HEADER VIRAL PROTEIN/IMMUNE SYSTEM 18-JAN-22 7WNB TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE RECEPTOR-BINDING DOMAIN (RBD) IN TITLE 2 COMPLEX WITH NCV2SG48 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: R; COMPND 4 FRAGMENT: RECEPTOR-BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FAB HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SPIKE, CORONAVIRUS, VIRAL PROTEIN, FAB, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMAMOTO,A.HIGASHIURA REVDAT 1 19-APR-23 7WNB 0 JRNL AUTH K.SHITAOKA,A.HIGASHIURA,Y.KAWANO,A.YAMAMOTO,Y.MIZOGUCHI, JRNL AUTH 2 T.HASHIGUCHI,N.NISHIMICHI,S.HUANG,A.ITO,S.OHKI,M.KANDA, JRNL AUTH 3 T.TANIGUCHI,R.YOSHIZATO,H.AZUMA,Y.KITAJIMA,Y.YOKOSAKI, JRNL AUTH 4 S.OKADA,T.SAKAGUCHI,T.YASUDA JRNL TITL STRUCTURAL BASIS OF SPIKE RBM-SPECIFIC HUMAN ANTIBODIES JRNL TITL 2 COUNTERACTING BROAD SARS-COV-2 VARIANTS. JRNL REF COMMUN BIOL V. 6 395 2023 JRNL REFN ESSN 2399-3642 JRNL PMID 37041231 JRNL DOI 10.1038/S42003-023-04782-6 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 53717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6480 - 5.8128 0.99 2900 161 0.2072 0.2335 REMARK 3 2 5.8128 - 4.6155 0.99 2780 145 0.1759 0.1779 REMARK 3 3 4.6155 - 4.0325 1.00 2764 144 0.1799 0.2488 REMARK 3 4 4.0325 - 3.6640 1.00 2735 130 0.2315 0.2378 REMARK 3 5 3.6640 - 3.4015 0.99 2740 119 0.2570 0.2946 REMARK 3 6 3.4015 - 3.2010 1.00 2716 142 0.2689 0.2576 REMARK 3 7 3.2010 - 3.0408 1.00 2717 152 0.2644 0.3143 REMARK 3 8 3.0408 - 2.9084 1.00 2687 125 0.2621 0.2728 REMARK 3 9 2.9084 - 2.7965 1.00 2706 152 0.2806 0.3592 REMARK 3 10 2.7965 - 2.7000 1.00 2679 158 0.2742 0.3261 REMARK 3 11 2.7000 - 2.6156 1.00 2703 143 0.2728 0.3281 REMARK 3 12 2.6156 - 2.5408 1.00 2690 142 0.2836 0.3480 REMARK 3 13 2.5408 - 2.4739 1.00 2699 144 0.2846 0.3527 REMARK 3 14 2.4739 - 2.4136 1.00 2671 144 0.3009 0.3645 REMARK 3 15 2.4136 - 2.3587 1.00 2658 155 0.2983 0.4056 REMARK 3 16 2.3587 - 2.3085 1.00 2713 119 0.3254 0.3745 REMARK 3 17 2.3085 - 2.2624 0.98 2609 143 0.3448 0.3623 REMARK 3 18 2.2624 - 2.2197 0.95 2546 146 0.3619 0.4068 REMARK 3 19 2.2197 - 2.1800 0.88 2301 139 0.3579 0.4190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4941 REMARK 3 ANGLE : 0.966 6730 REMARK 3 CHIRALITY : 0.055 750 REMARK 3 PLANARITY : 0.006 864 REMARK 3 DIHEDRAL : 11.498 2931 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300027059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54347 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 102.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7EAM, 7CHP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM SULFATE, 19% PEG3350, REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.64850 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.17050 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.64850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.17050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, L, H, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN R 321 REMARK 465 PRO R 322 REMARK 465 THR R 323 REMARK 465 GLU R 324 REMARK 465 SER R 325 REMARK 465 ILE R 326 REMARK 465 VAL R 327 REMARK 465 ARG R 328 REMARK 465 PHE R 329 REMARK 465 PRO R 330 REMARK 465 ASN R 331 REMARK 465 ILE R 332 REMARK 465 THR R 333 REMARK 465 THR R 531 REMARK 465 ASN R 532 REMARK 465 LEU R 533 REMARK 465 VAL R 534 REMARK 465 LYS R 535 REMARK 465 ASN R 536 REMARK 465 THR R 537 REMARK 465 GLY R 538 REMARK 465 HIS R 539 REMARK 465 HIS R 540 REMARK 465 HIS R 541 REMARK 465 HIS R 542 REMARK 465 HIS R 543 REMARK 465 HIS R 544 REMARK 465 LYS H 133 REMARK 465 SER H 134 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 LYS H 218 REMARK 465 SER H 219 REMARK 465 CYS H 220 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 THR H 223 REMARK 465 GLY H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU R 368 -63.98 -94.58 REMARK 500 SER R 371 -37.73 -131.59 REMARK 500 ALA R 372 -7.47 66.07 REMARK 500 THR R 385 -4.78 70.47 REMARK 500 ASN R 422 -54.28 -123.34 REMARK 500 ALA L 53 -20.28 72.95 REMARK 500 SER L 54 -4.46 -144.34 REMARK 500 PRO L 98 78.72 -63.80 REMARK 500 ASN L 155 -1.00 76.56 REMARK 500 LEU H 99 53.91 -98.31 REMARK 500 VAL H 100 -50.23 -15.46 REMARK 500 ASP H 148 62.86 62.58 REMARK 500 ALA H 162 10.30 -68.57 REMARK 500 THR H 164 -31.69 -130.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7WN2 RELATED DB: PDB DBREF 7WNB R 321 536 UNP P0DTC2 SPIKE_SARS2 321 536 DBREF 7WNB L 1 216 PDB 7WNB 7WNB 1 216 DBREF 7WNB H 1 230 PDB 7WNB 7WNB 1 230 SEQADV 7WNB THR R 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB GLY R 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB HIS R 539 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB HIS R 540 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB HIS R 541 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB HIS R 542 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB HIS R 543 UNP P0DTC2 EXPRESSION TAG SEQADV 7WNB HIS R 544 UNP P0DTC2 EXPRESSION TAG SEQRES 1 R 224 GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN ILE THR SEQRES 2 R 224 ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR ARG SEQRES 3 R 224 PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER SEQRES 4 R 224 ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER ALA SEQRES 5 R 224 SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO THR SEQRES 6 R 224 LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SEQRES 7 R 224 SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA SEQRES 8 R 224 PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR LYS SEQRES 9 R 224 LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SEQRES 10 R 224 SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR ASN SEQRES 11 R 224 TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO SEQRES 12 R 224 PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY SEQRES 13 R 224 SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS TYR SEQRES 14 R 224 PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN GLY SEQRES 15 R 224 VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER PHE SEQRES 16 R 224 GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO LYS SEQRES 17 R 224 LYS SER THR ASN LEU VAL LYS ASN THR GLY HIS HIS HIS SEQRES 18 R 224 HIS HIS HIS SEQRES 1 L 214 ALA ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE SER SER HIS LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE PHE ALA ALA SER SEQRES 5 L 214 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN HIS LEU SEQRES 8 L 214 ASN SER ASN PRO PRO ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 214 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 214 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 214 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 214 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 214 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 214 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 214 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 214 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 214 SER PHE ASN ARG GLY GLU SEQRES 1 H 230 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE ILE VAL SER ARG ASN TYR MET ASN TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA LEU ILE TYR SEQRES 5 H 230 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 230 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 230 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 230 VAL TYR TYR CYS ALA ARG ASP LEU VAL VAL TYR GLY LEU SEQRES 9 H 230 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 230 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 230 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 230 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 230 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 230 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 230 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 230 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 230 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 18 H 230 LYS THR GLY HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET SO4 L 301 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *173(H2 O) HELIX 1 AA1 PHE R 338 ASN R 343 1 6 HELIX 2 AA2 SER R 349 TRP R 353 5 5 HELIX 3 AA3 TYR R 365 ASN R 370 1 6 HELIX 4 AA4 LYS R 386 ASP R 389 5 4 HELIX 5 AA5 ASP R 405 ILE R 410 5 6 HELIX 6 AA6 GLY R 416 ASN R 422 1 7 HELIX 7 AA7 SER R 438 SER R 443 1 6 HELIX 8 AA8 GLY R 502 TYR R 505 5 4 HELIX 9 AA9 PRO R 527 SER R 530 5 4 HELIX 10 AB1 GLN L 81 PHE L 85 5 5 HELIX 11 AB2 SER L 124 GLY L 131 1 8 HELIX 12 AB3 LYS L 186 GLU L 190 1 5 HELIX 13 AB4 ILE H 28 ASN H 32 5 5 HELIX 14 AB5 ARG H 86 THR H 90 5 5 HELIX 15 AB6 SER H 160 ALA H 162 5 3 HELIX 16 AB7 SER H 191 GLN H 196 1 6 HELIX 17 AB8 LYS H 205 ASN H 208 5 4 SHEET 1 AA1 5 ASN R 354 ILE R 358 0 SHEET 2 AA1 5 ASN R 394 ARG R 403 -1 O VAL R 395 N ILE R 358 SHEET 3 AA1 5 PRO R 507 GLU R 516 -1 O TYR R 508 N ILE R 402 SHEET 4 AA1 5 GLY R 431 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 5 AA1 5 THR R 376 TYR R 380 -1 N LYS R 378 O VAL R 433 SHEET 1 AA2 3 CYS R 361 VAL R 362 0 SHEET 2 AA2 3 VAL R 524 CYS R 525 1 O CYS R 525 N CYS R 361 SHEET 3 AA2 3 CYS R 391 PHE R 392 -1 N PHE R 392 O VAL R 524 SHEET 1 AA3 2 LEU R 452 ARG R 454 0 SHEET 2 AA3 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AA4 2 TYR R 473 GLN R 474 0 SHEET 2 AA4 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SHEET 1 AA5 4 LEU L 4 SER L 7 0 SHEET 2 AA5 4 VAL L 19 ALA L 27 -1 O THR L 22 N SER L 7 SHEET 3 AA5 4 ASP L 72 ILE L 77 -1 O PHE L 73 N CYS L 25 SHEET 4 AA5 4 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AA6 6 SER L 10 SER L 14 0 SHEET 2 AA6 6 THR L 105 LYS L 110 1 O GLU L 108 N LEU L 11 SHEET 3 AA6 6 ALA L 86 HIS L 92 -1 N ALA L 86 O LEU L 107 SHEET 4 AA6 6 LEU L 35 GLN L 40 -1 N TYR L 38 O TYR L 89 SHEET 5 AA6 6 LYS L 47 PHE L 51 -1 O LEU L 49 N TRP L 37 SHEET 6 AA6 6 THR L 55 LEU L 56 -1 O THR L 55 N PHE L 51 SHEET 1 AA7 4 SER L 10 SER L 14 0 SHEET 2 AA7 4 THR L 105 LYS L 110 1 O GLU L 108 N LEU L 11 SHEET 3 AA7 4 ALA L 86 HIS L 92 -1 N ALA L 86 O LEU L 107 SHEET 4 AA7 4 THR L 100 PHE L 101 -1 O THR L 100 N HIS L 92 SHEET 1 AA8 4 SER L 117 PHE L 121 0 SHEET 2 AA8 4 THR L 132 PHE L 142 -1 O LEU L 138 N PHE L 119 SHEET 3 AA8 4 TYR L 176 SER L 185 -1 O LEU L 178 N LEU L 139 SHEET 4 AA8 4 SER L 162 VAL L 166 -1 N GLN L 163 O THR L 181 SHEET 1 AA9 4 ALA L 156 LEU L 157 0 SHEET 2 AA9 4 LYS L 148 VAL L 153 -1 N VAL L 153 O ALA L 156 SHEET 3 AA9 4 VAL L 194 THR L 200 -1 O GLU L 198 N GLN L 150 SHEET 4 AA9 4 VAL L 208 ASN L 213 -1 O LYS L 210 N CYS L 197 SHEET 1 AB1 4 GLN H 3 SER H 7 0 SHEET 2 AB1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AB1 4 THR H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AB1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AB2 6 GLY H 10 ILE H 12 0 SHEET 2 AB2 6 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AB2 6 ALA H 91 ASP H 98 -1 N ALA H 91 O VAL H 113 SHEET 4 AB2 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AB2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AB2 6 THR H 57 TYR H 59 -1 O PHE H 58 N LEU H 50 SHEET 1 AB3 4 GLY H 10 ILE H 12 0 SHEET 2 AB3 4 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AB3 4 ALA H 91 ASP H 98 -1 N ALA H 91 O VAL H 113 SHEET 4 AB3 4 LEU H 104 TRP H 107 -1 O TYR H 106 N ARG H 97 SHEET 1 AB4 4 SER H 124 LEU H 128 0 SHEET 2 AB4 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AB4 4 TYR H 180 PRO H 189 -1 O VAL H 188 N ALA H 140 SHEET 4 AB4 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AB5 4 SER H 124 LEU H 128 0 SHEET 2 AB5 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AB5 4 TYR H 180 PRO H 189 -1 O VAL H 188 N ALA H 140 SHEET 4 AB5 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB6 3 THR H 155 TRP H 158 0 SHEET 2 AB6 3 ILE H 199 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB6 3 THR H 209 ARG H 214 -1 O VAL H 211 N VAL H 202 SSBOND 1 CYS R 336 CYS R 361 1555 1555 2.05 SSBOND 2 CYS R 379 CYS R 432 1555 1555 2.09 SSBOND 3 CYS R 391 CYS R 525 1555 1555 2.04 SSBOND 4 CYS R 480 CYS R 488 1555 1555 2.09 SSBOND 5 CYS L 25 CYS L 90 1555 1555 2.12 SSBOND 6 CYS L 137 CYS L 197 1555 1555 2.05 SSBOND 7 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 8 CYS H 144 CYS H 200 1555 1555 2.05 LINK ND2 ASN R 343 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 -3.06 CISPEP 2 TYR L 143 PRO L 144 0 3.11 CISPEP 3 PHE H 150 PRO H 151 0 -4.17 CISPEP 4 GLU H 152 PRO H 153 0 -1.28 CRYST1 87.297 102.943 114.341 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008746 0.00000