES 3 A 483 PRO GLN PRO LYS THR PHE GLY GLU LEU LYS ASN LEU PRO SEQRES 4 A 483 LEU LEU ASN THR ASP LYS PRO VAL GLN ALA LEU MET LYS SEQRES 5 A 483 ILE ALA ASP GLU LEU GLY GLU ILE PHE LYS PHE GLU ALA SEQRES 6 A 483 PRO GLY ARG VAL THR ARG TYR LEU SER SER GLN ARG LEU SEQRES 7 A 483 ILE LYS GLU ALA CYS ASP GLU SER ARG PHE ASP LYS ASN SEQRES 8 A 483 LEU SER GLN ALA LEU LYS PHE VAL ARG ASP PHE ALA GLY SEQRES 9 A 483 ASP GLY LEU PHE THR SER TRP THR HIS GLU LYS ASN TRP SEQRES 10 A 483 LYS LYS ALA HIS ASN ILE LEU LEU PRO SER PHE SER GLN SEQRES 11 A 483 GLN ALA MET LYS GLY TYR HIS ALA MET MET VAL ASP ILE SEQRES 12 A 483 ALA VAL GLN LEU VAL GLN LYS TRP GLU ARG LEU ASN ALA SEQRES 13 A 483 ASP GLU HIS ILE GLU VAL PRO GLU ASP MET THR ARG LEU SEQRES 14 A 483 THR LEU ASP THR ILE GLY LEU CYS GLY PHE ASN TYR ARG SEQRES 15 A 483 PHE ASN SER PHE TYR ARG ASP GLN PRO HIS PRO PHE ILE SEQRES 16 A 483 THR SER MET VAL ARG ALA LEU ASP GLU ALA MET ASN LYS SEQRES 17 A 483 LEU GLN ARG ALA ASN PRO ASP ASP PRO ALA TYR ASP GLU SEQRES 18 A 483 ASN LYS ARG GLN PHE GLN GLU ASP ILE LYS VAL MET ASN SEQRES 19 A 483 ASP LEU VAL ASP LYS ILE ILE ALA ASP ARG LYS ALA SER SEQRES 20 A 483 GLY GLU GLN SER ASP ASP LEU LEU THR HIS MET LEU ASN SEQRES 21 A 483 GLY LYS ASP PRO GLU THR GLY GLU PRO LEU ASP ASP GLU SEQRES 22 A 483 ASN ILE ARG TYR GLN ILE ILE THR PHE LEU ILE ALA GLY SEQRES 23 A 483 HIS GLU THR THR SER GLY LEU LEU SER PHE ALA LEU TYR SEQRES 24 A 483 PHE LEU VAL LYS ASN PRO HIS VAL LEU GLN LYS ALA ALA SEQRES 25 A 483 GLU GLU ALA ALA ARG VAL LEU VAL ASP PRO VAL PRO SER SEQRES 26 A 483 TYR LYS GLN VAL LYS GLN LEU LYS TYR VAL GLY MET VAL SEQRES 27 A 483 LEU ASN GLU ALA LEU ARG LEU TRP PRO THR ALA PRO ALA SEQRES 28 A 483 PHE SER LEU TYR ALA LYS GLU ASP THR VAL LEU GLY GLY SEQRES 29 A 483 GLU TYR PRO LEU GLU LYS GLY ASP GLU LEU MET VAL LEU SEQRES 30 A 483 ILE PRO GLN LEU HIS ARG ASP LYS THR ILE TRP GLY ASP SEQRES 31 A 483 ASP VAL GLU GLU PHE ARG PRO GLU ARG PHE GLU ASN PRO SEQRES 32 A 483 SER ALA ILE PRO GLN HIS ALA PHE LYS PRO PHE GLY ASN SEQRES 33 A 483 GLY GLN ARG ALA CYS PRO GLY GLN GLN PHE ALA LEU HIS SEQRES 34 A 483 GLU ALA THR LEU VAL LEU GLY MET MET LEU LYS HIS PHE SEQRES 35 A 483 ASP PHE GLU ASP HIS THR ASN TYR GLU LEU ASP ILE LYS SEQRES 36 A 483 GLU THR LEU THR LEU LYS PRO GLU GLY PHE VAL VAL LYS SEQRES 37 A 483 ALA LYS SER LYS LYS ILE PRO LEU GLY LEU PRO ALA THR SEQRES 38 A 483 GLY GLY SEQRES 1 B 483 MET ALA SER HIS HIS HIS HIS HIS HIS SER GLY GLY GLU SEQRES 2 B 483 ASN LEU TYR PHE GLN SER GLY MET THR ILE LYS GLU MET SEQRES 3 B 483 PRO GLN PRO LYS THR PHE GLY GLU LEU LYS ASN LEU PRO SEQRES 4 B 483 LEU LEU ASN THR ASP LYS PRO VAL GLN ALA LEU MET LYS SEQRES 5 B 483 ILE ALA ASP GLU LEU GLY GLU ILE PHE LYS PHE GLU ALA SEQRES 6 B 483 PRO GLY ARG VAL THR ARG TYR LEU SER SER GLN ARG LEU SEQRES 7 B 483 ILE LYS GLU ALA CYS ASP GLU SER ARG PHE ASP LYS ASN SEQRES 8 B 483 LEU SER GLN ALA LEU LYS PHE VAL ARG ASP PHE ALA GLY SEQRES 9 B 483 ASP GLY LEU PHE THR SER TRP THR HIS GLU LYS ASN TRP SEQRES 10 B 483 LYS LYS ALA HIS ASN ILE LEU LEU PRO SER PHE SER GLN SEQRES 11 B 483 GLN ALA MET LYS GLY TYR HIS ALA MET MET VAL ASP ILE SEQRES 12 B 483 ALA VAL GLN LEU VAL GLN LYS TRP GLU ARG LEU ASN ALA SEQRES 13 B 483 ASP GLU HIS ILE GLU VAL PRO GLU ASP MET THR ARG LEU SEQRES 14 B 483 THR LEU ASP THR ILE GLY LEU CYS GLY PHE ASN TYR ARG SEQRES 15 B 483 PHE ASN SER PHE TYR ARG ASP GLN PRO HIS PRO PHE ILE SEQRES 16 B 483 THR SER MET VAL ARG ALA LEU ASP GLU ALA MET ASN LYS SEQRES 17 B 483 LEU GLN ARG ALA ASN PRO ASP ASP PRO ALA TYR ASP GLU SEQRES 18 B 483 ASN LYS ARG GLN PHE GLN GLU ASP ILE LYS VAL MET ASN SEQRES 19 B 483 ASP LEU VAL ASP LYS ILE ILE ALA ASP ARG LYS ALA SER SEQRES 20 B 483 GLY GLU GLN SER ASP ASP LEU LEU THR HIS MET LEU ASN SEQRES 21 B 483 GLY LYS ASP PRO GLU THR GLY GLU PRO LEU ASP ASP GLU SEQRES 22 B 483 ASN ILE ARG TYR GLN ILE ILE THR PHE LEU ILE ALA GLY SEQRES 23 B 483 HIS GLU THR THR SER GLY LEU LEU SER PHE ALA LEU TYR SEQRES 24 B 483 PHE LEU VAL LYS ASN PRO HIS VAL LEU GLN LYS ALA ALA SEQRES 25 B 483 GLU GLU ALA ALA ARG VAL LEU VAL ASP PRO VAL PRO SER SEQRES 26 B 483 TYR LYS GLN VAL LYS GLN LEU LYS TYR VAL GLY MET VAL SEQRES 27 B 483 LEU ASN GLU ALA LEU ARG LEU TRP PRO THR ALA PRO ALA SEQRES 28 B 483 PHE SER LEU TYR ALA LYS GLU ASP THR VAL LEU GLY GLY SEQRES 29 B 483 GLU TYR PRO LEU GLU LYS GLY ASP GLU LEU MET VAL LEU SEQRES 30 B 483 ILE PRO GLN LEU HIS ARG ASP LYS THR ILE TRP GLY ASP SEQRES 31 B 483 ASP VAL GLU GLU PHE ARG PRO GLU ARG PHE GLU ASN PRO SEQRES 32 B 483 SER ALA ILE PRO GLN HIS ALA PHE LYS PRO PHE GLY ASN SEQRES 33 B 483 GLY GLN ARG ALA CYS PRO GLY GLN GLN PHE ALA LEU HIS SEQRES 34 B 483 GLU ALA THR LEU VAL LEU GLY MET MET LEU LYS HIS PHE SEQRES 35 B 483 ASP PHE GLU ASP HIS THR ASN TYR GLU LEU ASP ILE LYS SEQRES 36 B 483 GLU THR LEU THR LEU LYS PRO GLU GLY PHE VAL VAL LYS SEQRES 37 B 483 ALA LYS SER LYS LYS ILE PRO LEU GLY LEU PRO ALA THR SEQRES 38 B 483 GLY GLY HET XPZ A 501 29 HET MNH A 502 43 HET XPZ B 501 29 HET MNH B 502 43 HETNAM XPZ (2~{S})-2-(HEXADECANOYLAMINO)-3-PHENYL-PROPANOIC ACID HETNAM MNH MANGANESE PROTOPORPHYRIN IX FORMUL 3 XPZ 2(C25 H41 N O3) FORMUL 4 MNH 2(C34 H32 MN N4 O4 4+) FORMUL 7 HOH *367(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLU A 93 LEU A 104 1 12 HELIX 7 AA7 PRO A 105 PHE A 107 5 3 HELIX 8 AA8 SER A 108 ARG A 132 1 25 HELIX 9 AA9 VAL A 141 ASN A 159 1 19 HELIX 10 AB1 ASN A 163 ARG A 167 5 5 HELIX 11 AB2 HIS A 171 GLN A 189 1 19 HELIX 12 AB3 ASP A 195 ALA A 197 5 3 HELIX 13 AB4 TYR A 198 GLY A 227 1 30 HELIX 14 AB5 ASP A 232 GLY A 240 1 9 HELIX 15 AB6 ASP A 250 GLY A 265 1 16 HELIX 16 AB7 HIS A 266 ASN A 283 1 18 HELIX 17 AB8 ASN A 283 LEU A 298 1 16 HELIX 18 AB9 SER A 304 GLN A 310 1 7 HELIX 19 AC1 LEU A 311 TRP A 325 1 15 HELIX 20 AC2 GLY A 342 GLU A 344 5 3 HELIX 21 AC3 ILE A 357 HIS A 361 1 5 HELIX 22 AC4 ASP A 363 GLY A 368 1 6 HELIX 23 AC5 ARG A 375 GLU A 380 5 6 HELIX 24 AC6 ASN A 381 ILE A 385 5 5 HELIX 25 AC7 ASN A 395 ALA A 399 5 5 HELIX 26 AC8 GLY A 402 HIS A 420 1 19 HELIX 27 AC9 PHE B 11 LYS B 15 5 5 HELIX 28 AD1 ASN B 16 ASN B 21 5 6 HELIX 29 AD2 LYS B 24 GLY B 37 1 14 HELIX 30 AD3 SER B 54 CYS B 62 1 9 HELIX 31 AD4 SER B 72 GLY B 83 1 12 HELIX 32 AD5 GLU B 93 LEU B 104 1 12 HELIX 33 AD6 PRO B 105 PHE B 107 5 3 HELIX 34 AD7 SER B 108 ARG B 132 1 25 HELIX 35 AD8 VAL B 141 ASN B 159 1 19 HELIX 36 AD9 ASN B 163 ARG B 167 5 5 HELIX 37 AE1 HIS B 171 ARG B 190 1 20 HELIX 38 AE2 ASP B 195 ALA B 197 5 3 HELIX 39 AE3 TYR B 198 GLY B 227 1 30 HELIX 40 AE4 ASP B 232 GLY B 240 1 9 HELIX 41 AE5 ASP B 250 GLY B 265 1 16 HELIX 42 AE6 HIS B 266 ASN B 283 1 18 HELIX 43 AE7 ASN B 283 LEU B 298 1 16 HELIX 44 AE8 SER B 304 GLN B 310 1 7 HELIX 45 AE9 LEU B 311 TRP B 325 1 15 HELIX 46 AF1 ILE B 357 HIS B 361 1 5 HELIX 47 AF2 ASP B 363 GLY B 368 1 6 HELIX 48 AF3 ARG B 375 GLU B 380 5 6 HELIX 49 AF4 ASN B 381 ILE B 385 5 5 HELIX 50 AF5 ASN B 395 ALA B 399 5 5 HELIX 51 AF6 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O MET A 354 N ARG A 50 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N LEU A 333 O LEU A 353 SHEET 5 AA1 5 PHE A 67 ASN A 70 -1 N ASP A 68 O TYR A 334 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O TYR A 345 N LEU A 341 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 ALA B 44 0 SHEET 2 AA5 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O MET B 354 N LEU B 52 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N LEU B 333 O LEU B 353 SHEET 5 AA5 5 PHE B 67 ASN B 70 -1 N ASP B 68 O TYR B 334 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 MN MNH A 502 1555 1555 2.31 LINK SG CYS B 400 MN MNH B 502 1555 1555 2.40 CRYST1 58.780 127.890 148.670 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006726 0.00000