HEADER OXIDOREDUCTASE/RNA 11-JAN-22 7WKV TITLE CRYSTAL STRUCTURE OF HUMAN ALKBH5 IN COMPLEX WITH 2-OXOGLUTARATE (2OG) TITLE 2 AND M6A-CONTAINING SSRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEMETHYLASE ALKBH5; COMPND 3 CHAIN: A, C, E; COMPND 4 SYNONYM: ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 5,ALPHA- COMPND 5 KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 5; COMPND 6 EC: 1.14.11.53; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*GP*GP*(6MZ)P*C)-3'); COMPND 10 CHAIN: B, D, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALKBH5, ABH5, OFOXD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS IRON AND 2-OXOGLUTARATE DEPENDENT OXYGENASE, RNA DEMETHYLASE, KEYWDS 2 OXIDOREDUCTASE, DOUBLE-STRANDED BETA HELIX, OXIDOREDUCTASE-RNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.KAUR,M.A.MCDONOUGH,C.J.SCHOFIELD,W.S.AIK REVDAT 4 29-NOV-23 7WKV 1 REMARK REVDAT 3 04-MAY-22 7WKV 1 JRNL REVDAT 2 06-APR-22 7WKV 1 JRNL REVDAT 1 30-MAR-22 7WKV 0 JRNL AUTH S.KAUR,N.Y.TAM,M.A.MCDONOUGH,C.J.SCHOFIELD,W.S.AIK JRNL TITL MECHANISMS OF SUBSTRATE RECOGNITION AND N6-METHYLADENOSINE JRNL TITL 2 DEMETHYLATION REVEALED BY CRYSTAL STRUCTURES OF ALKBH5-RNA JRNL TITL 3 COMPLEXES. JRNL REF NUCLEIC ACIDS RES. V. 50 4148 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35333330 JRNL DOI 10.1093/NAR/GKAC195 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 78.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.2600 - 5.1800 0.95 2720 132 0.1623 0.1838 REMARK 3 2 5.1700 - 4.1100 0.96 2716 117 0.1290 0.1722 REMARK 3 3 4.1100 - 3.5900 0.95 2694 156 0.1671 0.2244 REMARK 3 4 3.5900 - 3.2600 0.96 2766 105 0.1828 0.2045 REMARK 3 5 3.2600 - 3.0300 0.95 2703 128 0.1930 0.2618 REMARK 3 6 3.0300 - 2.8500 0.93 2714 186 0.2120 0.2704 REMARK 3 7 2.8500 - 2.7100 0.94 2640 157 0.2215 0.3126 REMARK 3 8 2.7100 - 2.5900 0.95 2714 148 0.2326 0.2681 REMARK 3 9 2.5900 - 2.4900 0.95 2760 123 0.2374 0.3022 REMARK 3 10 2.4900 - 2.4000 0.94 2654 162 0.2510 0.3009 REMARK 3 11 2.4000 - 2.3300 0.95 2702 136 0.2585 0.2684 REMARK 3 12 2.3300 - 2.2600 0.94 2704 139 0.2693 0.2897 REMARK 3 13 2.2600 - 2.2000 0.94 2663 165 0.2964 0.4166 REMARK 3 14 2.2000 - 2.1500 0.95 2719 141 0.2969 0.3320 REMARK 3 15 2.1500 - 2.1000 0.94 2659 123 0.3319 0.3928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4000 REMARK 3 OPERATOR: -K,-H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 150 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6233 -28.2203 17.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.6999 T22: 0.8387 REMARK 3 T33: 0.2191 T12: 0.1433 REMARK 3 T13: 0.0238 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.9590 L22: 0.8047 REMARK 3 L33: 5.0020 L12: 0.8642 REMARK 3 L13: 0.4625 L23: 0.0665 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0119 S13: -0.1118 REMARK 3 S21: -0.1804 S22: -0.0687 S23: -0.1407 REMARK 3 S31: 0.3627 S32: 0.4138 S33: 0.1148 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 189 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3544 -19.4939 18.1396 REMARK 3 T TENSOR REMARK 3 T11: 0.7489 T22: 0.7820 REMARK 3 T33: 0.1300 T12: 0.0837 REMARK 3 T13: 0.0014 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.4833 L22: 0.6255 REMARK 3 L33: 2.0884 L12: 0.0804 REMARK 3 L13: 0.1890 L23: -0.1799 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.0063 S13: 0.0522 REMARK 3 S21: 0.0056 S22: -0.0105 S23: 0.0660 REMARK 3 S31: -0.1552 S32: -0.2360 S33: 0.0526 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 2 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7569 -15.7803 29.0143 REMARK 3 T TENSOR REMARK 3 T11: 0.7955 T22: 1.0085 REMARK 3 T33: 0.3020 T12: 0.3247 REMARK 3 T13: -0.0053 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.3691 L22: 1.5395 REMARK 3 L33: 1.3245 L12: 0.1544 REMARK 3 L13: 0.1166 L23: 1.3208 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: 0.1559 S13: 0.1606 REMARK 3 S21: 0.3558 S22: 0.0740 S23: 0.1968 REMARK 3 S31: -0.3952 S32: -0.4744 S33: -0.1780 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1789 13.2852 31.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.7982 T22: 0.7434 REMARK 3 T33: 0.1800 T12: -0.0258 REMARK 3 T13: -0.0234 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.5578 L22: 2.3645 REMARK 3 L33: 1.9434 L12: -0.0620 REMARK 3 L13: 0.3709 L23: 0.9547 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.0234 S13: 0.1440 REMARK 3 S21: 0.0878 S22: 0.0010 S23: -0.1416 REMARK 3 S31: -0.4556 S32: 0.1131 S33: 0.0722 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9069 -14.9593 16.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.7491 T22: 0.5658 REMARK 3 T33: 0.2444 T12: 0.0758 REMARK 3 T13: -0.0260 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 1.7030 L22: 1.1303 REMARK 3 L33: 9.1348 L12: 0.1380 REMARK 3 L13: 0.6378 L23: 0.0754 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: -0.0273 S13: -0.4012 REMARK 3 S21: -0.0934 S22: -0.1100 S23: -0.0396 REMARK 3 S31: 1.2977 S32: 0.2602 S33: 0.0026 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2748 -6.3979 4.5249 REMARK 3 T TENSOR REMARK 3 T11: 0.5533 T22: 0.5786 REMARK 3 T33: 0.1227 T12: 0.0109 REMARK 3 T13: -0.0158 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.5245 L22: 1.3170 REMARK 3 L33: 3.0849 L12: 0.1922 REMARK 3 L13: 0.0442 L23: 0.0779 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: 0.2539 S13: -0.1477 REMARK 3 S21: -0.2593 S22: -0.0570 S23: -0.0056 REMARK 3 S31: 0.5154 S32: 0.0217 S33: -0.0057 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9211 6.5659 4.8502 REMARK 3 T TENSOR REMARK 3 T11: 0.5542 T22: 0.5817 REMARK 3 T33: 0.1627 T12: 0.0646 REMARK 3 T13: -0.0161 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 5.4806 L22: 2.5206 REMARK 3 L33: 6.4023 L12: 2.0287 REMARK 3 L13: -0.4801 L23: 2.4686 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: 0.6917 S13: 0.5458 REMARK 3 S21: -0.3086 S22: 0.0952 S23: 0.2787 REMARK 3 S31: -0.8986 S32: -0.3450 S33: -0.1706 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2196 -2.1947 17.4448 REMARK 3 T TENSOR REMARK 3 T11: 0.4427 T22: 0.5067 REMARK 3 T33: 0.1388 T12: -0.0011 REMARK 3 T13: -0.0159 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.2114 L22: 1.1208 REMARK 3 L33: 3.5725 L12: 0.0580 REMARK 3 L13: 0.2261 L23: 0.4343 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: 0.0290 S13: -0.0664 REMARK 3 S21: 0.0509 S22: -0.0783 S23: 0.0574 REMARK 3 S31: 0.2624 S32: -0.1660 S33: -0.0173 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4659 14.9042 12.2642 REMARK 3 T TENSOR REMARK 3 T11: 0.6751 T22: 0.7543 REMARK 3 T33: 0.2905 T12: -0.2125 REMARK 3 T13: -0.0190 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.7734 L22: 2.1606 REMARK 3 L33: 7.6966 L12: -0.3077 REMARK 3 L13: 1.0454 L23: 1.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: 0.3987 S13: 0.4157 REMARK 3 S21: -0.3448 S22: -0.0003 S23: -0.3689 REMARK 3 S31: -0.9384 S32: 0.8317 S33: -0.0793 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7457 3.2568 19.3839 REMARK 3 T TENSOR REMARK 3 T11: 0.5199 T22: 0.5506 REMARK 3 T33: 0.1271 T12: 0.0697 REMARK 3 T13: -0.0116 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.4429 L22: 1.0935 REMARK 3 L33: 3.4563 L12: 0.5634 REMARK 3 L13: 0.1506 L23: 0.1856 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0727 S13: 0.0569 REMARK 3 S21: 0.1062 S22: -0.1026 S23: -0.0387 REMARK 3 S31: -0.1744 S32: 0.2029 S33: 0.0916 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6417 8.8523 6.5493 REMARK 3 T TENSOR REMARK 3 T11: 0.6200 T22: 0.6429 REMARK 3 T33: 0.1725 T12: -0.0111 REMARK 3 T13: -0.0309 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.3924 L22: 1.7523 REMARK 3 L33: 2.3796 L12: -0.4660 REMARK 3 L13: -1.9036 L23: -0.3577 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: 0.0647 S13: 0.1985 REMARK 3 S21: -0.1482 S22: -0.0831 S23: -0.1473 REMARK 3 S31: -0.3980 S32: 0.0575 S33: -0.0011 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2084 36.1590 3.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.9420 T22: 0.8019 REMARK 3 T33: 0.2293 T12: -0.0107 REMARK 3 T13: -0.0198 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.3228 L22: 1.9277 REMARK 3 L33: 1.2015 L12: 0.0977 REMARK 3 L13: -0.1338 L23: -0.7977 REMARK 3 S TENSOR REMARK 3 S11: -0.0777 S12: -0.1290 S13: 0.0339 REMARK 3 S21: -0.1236 S22: 0.0416 S23: 0.0674 REMARK 3 S31: -0.0139 S32: -0.0167 S33: 0.0290 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 94 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2207 16.7760 22.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.7798 T22: 0.6995 REMARK 3 T33: 0.0755 T12: 0.0598 REMARK 3 T13: -0.0116 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.7858 L22: 0.3614 REMARK 3 L33: 1.4395 L12: 0.0918 REMARK 3 L13: -0.1982 L23: -0.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0358 S13: -0.0878 REMARK 3 S21: 0.0067 S22: -0.0405 S23: -0.0004 REMARK 3 S31: 0.2018 S32: 0.0013 S33: 0.0354 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 206 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1720 27.7009 16.5256 REMARK 3 T TENSOR REMARK 3 T11: 0.8212 T22: 0.7005 REMARK 3 T33: 0.1220 T12: 0.0295 REMARK 3 T13: -0.0171 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.8913 L22: 0.8006 REMARK 3 L33: 2.5021 L12: 0.1435 REMARK 3 L13: 0.4609 L23: -0.1407 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.0291 S13: 0.1098 REMARK 3 S21: 0.1008 S22: -0.0240 S23: 0.0458 REMARK 3 S31: -0.3518 S32: -0.1127 S33: 0.0657 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4223 32.1241 28.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.9729 T22: 0.7965 REMARK 3 T33: 0.2692 T12: 0.1948 REMARK 3 T13: -0.0455 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 1.0419 L22: 0.3292 REMARK 3 L33: 1.3285 L12: 0.3287 REMARK 3 L13: -1.0898 L23: -0.1373 REMARK 3 S TENSOR REMARK 3 S11: 0.2440 S12: -0.1076 S13: 0.1046 REMARK 3 S21: 0.4071 S22: -0.0386 S23: 0.0832 REMARK 3 S31: -0.5719 S32: -0.3354 S33: -0.1949 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 74 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2141 -11.5812 5.0557 REMARK 3 T TENSOR REMARK 3 T11: 0.9834 T22: 0.7512 REMARK 3 T33: 0.2675 T12: 0.2241 REMARK 3 T13: -0.0395 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.7246 L22: 1.9815 REMARK 3 L33: 4.5416 L12: -0.6373 REMARK 3 L13: -0.7816 L23: 0.4189 REMARK 3 S TENSOR REMARK 3 S11: 0.0685 S12: 0.0794 S13: 0.2045 REMARK 3 S21: -0.3063 S22: -0.1532 S23: 0.0572 REMARK 3 S31: -0.3297 S32: -0.2084 S33: 0.0846 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 94 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5359 -38.7172 18.2771 REMARK 3 T TENSOR REMARK 3 T11: 1.0023 T22: 0.6971 REMARK 3 T33: 0.3080 T12: 0.0068 REMARK 3 T13: 0.0834 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 2.8914 L22: 2.7497 REMARK 3 L33: 5.6345 L12: 0.3015 REMARK 3 L13: 1.5947 L23: -1.1075 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: 0.0402 S13: -0.3914 REMARK 3 S21: -0.0744 S22: -0.0752 S23: -0.0822 REMARK 3 S31: 0.9732 S32: 0.1412 S33: 0.0140 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 116 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7404 -25.0578 30.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.6878 T22: 0.7315 REMARK 3 T33: 0.1373 T12: 0.0409 REMARK 3 T13: 0.0145 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.4953 L22: 1.2030 REMARK 3 L33: 3.6459 L12: -0.0290 REMARK 3 L13: 0.0807 L23: -0.5230 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.2747 S13: 0.0151 REMARK 3 S21: 0.1838 S22: -0.0927 S23: -0.0345 REMARK 3 S31: -0.1082 S32: 0.1027 S33: 0.0646 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42760 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11270 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7V4G REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M 2-(N-MORPHOLINO)ETHANESULFONIC REMARK 280 ACID (MES) MONOHYDRATE, 16% (W/V) PEG 6000 AND 5% (V/V) 2-METHYL- REMARK 280 2,4-PENTANEDIOL (MPD), PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.12533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.56267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 73 REMARK 465 U B 1 REMARK 465 U B 6 REMARK 465 G B 7 REMARK 465 C B 8 REMARK 465 SER C 73 REMARK 465 U D 1 REMARK 465 U D 6 REMARK 465 G D 7 REMARK 465 C D 8 REMARK 465 SER E 73 REMARK 465 U F 1 REMARK 465 U F 6 REMARK 465 G F 7 REMARK 465 C F 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 GLN A 170 CG CD OE1 NE2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 GLU C 79 CG CD OE1 OE2 REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 ARG C 83 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 97 CG CD OE1 NE2 REMARK 470 LYS C 102 CG CD CE NZ REMARK 470 GLU C 121 CG CD OE1 OE2 REMARK 470 GLN C 146 CG CD OE1 NE2 REMARK 470 LYS C 147 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 LYS C 235 CG CD CE NZ REMARK 470 ILE C 237 CG1 CG2 CD1 REMARK 470 ARG C 238 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 241 CG CD OE1 OE2 REMARK 470 ARG C 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 274 CG CD CE NZ REMARK 470 GLN E 74 CG CD OE1 NE2 REMARK 470 LEU E 76 CG CD1 CD2 REMARK 470 GLU E 80 CG CD OE1 OE2 REMARK 470 GLU E 121 CG CD OE1 OE2 REMARK 470 GLN E 146 CG CD OE1 NE2 REMARK 470 LYS E 147 CG CD CE NZ REMARK 470 ARG E 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 235 CG CD CE NZ REMARK 470 ARG E 238 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 241 CG CD OE1 OE2 REMARK 470 ARG E 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 274 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 172 -61.53 -94.57 REMARK 500 PHE A 221 -13.08 74.27 REMARK 500 SER A 222 170.64 179.80 REMARK 500 VAL C 172 -61.36 -96.10 REMARK 500 PHE C 221 -12.75 73.99 REMARK 500 SER C 222 170.83 179.79 REMARK 500 VAL E 172 -60.78 -94.99 REMARK 500 PHE E 221 -12.41 74.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 204 NE2 REMARK 620 2 ASP A 206 OD1 92.2 REMARK 620 3 HIS A 266 NE2 92.4 88.9 REMARK 620 4 AKG A 302 O2 101.3 110.0 156.0 REMARK 620 5 AKG A 302 O5 84.7 167.9 79.6 82.1 REMARK 620 6 HOH A 402 O 172.3 80.7 84.6 84.0 101.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 204 NE2 REMARK 620 2 ASP C 206 OD1 92.6 REMARK 620 3 HIS C 266 NE2 92.6 105.5 REMARK 620 4 AKG C 302 O1 89.4 103.6 150.7 REMARK 620 5 AKG C 302 O5 74.6 166.9 72.5 79.9 REMARK 620 6 HOH C 404 O 157.2 102.6 99.4 70.7 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 204 NE2 REMARK 620 2 ASP E 206 OD1 99.0 REMARK 620 3 HIS E 266 NE2 102.4 83.5 REMARK 620 4 AKG E 302 O1 96.8 97.2 160.4 REMARK 620 5 AKG E 302 O5 81.3 175.1 91.6 87.6 REMARK 620 6 HOH E 402 O 164.9 77.3 91.8 69.5 103.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7V4G RELATED DB: PDB REMARK 900 7V4G CONTAINS THE SAME PROTEIN AND RNA WITHOUT 2-OXOGLUTARATE DBREF 7WKV A 74 292 UNP Q6P6C2 ALKB5_HUMAN 74 292 DBREF 7WKV B 1 8 PDB 7WKV 7WKV 1 8 DBREF 7WKV C 74 292 UNP Q6P6C2 ALKB5_HUMAN 74 292 DBREF 7WKV D 1 8 PDB 7WKV 7WKV 1 8 DBREF 7WKV E 74 292 UNP Q6P6C2 ALKB5_HUMAN 74 292 DBREF 7WKV F 1 8 PDB 7WKV 7WKV 1 8 SEQADV 7WKV SER A 73 UNP Q6P6C2 EXPRESSION TAG SEQADV 7WKV SER C 73 UNP Q6P6C2 EXPRESSION TAG SEQADV 7WKV SER E 73 UNP Q6P6C2 EXPRESSION TAG SEQRES 1 A 220 SER GLN GLN LEU GLN LYS GLU GLU GLU ALA ARG LYS VAL SEQRES 2 A 220 LYS SER GLY ILE ARG GLN MET ARG LEU PHE SER GLN ASP SEQRES 3 A 220 GLU CYS ALA LYS ILE GLU ALA ARG ILE ASP GLU VAL VAL SEQRES 4 A 220 SER ARG ALA GLU LYS GLY LEU TYR ASN GLU HIS THR VAL SEQRES 5 A 220 ASP ARG ALA PRO LEU ARG ASN LYS TYR PHE PHE GLY GLU SEQRES 6 A 220 GLY TYR THR TYR GLY ALA GLN LEU GLN LYS ARG GLY PRO SEQRES 7 A 220 GLY GLN GLU ARG LEU TYR PRO PRO GLY ASP VAL ASP GLU SEQRES 8 A 220 ILE PRO GLU TRP VAL HIS GLN LEU VAL ILE GLN LYS LEU SEQRES 9 A 220 VAL GLU HIS ARG VAL ILE PRO GLU GLY PHE VAL ASN SER SEQRES 10 A 220 ALA VAL ILE ASN ASP TYR GLN PRO GLY GLY CYS ILE VAL SEQRES 11 A 220 SER HIS VAL ASP PRO ILE HIS ILE PHE GLU ARG PRO ILE SEQRES 12 A 220 VAL SER VAL SER PHE PHE SER ASP SER ALA LEU CYS PHE SEQRES 13 A 220 GLY CYS LYS PHE GLN PHE LYS PRO ILE ARG VAL SER GLU SEQRES 14 A 220 PRO VAL LEU SER LEU PRO VAL ARG ARG GLY SER VAL THR SEQRES 15 A 220 VAL LEU SER GLY TYR ALA ALA ASP GLU ILE THR HIS CYS SEQRES 16 A 220 ILE ARG PRO GLN ASP ILE LYS GLU ARG ARG ALA VAL ILE SEQRES 17 A 220 ILE LEU ARG LYS THR ARG LEU ASP ALA PRO ARG LEU SEQRES 1 B 8 U G G 6MZ C U G C SEQRES 1 C 220 SER GLN GLN LEU GLN LYS GLU GLU GLU ALA ARG LYS VAL SEQRES 2 C 220 LYS SER GLY ILE ARG GLN MET ARG LEU PHE SER GLN ASP SEQRES 3 C 220 GLU CYS ALA LYS ILE GLU ALA ARG ILE ASP GLU VAL VAL SEQRES 4 C 220 SER ARG ALA GLU LYS GLY LEU TYR ASN GLU HIS THR VAL SEQRES 5 C 220 ASP ARG ALA PRO LEU ARG ASN LYS TYR PHE PHE GLY GLU SEQRES 6 C 220 GLY TYR THR TYR GLY ALA GLN LEU GLN LYS ARG GLY PRO SEQRES 7 C 220 GLY GLN GLU ARG LEU TYR PRO PRO GLY ASP VAL ASP GLU SEQRES 8 C 220 ILE PRO GLU TRP VAL HIS GLN LEU VAL ILE GLN LYS LEU SEQRES 9 C 220 VAL GLU HIS ARG VAL ILE PRO GLU GLY PHE VAL ASN SER SEQRES 10 C 220 ALA VAL ILE ASN ASP TYR GLN PRO GLY GLY CYS ILE VAL SEQRES 11 C 220 SER HIS VAL ASP PRO ILE HIS ILE PHE GLU ARG PRO ILE SEQRES 12 C 220 VAL SER VAL SER PHE PHE SER ASP SER ALA LEU CYS PHE SEQRES 13 C 220 GLY CYS LYS PHE GLN PHE LYS PRO ILE ARG VAL SER GLU SEQRES 14 C 220 PRO VAL LEU SER LEU PRO VAL ARG ARG GLY SER VAL THR SEQRES 15 C 220 VAL LEU SER GLY TYR ALA ALA ASP GLU ILE THR HIS CYS SEQRES 16 C 220 ILE ARG PRO GLN ASP ILE LYS GLU ARG ARG ALA VAL ILE SEQRES 17 C 220 ILE LEU ARG LYS THR ARG LEU ASP ALA PRO ARG LEU SEQRES 1 D 8 U G G 6MZ C U G C SEQRES 1 E 220 SER GLN GLN LEU GLN LYS GLU GLU GLU ALA ARG LYS VAL SEQRES 2 E 220 LYS SER GLY ILE ARG GLN MET ARG LEU PHE SER GLN ASP SEQRES 3 E 220 GLU CYS ALA LYS ILE GLU ALA ARG ILE ASP GLU VAL VAL SEQRES 4 E 220 SER ARG ALA GLU LYS GLY LEU TYR ASN GLU HIS THR VAL SEQRES 5 E 220 ASP ARG ALA PRO LEU ARG ASN LYS TYR PHE PHE GLY GLU SEQRES 6 E 220 GLY TYR THR TYR GLY ALA GLN LEU GLN LYS ARG GLY PRO SEQRES 7 E 220 GLY GLN GLU ARG LEU TYR PRO PRO GLY ASP VAL ASP GLU SEQRES 8 E 220 ILE PRO GLU TRP VAL HIS GLN LEU VAL ILE GLN LYS LEU SEQRES 9 E 220 VAL GLU HIS ARG VAL ILE PRO GLU GLY PHE VAL ASN SER SEQRES 10 E 220 ALA VAL ILE ASN ASP TYR GLN PRO GLY GLY CYS ILE VAL SEQRES 11 E 220 SER HIS VAL ASP PRO ILE HIS ILE PHE GLU ARG PRO ILE SEQRES 12 E 220 VAL SER VAL SER PHE PHE SER ASP SER ALA LEU CYS PHE SEQRES 13 E 220 GLY CYS LYS PHE GLN PHE LYS PRO ILE ARG VAL SER GLU SEQRES 14 E 220 PRO VAL LEU SER LEU PRO VAL ARG ARG GLY SER VAL THR SEQRES 15 E 220 VAL LEU SER GLY TYR ALA ALA ASP GLU ILE THR HIS CYS SEQRES 16 E 220 ILE ARG PRO GLN ASP ILE LYS GLU ARG ARG ALA VAL ILE SEQRES 17 E 220 ILE LEU ARG LYS THR ARG LEU ASP ALA PRO ARG LEU SEQRES 1 F 8 U G G 6MZ C U G C HET 6MZ B 4 23 HET 6MZ D 4 23 HET 6MZ F 4 23 HET MN A 301 1 HET AKG A 302 10 HET MN C 301 1 HET AKG C 302 10 HET MN E 301 1 HET AKG E 302 10 HETNAM 6MZ N6-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 6MZ 3(C11 H16 N5 O7 P) FORMUL 7 MN 3(MN 2+) FORMUL 8 AKG 3(C5 H6 O5) FORMUL 13 HOH *89(H2 O) HELIX 1 AA1 GLN A 74 GLY A 88 1 15 HELIX 2 AA2 SER A 96 LYS A 116 1 21 HELIX 3 AA3 ASN A 120 HIS A 122 5 3 HELIX 4 AA4 TYR A 141 LEU A 145 5 5 HELIX 5 AA5 PRO A 165 VAL A 172 1 8 HELIX 6 AA6 VAL A 172 HIS A 179 1 8 HELIX 7 AA7 GLY A 258 GLU A 263 1 6 HELIX 8 AA8 ARG A 269 ILE A 273 5 5 HELIX 9 AA9 GLN C 75 GLY C 88 1 14 HELIX 10 AB1 SER C 96 LYS C 116 1 21 HELIX 11 AB2 ASN C 120 HIS C 122 5 3 HELIX 12 AB3 TYR C 141 LEU C 145 5 5 HELIX 13 AB4 PRO C 165 VAL C 172 1 8 HELIX 14 AB5 VAL C 172 HIS C 179 1 8 HELIX 15 AB6 GLY C 258 GLU C 263 1 6 HELIX 16 AB7 ARG C 269 ILE C 273 5 5 HELIX 17 AB8 GLN E 75 GLY E 88 1 14 HELIX 18 AB9 SER E 96 LYS E 116 1 21 HELIX 19 AC1 ASN E 120 HIS E 122 5 3 HELIX 20 AC2 TYR E 141 LEU E 145 5 5 HELIX 21 AC3 PRO E 165 VAL E 172 1 8 HELIX 22 AC4 VAL E 172 HIS E 179 1 8 HELIX 23 AC5 GLY E 258 GLU E 263 1 6 HELIX 24 AC6 ARG E 269 ILE E 273 5 5 SHEET 1 AA1 7 ILE A 89 ARG A 93 0 SHEET 2 AA1 7 SER A 252 LEU A 256 -1 O VAL A 255 N ARG A 90 SHEET 3 AA1 7 PHE A 211 PHE A 220 -1 N SER A 217 O THR A 254 SHEET 4 AA1 7 ARG A 277 THR A 285 -1 O LYS A 284 N GLU A 212 SHEET 5 AA1 7 SER A 189 TYR A 195 -1 N VAL A 191 O ILE A 281 SHEET 6 AA1 7 ARG A 130 PHE A 135 -1 N ASN A 131 O ASP A 194 SHEET 7 AA1 7 VAL A 124 ALA A 127 -1 N ASP A 125 O LYS A 132 SHEET 1 AA2 2 TYR A 139 THR A 140 0 SHEET 2 AA2 2 ARG A 154 LEU A 155 -1 O ARG A 154 N THR A 140 SHEET 1 AA3 4 ILE A 201 HIS A 204 0 SHEET 2 AA3 4 HIS A 266 ILE A 268 -1 O HIS A 266 N HIS A 204 SHEET 3 AA3 4 SER A 224 PHE A 228 -1 N CYS A 227 O CYS A 267 SHEET 4 AA3 4 LEU A 244 VAL A 248 -1 O VAL A 248 N SER A 224 SHEET 1 AA4 2 PHE A 232 GLN A 233 0 SHEET 2 AA4 2 ARG A 238 VAL A 239 -1 O ARG A 238 N GLN A 233 SHEET 1 AA5 7 ILE C 89 ARG C 93 0 SHEET 2 AA5 7 SER C 252 LEU C 256 -1 O VAL C 255 N ARG C 90 SHEET 3 AA5 7 ILE C 215 PHE C 220 -1 N SER C 217 O THR C 254 SHEET 4 AA5 7 ARG C 277 ARG C 283 -1 O LEU C 282 N VAL C 216 SHEET 5 AA5 7 SER C 189 TYR C 195 -1 N VAL C 191 O ILE C 281 SHEET 6 AA5 7 ARG C 130 PHE C 135 -1 N ASN C 131 O ASP C 194 SHEET 7 AA5 7 VAL C 124 ALA C 127 -1 N ASP C 125 O LYS C 132 SHEET 1 AA6 4 ILE C 201 HIS C 204 0 SHEET 2 AA6 4 HIS C 266 ILE C 268 -1 O HIS C 266 N HIS C 204 SHEET 3 AA6 4 SER C 224 PHE C 228 -1 N CYS C 227 O CYS C 267 SHEET 4 AA6 4 LEU C 244 VAL C 248 -1 O VAL C 248 N SER C 224 SHEET 1 AA7 2 PHE C 232 GLN C 233 0 SHEET 2 AA7 2 ARG C 238 VAL C 239 -1 O ARG C 238 N GLN C 233 SHEET 1 AA8 7 ILE E 89 ARG E 93 0 SHEET 2 AA8 7 SER E 252 LEU E 256 -1 O VAL E 255 N ARG E 90 SHEET 3 AA8 7 ILE E 215 PHE E 220 -1 N SER E 217 O THR E 254 SHEET 4 AA8 7 ARG E 277 ARG E 283 -1 O LEU E 282 N VAL E 216 SHEET 5 AA8 7 SER E 189 TYR E 195 -1 N VAL E 191 O ILE E 281 SHEET 6 AA8 7 ARG E 130 PHE E 135 -1 N ASN E 131 O ASP E 194 SHEET 7 AA8 7 VAL E 124 ALA E 127 -1 N ASP E 125 O LYS E 132 SHEET 1 AA9 4 ILE E 201 HIS E 204 0 SHEET 2 AA9 4 HIS E 266 ILE E 268 -1 O HIS E 266 N HIS E 204 SHEET 3 AA9 4 SER E 224 PHE E 228 -1 N CYS E 227 O CYS E 267 SHEET 4 AA9 4 LEU E 244 VAL E 248 -1 O VAL E 248 N SER E 224 SHEET 1 AB1 2 PHE E 232 GLN E 233 0 SHEET 2 AB1 2 ARG E 238 VAL E 239 -1 O ARG E 238 N GLN E 233 LINK O3' G B 3 P 6MZ B 4 1555 1555 1.61 LINK O3' 6MZ B 4 P C B 5 1555 1555 1.60 LINK O3' G D 3 P 6MZ D 4 1555 1555 1.60 LINK O3' 6MZ D 4 P C D 5 1555 1555 1.61 LINK O3' G F 3 P 6MZ F 4 1555 1555 1.61 LINK O3' 6MZ F 4 P C F 5 1555 1555 1.61 LINK NE2 HIS A 204 MN MN A 301 1555 1555 2.43 LINK OD1 ASP A 206 MN MN A 301 1555 1555 2.27 LINK NE2 HIS A 266 MN MN A 301 1555 1555 2.45 LINK MN MN A 301 O2 AKG A 302 1555 1555 2.03 LINK MN MN A 301 O5 AKG A 302 1555 1555 2.15 LINK MN MN A 301 O HOH A 402 1555 1555 2.41 LINK NE2 HIS C 204 MN MN C 301 1555 1555 2.58 LINK OD1 ASP C 206 MN MN C 301 1555 1555 1.87 LINK NE2 HIS C 266 MN MN C 301 1555 1555 2.17 LINK MN MN C 301 O1 AKG C 302 1555 1555 2.01 LINK MN MN C 301 O5 AKG C 302 1555 1555 2.23 LINK MN MN C 301 O HOH C 404 1555 1555 2.21 LINK NE2 HIS E 204 MN MN E 301 1555 1555 2.32 LINK OD1 ASP E 206 MN MN E 301 1555 1555 2.34 LINK NE2 HIS E 266 MN MN E 301 1555 1555 2.42 LINK MN MN E 301 O1 AKG E 302 1555 1555 1.96 LINK MN MN E 301 O5 AKG E 302 1555 1555 2.01 LINK MN MN E 301 O HOH E 402 1555 1555 2.30 CISPEP 1 ARG A 213 PRO A 214 0 2.59 CISPEP 2 LYS A 235 PRO A 236 0 -3.36 CISPEP 3 ARG C 213 PRO C 214 0 2.28 CISPEP 4 LYS C 235 PRO C 236 0 -4.43 CISPEP 5 ARG E 213 PRO E 214 0 3.13 CISPEP 6 LYS E 235 PRO E 236 0 -3.87 CRYST1 78.364 78.364 106.688 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012761 0.007368 0.000000 0.00000 SCALE2 0.000000 0.014735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009373 0.00000