HEADER TOXIN 14-JAN-22 7WMD TITLE PQQ-DEPENDENT ALCOHOL DEHYDROGENASE DETOXIFYING DON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PQQ-DEPENDENT ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEVOSIA ALBOGILVA; SOURCE 3 ORGANISM_TAXID: 429726; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, PQQ, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,H.YANG,F.LV REVDAT 2 29-NOV-23 7WMD 1 REMARK REVDAT 1 07-SEP-22 7WMD 0 JRNL AUTH H.YANG,R.YAN,Y.LI,Z.LU,X.BIE,H.ZHAO,F.LU,M.CHEN JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF A QUINONE-DEPENDENT JRNL TITL 2 DEHYDROGENASE CAPABLE OF DEOXYNIVALENOL DETOXIFICATION. JRNL REF J.AGRIC.FOOD CHEM. V. 70 6764 2022 JRNL REFN ESSN 1520-5118 JRNL PMID 35613468 JRNL DOI 10.1021/ACS.JAFC.2C01083 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4300 - 4.8200 1.00 2550 146 0.1922 0.2108 REMARK 3 2 4.8200 - 3.8300 1.00 2516 145 0.1343 0.1628 REMARK 3 3 3.8200 - 3.3400 1.00 2501 144 0.1567 0.2107 REMARK 3 4 3.3400 - 3.0400 1.00 2513 144 0.1748 0.2211 REMARK 3 5 3.0400 - 2.8200 0.99 2484 144 0.1737 0.2381 REMARK 3 6 2.8200 - 2.6500 0.99 2473 141 0.1786 0.2340 REMARK 3 7 2.6500 - 2.5200 1.00 2489 143 0.1744 0.2560 REMARK 3 8 2.5200 - 2.4100 0.99 2494 143 0.1706 0.2291 REMARK 3 9 2.4100 - 2.3200 0.99 2436 140 0.1626 0.2034 REMARK 3 10 2.3200 - 2.2400 0.99 2478 143 0.1743 0.2431 REMARK 3 11 2.2400 - 2.1700 0.99 2477 143 0.1642 0.2425 REMARK 3 12 2.1700 - 2.1100 0.99 2457 141 0.1709 0.2449 REMARK 3 13 2.1100 - 2.0500 0.99 2466 142 0.1795 0.2380 REMARK 3 14 2.0500 - 2.0000 0.99 2464 141 0.1754 0.2454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978530 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.630 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4CVB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M BIS-TRIS PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3350, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.26950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.26800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.26950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.26800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 70 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 823 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 998 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LEU A 114 REMARK 465 PRO A 115 REMARK 465 PRO A 116 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 LYS A 119 REMARK 465 PHE A 120 REMARK 465 ILE A 121 REMARK 465 ASN A 122 REMARK 465 SER A 123 REMARK 465 LEU A 124 REMARK 465 GLY A 125 REMARK 465 GLN A 165 REMARK 465 GLY A 166 REMARK 465 VAL A 167 REMARK 465 GLU A 168 REMARK 465 GLU A 169 REMARK 465 GLY A 170 REMARK 465 VAL A 171 REMARK 465 SER A 172 REMARK 465 TYR A 192 REMARK 465 SER A 193 REMARK 465 GLY A 194 REMARK 465 PHE A 195 REMARK 465 GLY A 196 REMARK 465 LYS A 435 REMARK 465 ALA A 436 REMARK 465 ARG A 437 REMARK 465 THR A 438 REMARK 465 THR A 439 REMARK 465 GLU A 440 REMARK 465 ALA A 441 REMARK 465 THR A 442 REMARK 465 PRO A 443 REMARK 465 ALA A 444 REMARK 465 ASP A 445 REMARK 465 VAL A 446 REMARK 465 TYR A 447 REMARK 465 ASN A 448 REMARK 465 THR A 449 REMARK 465 ASP A 450 REMARK 465 SER A 451 REMARK 465 THR A 452 REMARK 465 GLU A 577 REMARK 465 ALA A 578 REMARK 465 LYS A 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 702 O HOH A 703 1.89 REMARK 500 OE1 GLU A 394 O HOH A 701 2.00 REMARK 500 NZ LYS A 113 O HOH A 702 2.08 REMARK 500 O HOH A 715 O HOH A 728 2.09 REMARK 500 O HOH A 717 O HOH A 721 2.10 REMARK 500 O HOH A 913 O HOH A 1028 2.11 REMARK 500 NZ LYS A 113 O HOH A 703 2.12 REMARK 500 O HOH A 914 O HOH A 1030 2.15 REMARK 500 O HOH A 806 O HOH A 1002 2.17 REMARK 500 OE2 GLU A 516 O HOH A 704 2.18 REMARK 500 O HOH A 950 O HOH A 1006 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 512 O HOH A 701 4455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 397 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 -92.58 -101.52 REMARK 500 ILE A 107 -63.89 -101.98 REMARK 500 LEU A 275 60.24 66.91 REMARK 500 LEU A 298 86.53 -155.07 REMARK 500 GLU A 306 76.88 39.67 REMARK 500 CYS A 307 49.32 -80.68 REMARK 500 ASN A 319 56.40 -146.22 REMARK 500 THR A 369 -90.52 -113.65 REMARK 500 LYS A 393 -69.03 -129.03 REMARK 500 PRO A 403 -114.32 -83.72 REMARK 500 ASP A 410 -157.01 -146.45 REMARK 500 LEU A 485 -69.60 -91.71 REMARK 500 ASP A 503 31.45 -93.54 REMARK 500 ARG A 504 4.18 82.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 136 OD1 REMARK 620 2 ASP A 136 OD2 51.1 REMARK 620 3 GLU A 205 OE1 138.8 162.1 REMARK 620 4 GLU A 205 OE2 87.4 134.1 51.4 REMARK 620 5 HOH A 988 O 125.9 77.9 86.6 126.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 306 OE2 REMARK 620 2 HOH A 932 O 117.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 398 OD1 REMARK 620 2 ASP A 398 OD2 52.9 REMARK 620 3 ASP A 433 OD1 99.3 140.8 REMARK 620 4 ASP A 433 OD2 103.7 152.8 45.5 REMARK 620 5 HOH A 848 O 83.6 98.7 105.5 61.4 REMARK 620 6 HOH A 990 O 156.7 103.7 101.5 98.4 100.8 REMARK 620 N 1 2 3 4 5 DBREF 7WMD A 1 579 PDB 7WMD 7WMD 1 579 SEQRES 1 A 579 MET HIS ALA ASP GLY ALA ALA ALA GLU THR ALA ALA PRO SEQRES 2 A 579 GLY GLN SER ALA ILE GLU ASN PHE GLN PRO VAL THR ALA SEQRES 3 A 579 GLU ASP LEU ALA GLY GLY ASN ALA ALA ASN TRP PRO ILE SEQRES 4 A 579 LEU ARG GLY ASN TYR GLN GLY TRP GLY TYR THR GLN LEU SEQRES 5 A 579 ASP GLN ILE ASN LYS ASP ASN VAL GLY GLN LEU GLN LEU SEQRES 6 A 579 ALA TRP ALA ARG THR MET GLU PRO GLY SER ASN GLU GLY SEQRES 7 A 579 SER ALA ILE ALA TYR ASN GLY VAL VAL PHE LEU GLY ASN SEQRES 8 A 579 ALA ASN ASP VAL VAL GLN ALA ILE ASP GLY LYS THR GLY SEQRES 9 A 579 ASN LEU ILE TRP GLU TYR ARG ARG LYS LEU PRO PRO ALA SEQRES 10 A 579 SER LYS PHE ILE ASN SER LEU GLY ALA ALA LYS ARG SER SEQRES 11 A 579 ILE ALA LEU PHE GLY ASP LYS VAL TYR PHE VAL SER TRP SEQRES 12 A 579 ASP ASN PHE VAL VAL ALA LEU ASP ALA LYS THR GLY LYS SEQRES 13 A 579 LEU ALA TRP GLU THR ASN ARG GLY GLN GLY VAL GLU GLU SEQRES 14 A 579 GLY VAL SER ASN SER SER GLY PRO ILE VAL VAL ASP GLY SEQRES 15 A 579 VAL VAL ILE ALA GLY SER THR CYS GLN TYR SER GLY PHE SEQRES 16 A 579 GLY CYS TYR VAL THR GLY THR ASP ALA GLU SER GLY GLU SEQRES 17 A 579 GLU LEU TRP ARG ASN THR PHE ILE PRO ARG PRO GLY GLU SEQRES 18 A 579 GLU GLY ASP ASP THR TRP GLY GLY ALA PRO TYR GLU ASN SEQRES 19 A 579 ARG TRP MET THR GLY ALA TRP GLY GLN ILE THR TYR ASP SEQRES 20 A 579 PRO GLU LEU ASP LEU VAL TYR TYR GLY SER THR GLY ALA SEQRES 21 A 579 GLY PRO ALA SER GLU VAL GLN ARG GLY THR GLU GLY GLY SEQRES 22 A 579 THR LEU ALA GLY THR ASN THR ARG PHE ALA VAL LYS PRO SEQRES 23 A 579 LYS THR GLY GLU VAL VAL TRP LYS HIS GLN THR LEU PRO SEQRES 24 A 579 ARG ASP ASN TRP ASP SER GLU CYS THR PHE GLU MET MET SEQRES 25 A 579 VAL VAL SER THR THR VAL ASN PRO ASP ALA GLY ALA ASP SEQRES 26 A 579 GLY MET MET SER VAL GLY ALA ASN VAL PRO ARG GLY GLU SEQRES 27 A 579 THR ARG LYS VAL LEU THR GLY VAL PRO CYS LYS THR GLY SEQRES 28 A 579 VAL ALA TRP GLN PHE ASP ALA GLU THR GLY ASP TYR PHE SEQRES 29 A 579 TRP SER LYS ALA THR VAL GLU GLN ASN SER ILE ALA SER SEQRES 30 A 579 ILE ASP ASP LYS GLY LEU VAL THR VAL ASN GLU ASP MET SEQRES 31 A 579 ILE LEU LYS GLU PRO GLY LYS ASP TYR ASN TYR CYS PRO SEQRES 32 A 579 THR PHE LEU GLY GLY ARG ASP TRP PRO SER ALA GLY TYR SEQRES 33 A 579 LEU PRO LYS SER ASN LEU TYR VAL ILE PRO LEU SER ASN SEQRES 34 A 579 ALA CYS TYR ASP LEU LYS ALA ARG THR THR GLU ALA THR SEQRES 35 A 579 PRO ALA ASP VAL TYR ASN THR ASP SER THR VAL LYS LEU SEQRES 36 A 579 ALA PRO GLY LYS THR ASN MET GLY ARG VAL ASP ALA ILE SEQRES 37 A 579 ASP VAL ALA THR GLY ALA THR LYS TRP SER PHE GLU THR SEQRES 38 A 579 GLU ALA ALA LEU TYR ASP PRO VAL MET THR THR ALA GLY SEQRES 39 A 579 ASP LEU VAL PHE VAL GLY SER THR ASP ARG MET PHE ARG SEQRES 40 A 579 ALA LEU ASP ALA GLU THR GLY LYS GLU VAL TRP SER THR SEQRES 41 A 579 ARG LEU PRO GLY ALA ILE SER GLY TYR THR THR SER TYR SEQRES 42 A 579 SER ILE ASP GLY ARG GLN TYR VAL ALA VAL VAL ALA GLY SEQRES 43 A 579 GLY SER LEU GLY THR GLY PHE PHE LYS ALA ALA VAL PRO SEQRES 44 A 579 GLY VAL ASP ALA VAL GLN GLY GLY ASN GLY ILE TYR VAL SEQRES 45 A 579 PHE ALA LEU PRO GLU ALA LYS HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *336(H2 O) HELIX 1 AA1 THR A 25 ALA A 30 1 6 HELIX 2 AA2 ASN A 59 LEU A 63 5 5 HELIX 3 AA3 GLY A 223 GLY A 228 5 6 HELIX 4 AA4 PRO A 231 ARG A 235 5 5 HELIX 5 AA5 SER A 264 GLY A 269 1 6 HELIX 6 AA6 GLU A 388 ILE A 391 5 4 HELIX 7 AA7 SER A 548 VAL A 558 1 11 SHEET 1 AA1 5 TYR A 49 THR A 50 0 SHEET 2 AA1 5 VAL A 489 THR A 492 1 O THR A 491 N THR A 50 SHEET 3 AA1 5 LEU A 496 GLY A 500 -1 O PHE A 498 N MET A 490 SHEET 4 AA1 5 MET A 505 ASP A 510 -1 O LEU A 509 N VAL A 497 SHEET 5 AA1 5 GLU A 516 ARG A 521 -1 O THR A 520 N PHE A 506 SHEET 1 AA2 4 GLN A 64 THR A 70 0 SHEET 2 AA2 4 GLY A 569 ALA A 574 -1 O VAL A 572 N TRP A 67 SHEET 3 AA2 4 ARG A 538 ALA A 545 -1 N VAL A 541 O PHE A 573 SHEET 4 AA2 4 THR A 530 ILE A 535 -1 N TYR A 533 O TYR A 540 SHEET 1 AA3 4 ALA A 80 TYR A 83 0 SHEET 2 AA3 4 VAL A 86 GLY A 90 -1 O PHE A 88 N ILE A 81 SHEET 3 AA3 4 VAL A 95 ASP A 100 -1 O ILE A 99 N VAL A 87 SHEET 4 AA3 4 LEU A 106 ARG A 111 -1 O TYR A 110 N VAL A 96 SHEET 1 AA4 4 ALA A 132 PHE A 134 0 SHEET 2 AA4 4 LYS A 137 VAL A 141 -1 O TYR A 139 N ALA A 132 SHEET 3 AA4 4 PHE A 146 ASP A 151 -1 O VAL A 148 N PHE A 140 SHEET 4 AA4 4 LEU A 157 ASN A 162 -1 O TRP A 159 N ALA A 149 SHEET 1 AA5 4 ILE A 178 VAL A 180 0 SHEET 2 AA5 4 VAL A 183 ALA A 186 -1 O ILE A 185 N ILE A 178 SHEET 3 AA5 4 TYR A 198 ASP A 203 -1 O THR A 202 N VAL A 184 SHEET 4 AA5 4 GLU A 209 THR A 214 -1 O LEU A 210 N GLY A 201 SHEET 1 AA6 2 TRP A 236 MET A 237 0 SHEET 2 AA6 2 ALA A 260 GLY A 261 -1 O GLY A 261 N TRP A 236 SHEET 1 AA7 4 THR A 245 ASP A 247 0 SHEET 2 AA7 4 LEU A 252 GLY A 256 -1 O TYR A 254 N THR A 245 SHEET 3 AA7 4 THR A 280 VAL A 284 -1 O VAL A 284 N VAL A 253 SHEET 4 AA7 4 VAL A 291 GLN A 296 -1 O VAL A 292 N ALA A 283 SHEET 1 AA8 5 MET A 312 THR A 317 0 SHEET 2 AA8 5 THR A 339 GLY A 345 -1 O VAL A 342 N VAL A 314 SHEET 3 AA8 5 ALA A 353 ASP A 357 -1 O TRP A 354 N GLY A 345 SHEET 4 AA8 5 TYR A 363 LYS A 367 -1 O LYS A 367 N ALA A 353 SHEET 5 AA8 5 MET A 327 VAL A 330 -1 N MET A 328 O SER A 366 SHEET 1 AA9 2 ILE A 375 ILE A 378 0 SHEET 2 AA9 2 VAL A 384 VAL A 386 -1 O THR A 385 N SER A 377 SHEET 1 AB1 3 ASN A 400 TYR A 401 0 SHEET 2 AB1 3 ALA A 430 ASP A 433 -1 O TYR A 432 N TYR A 401 SHEET 3 AB1 3 LYS A 454 LEU A 455 -1 O LYS A 454 N CYS A 431 SHEET 1 AB2 4 GLY A 415 LEU A 417 0 SHEET 2 AB2 4 LEU A 422 SER A 428 -1 O VAL A 424 N GLY A 415 SHEET 3 AB2 4 GLY A 463 ASP A 469 -1 O ARG A 464 N LEU A 427 SHEET 4 AB2 4 THR A 475 THR A 481 -1 O PHE A 479 N VAL A 465 SSBOND 1 CYS A 190 CYS A 197 1555 1555 2.03 SSBOND 2 CYS A 307 CYS A 348 1555 1555 2.05 SSBOND 3 CYS A 402 CYS A 431 1555 1555 2.05 LINK OD1 ASP A 136 CA CA A 603 1555 1555 2.40 LINK OD2 ASP A 136 CA CA A 603 1555 1555 2.65 LINK OE1 GLU A 205 CA CA A 603 1555 1555 2.67 LINK OE2 GLU A 205 CA CA A 603 1555 1555 2.34 LINK OE2 GLU A 306 CA CA A 602 1555 1555 2.38 LINK OD1 ASP A 398 CA CA A 601 1555 1555 2.42 LINK OD2 ASP A 398 CA CA A 601 1555 1555 2.47 LINK OD1 ASP A 433 CA CA A 601 1555 1555 2.44 LINK OD2 ASP A 433 CA CA A 601 1555 1555 3.04 LINK CA CA A 601 O HOH A 848 1555 1555 2.16 LINK CA CA A 601 O HOH A 990 1555 1555 2.54 LINK CA CA A 602 O HOH A 932 1555 1555 2.53 LINK CA CA A 603 O HOH A 988 1555 1555 2.54 CISPEP 1 GLY A 261 PRO A 262 0 -8.53 CISPEP 2 CYS A 402 PRO A 403 0 -0.91 CISPEP 3 GLY A 407 GLY A 408 0 -0.89 CRYST1 110.539 90.536 57.294 90.00 103.81 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009047 0.000000 0.002224 0.00000 SCALE2 0.000000 0.011045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017974 0.00000