HEADER ANTITOXIN 05-JAN-22 7WJ0 TITLE SOLUTION STRUCTURE OF N-TERMINAL DOMAIN (NMAZE6) OF MYCOBACTERIAL TITLE 2 ANTITOXIN MAZE6 FROM MAZEF6 TA SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITOXIN MAZE6; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: MAZE6, MAZE-MT3, RV1991A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RHH DOMAIN, MYCOBACTERIAL TA SYSTEM, MAZEF6, DNA BINDING DOMAIN, KEYWDS 2 ANTITOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KUMARI,S.P.SARMA REVDAT 2 15-MAY-24 7WJ0 1 REMARK REVDAT 1 12-OCT-22 7WJ0 0 JRNL AUTH K.KUMARI,S.P.SARMA JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSIS OF MAZE6-OPERATOR DNA JRNL TITL 2 COMPLEX PROVIDE INSIGHTS INTO AUTOREGULATION OF JRNL TITL 3 TOXIN-ANTITOXIN SYSTEMS. JRNL REF COMMUN BIOL V. 5 963 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36109664 JRNL DOI 10.1038/S42003-022-03933-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026789. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM NA NMAZE6, 20 MM NA REMARK 210 POTASSIUM PHOSPHATE, 20 MM NA REMARK 210 SODIUM CHLORIDE, 1 MM NA EDTA, REMARK 210 0.01 % NA SODIUM AZIDE, 0.2 MM REMARK 210 NA DSS, 10 % [U-99% 2H] D2O, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-99% 15N] REMARK 210 NMAZE6, 20 MM NA POTASSIUM REMARK 210 PHOSPHATE, 20 MM NA SODIUM REMARK 210 CHLORIDE, 1 MM NA EDTA, 0.01 % REMARK 210 NA SODIUM AZIDE, 0.2 MM NA DSS, REMARK 210 10 % [U-99% 2H] D2O, 90% H2O/10% REMARK 210 D2O; 0.4 MM [U-99% 13C; U-99% REMARK 210 15N] NMAZE6, 20 MM NA POTASSIUM REMARK 210 PHOSPHATE, 20 MM NA SODIUM REMARK 210 CHLORIDE, 1 MM NA EDTA, 0.01 % REMARK 210 NA SODIUM AZIDE, 0.2 MM NA DSS, REMARK 210 10 % [U-99% 2H] D2O, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CC(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D H(CCO)NH; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY; 13C, 15N REMARK 210 SIMULTANEOUS EDITED NOESY; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AGILENT DDS2 600MHZ REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ 4.2, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, CYANA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PRO A 11 -156.82 -71.14 REMARK 500 2 PRO B 11 -151.20 -68.96 REMARK 500 4 PRO B 11 -175.93 -62.85 REMARK 500 6 PRO A 11 -178.65 -64.41 REMARK 500 7 PRO B 11 -174.48 -60.76 REMARK 500 7 MET B 27 -168.95 -111.06 REMARK 500 8 PRO A 11 -142.45 -66.36 REMARK 500 8 PRO B 11 -145.64 -65.30 REMARK 500 9 PRO A 11 -171.08 -65.29 REMARK 500 10 PRO A 11 -158.68 -64.21 REMARK 500 11 PRO A 11 176.46 -58.82 REMARK 500 11 MET A 27 -168.54 -117.75 REMARK 500 11 MET B 27 -165.69 -112.90 REMARK 500 12 PRO B 11 -178.91 -58.40 REMARK 500 13 PRO A 11 -151.31 -63.97 REMARK 500 13 PRO B 11 180.00 -58.82 REMARK 500 14 PRO B 11 -156.11 -71.04 REMARK 500 15 PRO A 11 -164.24 -66.34 REMARK 500 15 PRO B 11 177.85 -57.26 REMARK 500 16 PRO A 11 -163.92 -64.69 REMARK 500 16 MET A 27 -158.97 -121.16 REMARK 500 17 PRO A 11 -159.87 -64.36 REMARK 500 17 MET A 27 -167.34 -118.83 REMARK 500 18 PRO A 11 -159.43 -66.20 REMARK 500 18 PRO B 11 174.97 -58.15 REMARK 500 19 PRO A 11 -150.65 -66.29 REMARK 500 19 PRO B 11 -164.06 -67.54 REMARK 500 20 PRO A 11 -160.04 -63.45 REMARK 500 20 MET A 27 -165.54 -115.63 REMARK 500 20 PRO B 11 -179.03 -67.83 REMARK 500 20 MET B 27 -162.04 -104.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51227 RELATED DB: BMRB DBREF 7WJ0 A 4 52 UNP P9WJ87 MAZE6_MYCTU 1 49 DBREF 7WJ0 B 4 52 UNP P9WJ87 MAZE6_MYCTU 1 49 SEQADV 7WJ0 SER A 1 UNP P9WJ87 EXPRESSION TAG SEQADV 7WJ0 GLY A 2 UNP P9WJ87 EXPRESSION TAG SEQADV 7WJ0 SER A 3 UNP P9WJ87 EXPRESSION TAG SEQADV 7WJ0 SER B 1 UNP P9WJ87 EXPRESSION TAG SEQADV 7WJ0 GLY B 2 UNP P9WJ87 EXPRESSION TAG SEQADV 7WJ0 SER B 3 UNP P9WJ87 EXPRESSION TAG SEQRES 1 A 52 SER GLY SER MET LYS THR ALA ILE SER LEU PRO ASP GLU SEQRES 2 A 52 THR PHE ASP ARG VAL SER ARG ARG ALA SER GLU LEU GLY SEQRES 3 A 52 MET SER ARG SER GLU PHE PHE THR LYS ALA ALA GLN ARG SEQRES 4 A 52 TYR LEU HIS GLU LEU ASP ALA GLN LEU LEU THR GLY GLN SEQRES 1 B 52 SER GLY SER MET LYS THR ALA ILE SER LEU PRO ASP GLU SEQRES 2 B 52 THR PHE ASP ARG VAL SER ARG ARG ALA SER GLU LEU GLY SEQRES 3 B 52 MET SER ARG SER GLU PHE PHE THR LYS ALA ALA GLN ARG SEQRES 4 B 52 TYR LEU HIS GLU LEU ASP ALA GLN LEU LEU THR GLY GLN HELIX 1 AA1 PRO A 11 GLY A 26 1 16 HELIX 2 AA2 SER A 28 GLN A 52 1 25 HELIX 3 AA3 PRO B 11 GLY B 26 1 16 HELIX 4 AA4 SER B 28 GLN B 52 1 25 SHEET 1 AA1 2 LYS A 5 SER A 9 0 SHEET 2 AA1 2 LYS B 5 SER B 9 -1 O THR B 6 N ILE A 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1