HEADER IMMUNE SYSTEM 03-FEB-22 7WT3 TITLE CRYSTAL STRUCTURE OF HLA-A*2402 COMPLEXED WITH 4-MER LIPOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B, E; COMPND 8 SYNONYM: HB2M; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 4-MER LIPOPEPTIDE; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSSETA2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: ROSSETA2; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS MHC CLASS I, ANTIGEN PRESENTATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.ASA,D.MORITA,M.SUGITA REVDAT 4 29-NOV-23 7WT3 1 REMARK REVDAT 3 13-JUL-22 7WT3 1 SOURCE REVDAT 2 06-JUL-22 7WT3 1 JRNL REVDAT 1 22-JUN-22 7WT3 0 JRNL AUTH M.ASA,D.MORITA,J.KUROHA,T.MIZUTANI,N.MORI,B.MIKAMI,M.SUGITA JRNL TITL CRYSTAL STRUCTURES OF N-MYRISTOYLATED LIPOPEPTIDE-BOUND HLA JRNL TITL 2 CLASS I COMPLEXES INDICATE REORGANIZATION OF B-POCKET JRNL TITL 3 ARCHITECTURE UPON LIGAND BINDING. JRNL REF J.BIOL.CHEM. V. 298 02100 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35667438 JRNL DOI 10.1016/J.JBC.2022.102100 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.348 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 89123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0759 - 5.8603 0.99 2954 155 0.2209 0.2676 REMARK 3 2 5.8603 - 4.6534 0.99 2873 151 0.1837 0.1763 REMARK 3 3 4.6534 - 4.0657 0.99 2853 151 0.1646 0.2045 REMARK 3 4 4.0657 - 3.6942 1.00 2870 151 0.1734 0.2009 REMARK 3 5 3.6942 - 3.4296 1.00 2836 149 0.1867 0.2434 REMARK 3 6 3.4296 - 3.2275 1.00 2839 149 0.2015 0.2497 REMARK 3 7 3.2275 - 3.0659 0.99 2802 148 0.2013 0.2346 REMARK 3 8 3.0659 - 2.9324 1.00 2829 149 0.2027 0.2242 REMARK 3 9 2.9324 - 2.8196 1.00 2819 148 0.2057 0.2266 REMARK 3 10 2.8196 - 2.7223 1.00 2788 147 0.2026 0.2423 REMARK 3 11 2.7223 - 2.6372 1.00 2876 151 0.2113 0.2591 REMARK 3 12 2.6372 - 2.5618 1.00 2779 146 0.1946 0.2390 REMARK 3 13 2.5618 - 2.4944 1.00 2819 149 0.2065 0.2453 REMARK 3 14 2.4944 - 2.4335 1.00 2817 148 0.2042 0.2580 REMARK 3 15 2.4335 - 2.3782 1.00 2846 150 0.2048 0.2344 REMARK 3 16 2.3782 - 2.3276 1.00 2801 147 0.2027 0.2462 REMARK 3 17 2.3276 - 2.2811 1.00 2833 149 0.2039 0.2336 REMARK 3 18 2.2811 - 2.2380 1.00 2786 147 0.1976 0.2304 REMARK 3 19 2.2380 - 2.1980 1.00 2795 147 0.2004 0.2301 REMARK 3 20 2.1980 - 2.1608 1.00 2858 151 0.2053 0.2490 REMARK 3 21 2.1608 - 2.1259 1.00 2772 145 0.2106 0.2672 REMARK 3 22 2.1259 - 2.0932 1.00 2819 149 0.2083 0.2576 REMARK 3 23 2.0932 - 2.0624 1.00 2844 149 0.2174 0.2561 REMARK 3 24 2.0624 - 2.0334 1.00 2764 146 0.2146 0.2354 REMARK 3 25 2.0334 - 2.0059 1.00 2800 147 0.2195 0.2704 REMARK 3 26 2.0059 - 1.9799 1.00 2807 148 0.2206 0.2511 REMARK 3 27 1.9799 - 1.9551 1.00 2806 148 0.2336 0.3255 REMARK 3 28 1.9551 - 1.9316 1.00 2755 145 0.2427 0.2996 REMARK 3 29 1.9316 - 1.9091 1.00 2868 151 0.2620 0.2760 REMARK 3 30 1.9091 - 1.8877 0.98 2759 145 0.3129 0.3297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.033 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5949 REMARK 3 ANGLE : 1.243 7971 REMARK 3 CHIRALITY : 0.053 794 REMARK 3 PLANARITY : 0.007 1041 REMARK 3 DIHEDRAL : 14.028 2221 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.888 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4F7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM ZNCL2, 100MM TRIS, 20% PEG 6000, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.20500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO D 184 REMARK 465 PRO D 185 REMARK 465 LYS D 186 REMARK 465 THR D 187 REMARK 465 HIS D 188 REMARK 465 MET D 189 REMARK 465 THR D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 PRO D 193 REMARK 465 ILE D 194 REMARK 465 SER D 195 REMARK 465 ASP D 196 REMARK 465 HIS D 197 REMARK 465 GLU D 198 REMARK 465 ALA D 199 REMARK 465 THR D 200 REMARK 465 LEU D 201 REMARK 465 LEU D 206 REMARK 465 GLY D 207 REMARK 465 PHE D 208 REMARK 465 THR D 216 REMARK 465 TRP D 217 REMARK 465 GLN D 218 REMARK 465 ARG D 219 REMARK 465 ASP D 220 REMARK 465 GLY D 221 REMARK 465 GLU D 222 REMARK 465 ASP D 223 REMARK 465 GLN D 224 REMARK 465 THR D 225 REMARK 465 GLN D 226 REMARK 465 ASP D 227 REMARK 465 THR D 228 REMARK 465 GLU D 229 REMARK 465 ALA D 245 REMARK 465 ALA D 246 REMARK 465 VAL D 247 REMARK 465 VAL D 248 REMARK 465 VAL D 249 REMARK 465 PRO D 250 REMARK 465 SER D 251 REMARK 465 GLY D 252 REMARK 465 GLU D 253 REMARK 465 GLU D 254 REMARK 465 GLN D 255 REMARK 465 ARG D 256 REMARK 465 TYR D 257 REMARK 465 THR D 258 REMARK 465 CYS D 259 REMARK 465 HIS D 260 REMARK 465 VAL D 261 REMARK 465 GLN D 262 REMARK 465 HIS D 263 REMARK 465 GLU D 264 REMARK 465 GLY D 265 REMARK 465 LEU D 266 REMARK 465 PRO D 267 REMARK 465 LYS D 268 REMARK 465 PRO D 269 REMARK 465 LEU D 270 REMARK 465 THR D 271 REMARK 465 LEU D 272 REMARK 465 ARG D 273 REMARK 465 TRP D 274 REMARK 465 GLU D 275 REMARK 465 PRO D 276 REMARK 465 ALA E 0 REMARK 465 ALA E 15 REMARK 465 GLU E 16 REMARK 465 ASN E 17 REMARK 465 GLY E 18 REMARK 465 LEU E 40 REMARK 465 LYS E 41 REMARK 465 ASN E 42 REMARK 465 GLU E 74 REMARK 465 LYS E 75 REMARK 465 ASP E 76 REMARK 465 GLU E 77 REMARK 465 TYR E 78 REMARK 465 ALA E 79 REMARK 465 ASP E 96 REMARK 465 ARG E 97 REMARK 465 ASP E 98 REMARK 465 MET E 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -127.02 53.20 REMARK 500 ASP D 29 -123.77 54.23 REMARK 500 HIS D 114 107.80 -162.04 REMARK 500 TYR D 123 -64.36 -109.56 REMARK 500 GLN D 180 39.64 -89.27 REMARK 500 ASN E 21 -158.39 -134.22 REMARK 500 LYS E 48 38.76 -99.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 0 N REMARK 620 2 ALA A 0 O 80.1 REMARK 620 3 HIS A 3 NE2 104.2 101.5 REMARK 620 4 GLN A 180 OE1 87.7 166.5 87.0 REMARK 620 5 GLU A 222 OE1 45.4 37.8 94.4 132.0 REMARK 620 6 GLU A 222 OE2 44.7 37.7 96.3 131.7 1.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ALA D 0 N 54.9 REMARK 620 3 ALA D 0 O 51.9 3.1 REMARK 620 4 HIS D 3 NE2 53.5 4.6 3.9 REMARK 620 5 HOH D 443 O 54.9 2.3 3.3 2.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 197 NE2 REMARK 620 2 EDO A 309 O1 76.0 REMARK 620 3 EDO A 309 O2 107.7 75.3 REMARK 620 4 GLU D 154 OE1 42.5 117.2 107.4 REMARK 620 5 GLU D 154 OE1 42.4 117.1 107.6 0.3 REMARK 620 N 1 2 3 4 DBREF1 7WT3 A 0 276 UNP A0A411J078_HUMAN DBREF2 7WT3 A A0A411J078 24 300 DBREF 7WT3 B 0 99 UNP P61769 B2MG_HUMAN 20 119 DBREF 7WT3 C 1 5 PDB 7WT3 7WT3 1 5 DBREF1 7WT3 D 0 276 UNP A0A411J078_HUMAN DBREF2 7WT3 D A0A411J078 24 300 DBREF 7WT3 E 0 99 UNP P61769 B2MG_HUMAN 20 119 DBREF 7WT3 F 1 5 PDB 7WT3 7WT3 1 5 SEQRES 1 A 277 ALA GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SEQRES 2 A 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 277 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR SEQRES 6 A 277 GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN SEQRES 7 A 277 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL SEQRES 9 A 277 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 277 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 A 277 THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 277 GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU SEQRES 14 A 277 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 277 THR ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SEQRES 16 A 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 277 ARG TRP GLU PRO SEQRES 1 B 100 ALA ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 5 MYR GLY ALA ASN PHE SEQRES 1 D 277 ALA GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SEQRES 2 D 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 D 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 D 277 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 D 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR SEQRES 6 D 277 GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN SEQRES 7 D 277 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 D 277 GLY SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL SEQRES 9 D 277 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 D 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 D 277 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 D 277 THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 D 277 GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU SEQRES 14 D 277 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 D 277 THR ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SEQRES 16 D 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 D 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 D 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 D 277 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 D 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 D 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 D 277 ARG TRP GLU PRO SEQRES 1 E 100 ALA ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 5 MYR GLY ALA ASN PHE HET MYR C 1 15 HET MYR F 1 15 HET TRS A 301 8 HET ACT A 302 4 HET ACT A 303 4 HET ZN A 304 1 HET ZN A 305 1 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET EDO A 317 4 HET EDO A 318 4 HET EDO A 319 4 HET EDO A 320 4 HET EDO A 321 4 HET EDO A 322 4 HET EDO A 323 4 HET EDO B 101 4 HET EDO B 102 4 HET EDO B 103 4 HET EDO B 104 4 HET EDO B 105 4 HET EDO B 106 4 HET EDO B 107 4 HET EDO B 108 4 HET ACT D 301 4 HET ZN D 302 1 HET EDO D 303 4 HET EDO D 304 4 HET EDO D 305 4 HET EDO D 306 4 HET EDO D 307 4 HET EDO D 308 4 HET EDO D 309 4 HET EDO D 310 4 HET EDO D 311 4 HET EDO D 312 4 HET EDO E 101 4 HETNAM MYR MYRISTIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MYR 2(C14 H28 O2) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 10 ZN 3(ZN 2+) FORMUL 12 EDO 37(C2 H6 O2) FORMUL 51 HOH *403(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 ALA D 49 GLU D 55 5 7 HELIX 9 AA9 GLY D 56 ASN D 86 1 31 HELIX 10 AB1 ASP D 137 ALA D 150 1 14 HELIX 11 AB2 HIS D 151 GLY D 162 1 12 HELIX 12 AB3 GLY D 162 GLY D 175 1 14 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 SER A 2 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 GLY A 104 -1 O PHE A 99 N TYR A 7 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O LEU A 126 N HIS A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 SER D 2 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 THR D 94 GLY D 104 -1 O PHE D 99 N TYR D 7 SHEET 6 AA8 8 PHE D 109 TYR D 118 -1 O LEU D 110 N ASP D 102 SHEET 7 AA8 8 LYS D 121 LEU D 126 -1 O TYR D 123 N TYR D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 2 ARG D 234 PRO D 235 0 SHEET 2 AA9 2 PHE D 241 GLN D 242 -1 O GLN D 242 N ARG D 234 SHEET 1 AB1 4 LYS E 6 SER E 11 0 SHEET 2 AB1 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB1 4 PHE E 62 PHE E 70 -1 O PHE E 70 N ASN E 21 SHEET 4 AB1 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 AB2 4 LYS E 6 SER E 11 0 SHEET 2 AB2 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB2 4 PHE E 62 PHE E 70 -1 O PHE E 70 N ASN E 21 SHEET 4 AB2 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB3 3 GLU E 36 ASP E 38 0 SHEET 2 AB3 3 ARG E 81 ASN E 83 -1 O ARG E 81 N ASP E 38 SHEET 3 AB3 3 LYS E 91 ILE E 92 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.05 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.06 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.05 SSBOND 5 CYS E 25 CYS E 80 1555 1555 2.04 LINK C1 MYR C 1 N GLY C 2 1555 1555 1.35 LINK C1 MYR F 1 N GLY F 2 1555 1555 1.34 LINK N ALA A 0 ZN ZN A 305 1555 1555 1.99 LINK O ALA A 0 ZN ZN A 305 1555 1555 2.18 LINK NE2 HIS A 3 ZN ZN A 305 1555 1555 2.21 LINK NE2 HIS A 151 ZN ZN D 302 1555 1565 2.24 LINK OE1 GLN A 180 ZN ZN A 305 1555 1555 2.18 LINK NE2 HIS A 197 ZN ZN A 304 1555 1555 2.29 LINK OE1 GLU A 222 ZN ZN A 305 1555 2655 2.20 LINK OE2 GLU A 222 ZN ZN A 305 1555 2655 2.30 LINK ZN ZN A 304 O1 EDO A 309 1555 1555 2.31 LINK ZN ZN A 304 O2 EDO A 309 1555 1555 1.78 LINK ZN ZN A 304 OE1AGLU D 154 2645 1555 2.25 LINK ZN ZN A 304 OE1BGLU D 154 2645 1555 2.28 LINK N ALA D 0 ZN ZN D 302 1555 1555 1.92 LINK O ALA D 0 ZN ZN D 302 1555 1555 2.17 LINK NE2 HIS D 3 ZN ZN D 302 1555 1555 2.19 LINK ZN ZN D 302 O HOH D 443 1555 1555 2.05 CISPEP 1 TYR A 209 PRO A 210 0 -1.59 CISPEP 2 HIS B 31 PRO B 32 0 2.55 CISPEP 3 TYR D 209 PRO D 210 0 4.33 CISPEP 4 HIS E 31 PRO E 32 0 4.74 CRYST1 87.069 46.410 142.670 90.00 104.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011485 0.000000 0.003050 0.00000 SCALE2 0.000000 0.021547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007252 0.00000