HEADER TRANSPORT PROTEIN 30-JAN-22 7WSN TITLE CRYO-EM STRUCTURE OF HUMAN GLUCOSE TRANSPORTER GLUT4 BOUND TO TITLE 2 CYTOCHALASIN B IN DETERGENT MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER COMPND 3 MEMBER 4; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GLUCOSE TRANSPORTER TYPE 4,INSULIN-RESPONSIVE,GLUT-4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC2A4, GLUT4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS GLUCOSE TRANSPORTER, GLUT4, DIABETES, CYTOCHALASIN B, TRANSPORT KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.YUAN,F.KONG,H.XU,A.ZHU,N.YAN,C.YAN REVDAT 2 25-MAY-22 7WSN 1 JRNL REVDAT 1 18-MAY-22 7WSN 0 JRNL AUTH Y.YUAN,F.KONG,H.XU,A.ZHU,N.YAN,C.YAN JRNL TITL CRYO-EM STRUCTURE OF HUMAN GLUCOSE TRANSPORTER GLUT4. JRNL REF NAT COMMUN V. 13 2671 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35562357 JRNL DOI 10.1038/S41467-022-30235-5 REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.310 REMARK 3 NUMBER OF PARTICLES : 260000 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7WSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027363. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GLUT4 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.80 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ASP A -9 REMARK 465 TYR A -8 REMARK 465 LYS A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 LYS A -2 REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 PHE A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 ILE A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 GLN A 17 REMARK 465 GLN A 18 REMARK 465 ARG A 19 REMARK 465 VAL A 20 REMARK 465 HIS A 484 REMARK 465 ARG A 485 REMARK 465 THR A 486 REMARK 465 PRO A 487 REMARK 465 SER A 488 REMARK 465 LEU A 489 REMARK 465 LEU A 490 REMARK 465 GLU A 491 REMARK 465 GLN A 492 REMARK 465 GLU A 493 REMARK 465 VAL A 494 REMARK 465 LYS A 495 REMARK 465 PRO A 496 REMARK 465 SER A 497 REMARK 465 THR A 498 REMARK 465 GLU A 499 REMARK 465 LEU A 500 REMARK 465 GLU A 501 REMARK 465 TYR A 502 REMARK 465 LEU A 503 REMARK 465 GLY A 504 REMARK 465 PRO A 505 REMARK 465 ASP A 506 REMARK 465 GLU A 507 REMARK 465 ASN A 508 REMARK 465 ASP A 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 48 1.70 -68.84 REMARK 500 GLN A 64 -62.67 -90.12 REMARK 500 GLU A 67 32.31 -95.67 REMARK 500 SER A 71 141.61 -171.06 REMARK 500 THR A 198 -169.08 -129.06 REMARK 500 PRO A 221 -7.37 -52.53 REMARK 500 ILE A 233 -61.98 -97.48 REMARK 500 ASN A 235 -3.75 71.29 REMARK 500 LEU A 247 -60.45 -94.38 REMARK 500 LEU A 300 -6.33 -59.06 REMARK 500 ILE A 397 -61.81 -95.41 REMARK 500 SER A 412 -175.95 -69.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-32760 RELATED DB: EMDB REMARK 900 RELATED ID: 7WSM RELATED DB: PDB REMARK 900 RELATED ID: EMD-32761 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN GLUCOSE TRANSPORTER GLUT4 BOUND TO REMARK 900 CYTOCHALASIN B IN DETERGENT MICELLES DBREF 7WSN A 1 509 UNP P14672 GLUT4_HUMAN 1 509 SEQADV 7WSN MET A -10 UNP P14672 INITIATING METHIONINE SEQADV 7WSN ASP A -9 UNP P14672 EXPRESSION TAG SEQADV 7WSN TYR A -8 UNP P14672 EXPRESSION TAG SEQADV 7WSN LYS A -7 UNP P14672 EXPRESSION TAG SEQADV 7WSN ASP A -6 UNP P14672 EXPRESSION TAG SEQADV 7WSN ASP A -5 UNP P14672 EXPRESSION TAG SEQADV 7WSN ASP A -4 UNP P14672 EXPRESSION TAG SEQADV 7WSN ASP A -3 UNP P14672 EXPRESSION TAG SEQADV 7WSN LYS A -2 UNP P14672 EXPRESSION TAG SEQADV 7WSN GLY A -1 UNP P14672 EXPRESSION TAG SEQADV 7WSN THR A 0 UNP P14672 EXPRESSION TAG SEQRES 1 A 520 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY THR MET PRO SEQRES 2 A 520 SER GLY PHE GLN GLN ILE GLY SER GLU ASP GLY GLU PRO SEQRES 3 A 520 PRO GLN GLN ARG VAL THR GLY THR LEU VAL LEU ALA VAL SEQRES 4 A 520 PHE SER ALA VAL LEU GLY SER LEU GLN PHE GLY TYR ASN SEQRES 5 A 520 ILE GLY VAL ILE ASN ALA PRO GLN LYS VAL ILE GLU GLN SEQRES 6 A 520 SER TYR ASN GLU THR TRP LEU GLY ARG GLN GLY PRO GLU SEQRES 7 A 520 GLY PRO SER SER ILE PRO PRO GLY THR LEU THR THR LEU SEQRES 8 A 520 TRP ALA LEU SER VAL ALA ILE PHE SER VAL GLY GLY MET SEQRES 9 A 520 ILE SER SER PHE LEU ILE GLY ILE ILE SER GLN TRP LEU SEQRES 10 A 520 GLY ARG LYS ARG ALA MET LEU VAL ASN ASN VAL LEU ALA SEQRES 11 A 520 VAL LEU GLY GLY SER LEU MET GLY LEU ALA ASN ALA ALA SEQRES 12 A 520 ALA SER TYR GLU MET LEU ILE LEU GLY ARG PHE LEU ILE SEQRES 13 A 520 GLY ALA TYR SER GLY LEU THR SER GLY LEU VAL PRO MET SEQRES 14 A 520 TYR VAL GLY GLU ILE ALA PRO THR HIS LEU ARG GLY ALA SEQRES 15 A 520 LEU GLY THR LEU ASN GLN LEU ALA ILE VAL ILE GLY ILE SEQRES 16 A 520 LEU ILE ALA GLN VAL LEU GLY LEU GLU SER LEU LEU GLY SEQRES 17 A 520 THR ALA SER LEU TRP PRO LEU LEU LEU GLY LEU THR VAL SEQRES 18 A 520 LEU PRO ALA LEU LEU GLN LEU VAL LEU LEU PRO PHE CYS SEQRES 19 A 520 PRO GLU SER PRO ARG TYR LEU TYR ILE ILE GLN ASN LEU SEQRES 20 A 520 GLU GLY PRO ALA ARG LYS SER LEU LYS ARG LEU THR GLY SEQRES 21 A 520 TRP ALA ASP VAL SER GLY VAL LEU ALA GLU LEU LYS ASP SEQRES 22 A 520 GLU LYS ARG LYS LEU GLU ARG GLU ARG PRO LEU SER LEU SEQRES 23 A 520 LEU GLN LEU LEU GLY SER ARG THR HIS ARG GLN PRO LEU SEQRES 24 A 520 ILE ILE ALA VAL VAL LEU GLN LEU SER GLN GLN LEU SER SEQRES 25 A 520 GLY ILE ASN ALA VAL PHE TYR TYR SER THR SER ILE PHE SEQRES 26 A 520 GLU THR ALA GLY VAL GLY GLN PRO ALA TYR ALA THR ILE SEQRES 27 A 520 GLY ALA GLY VAL VAL ASN THR VAL PHE THR LEU VAL SER SEQRES 28 A 520 VAL LEU LEU VAL GLU ARG ALA GLY ARG ARG THR LEU HIS SEQRES 29 A 520 LEU LEU GLY LEU ALA GLY MET CYS GLY CYS ALA ILE LEU SEQRES 30 A 520 MET THR VAL ALA LEU LEU LEU LEU GLU ARG VAL PRO ALA SEQRES 31 A 520 MET SER TYR VAL SER ILE VAL ALA ILE PHE GLY PHE VAL SEQRES 32 A 520 ALA PHE PHE GLU ILE GLY PRO GLY PRO ILE PRO TRP PHE SEQRES 33 A 520 ILE VAL ALA GLU LEU PHE SER GLN GLY PRO ARG PRO ALA SEQRES 34 A 520 ALA MET ALA VAL ALA GLY PHE SER ASN TRP THR SER ASN SEQRES 35 A 520 PHE ILE ILE GLY MET GLY PHE GLN TYR VAL ALA GLU ALA SEQRES 36 A 520 MET GLY PRO TYR VAL PHE LEU LEU PHE ALA VAL LEU LEU SEQRES 37 A 520 LEU GLY PHE PHE ILE PHE THR PHE LEU ARG VAL PRO GLU SEQRES 38 A 520 THR ARG GLY ARG THR PHE ASP GLN ILE SER ALA ALA PHE SEQRES 39 A 520 HIS ARG THR PRO SER LEU LEU GLU GLN GLU VAL LYS PRO SEQRES 40 A 520 SER THR GLU LEU GLU TYR LEU GLY PRO ASP GLU ASN ASP HET NAG B 1 14 HET NAG B 2 14 HET 5RH A 601 35 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 5RH CYTOCHALASIN B HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 5RH C29 H37 N O5 HELIX 1 AA1 THR A 21 VAL A 44 1 24 HELIX 2 AA2 PRO A 48 ARG A 63 1 16 HELIX 3 AA3 PRO A 73 GLY A 107 1 35 HELIX 4 AA4 ARG A 108 LEU A 128 1 21 HELIX 5 AA5 LEU A 128 ALA A 133 1 6 HELIX 6 AA6 TYR A 135 ALA A 164 1 30 HELIX 7 AA7 LEU A 168 THR A 174 1 7 HELIX 8 AA8 THR A 174 LEU A 190 1 17 HELIX 9 AA9 TRP A 202 LEU A 220 1 19 HELIX 10 AB1 PRO A 221 CYS A 223 5 3 HELIX 11 AB2 SER A 226 ILE A 233 1 8 HELIX 12 AB3 GLU A 237 GLY A 249 1 13 HELIX 13 AB4 VAL A 253 GLU A 270 1 18 HELIX 14 AB5 SER A 274 SER A 281 1 8 HELIX 15 AB6 ARG A 285 SER A 301 1 17 HELIX 16 AB7 GLY A 302 GLY A 318 1 17 HELIX 17 AB8 GLN A 321 VAL A 344 1 24 HELIX 18 AB9 GLU A 345 ALA A 347 5 3 HELIX 19 AC1 ARG A 349 LEU A 373 1 25 HELIX 20 AC2 VAL A 377 ALA A 379 5 3 HELIX 21 AC3 MET A 380 GLY A 398 1 19 HELIX 22 AC4 PRO A 401 LEU A 410 1 10 HELIX 23 AC5 PRO A 415 GLY A 446 1 32 HELIX 24 AC6 TYR A 448 VAL A 468 1 21 HELIX 25 AC7 THR A 475 PHE A 483 1 9 LINK ND2 ASN A 57 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000