HEADER OXIDOREDUCTASE 15-FEB-22 7WY4 TITLE STRUCTURE OF THE CYP102A1 F87A HAEM DOMAIN WITH N-ENANTHYL-L-PROLYL-L- TITLE 2 PHENYLALANINE IN COMPLEX WITH STYRENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYTOCHROME P450/NADPH--P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.1,1.6.2.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRIESTIA MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: BTA37_15100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SUZUKI,J.K.STANFIELD,Y.SHISAKA,K.OMURA,C.KASAI,H.SUGIMOTO,O.SHOJI REVDAT 5 29-NOV-23 7WY4 1 REMARK REVDAT 4 03-MAY-23 7WY4 1 JRNL REVDAT 3 29-MAR-23 7WY4 1 JRNL REVDAT 2 15-FEB-23 7WY4 1 JRNL REVDAT 1 04-JAN-23 7WY4 0 JRNL AUTH K.SUZUKI,J.K.STANFIELD,K.OMURA,Y.SHISAKA,S.ARIYASU,C.KASAI, JRNL AUTH 2 Y.AIBA,H.SUGIMOTO,O.SHOJI JRNL TITL A COMPOUND I MIMIC REVEALS THE TRANSIENT ACTIVE SPECIES OF A JRNL TITL 2 CYTOCHROME P450 ENZYME: INSIGHT INTO THE STEREOSELECTIVITY JRNL TITL 3 OF P450-CATALYSED OXIDATIONS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 15706 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 36519803 JRNL DOI 10.1002/ANIE.202215706 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 187448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13723 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 749 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 270 REMARK 3 SOLVENT ATOMS : 875 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.634 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9394 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8677 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12846 ; 1.527 ; 1.694 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20306 ; 1.433 ; 1.619 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1173 ; 6.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 494 ;33.440 ;23.664 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1668 ;12.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1141 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10828 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1946 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 18071 ; 1.492 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 187448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.761 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.26 REMARK 200 R MERGE FOR SHELL (I) : 1.67700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WSP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MAGNESIUM CHLORIDE, TRIS-HCL, REMARK 280 BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -126.38 55.40 REMARK 500 ASP A 84 38.31 -99.35 REMARK 500 PHE A 158 33.19 -147.82 REMARK 500 ASP A 231 46.63 -87.94 REMARK 500 THR A 268 -66.15 -102.04 REMARK 500 GLU A 344 -32.84 -133.59 REMARK 500 GLU A 344 -4.42 -148.83 REMARK 500 ASP A 370 31.30 -87.22 REMARK 500 THR A 436 -127.62 -117.86 REMARK 500 LYS B 15 -127.59 56.09 REMARK 500 PHE B 158 44.49 -155.96 REMARK 500 ASN B 159 43.82 38.08 REMARK 500 ASP B 231 49.02 -103.35 REMARK 500 THR B 268 -70.19 -99.89 REMARK 500 GLU B 344 -33.16 -130.87 REMARK 500 GLU B 344 9.83 -150.06 REMARK 500 LYS B 349 128.75 -39.56 REMARK 500 THR B 436 -124.70 -121.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1062 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 100.7 REMARK 620 3 HEM A 501 NB 89.6 87.6 REMARK 620 4 HEM A 501 NC 95.3 163.4 88.3 REMARK 620 5 HEM A 501 ND 100.8 90.0 169.7 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 101.8 REMARK 620 3 HEM A 501 NB 90.0 88.0 REMARK 620 4 HEM A 501 NC 95.2 162.4 87.7 REMARK 620 5 HEM A 501 ND 101.3 90.5 168.7 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 100.4 REMARK 620 3 HEM B 501 NB 89.0 87.4 REMARK 620 4 HEM B 501 NC 90.6 168.5 89.4 REMARK 620 5 HEM B 501 ND 100.9 89.8 170.0 91.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 100.1 REMARK 620 3 HEM B 501 NB 89.2 88.0 REMARK 620 4 HEM B 501 NC 90.3 169.4 90.0 REMARK 620 5 HEM B 501 ND 100.0 89.4 170.8 91.0 REMARK 620 N 1 2 3 4 DBREF1 7WY4 A 0 455 UNP A0A1Q8UP87_BACME DBREF2 7WY4 A A0A1Q8UP87 1 456 DBREF1 7WY4 B 0 455 UNP A0A1Q8UP87_BACME DBREF2 7WY4 B A0A1Q8UP87 1 456 SEQADV 7WY4 ALA A 87 UNP A0A1Q8UP8 PHE 88 ENGINEERED MUTATION SEQADV 7WY4 ALA B 87 UNP A0A1Q8UP8 PHE 88 ENGINEERED MUTATION SEQRES 1 A 456 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 A 456 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 A 456 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 A 456 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 A 456 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 A 456 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 A 456 VAL ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER TRP SEQRES 8 A 456 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 A 456 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 A 456 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 A 456 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 A 456 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 A 456 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 A 456 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 A 456 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 A 456 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 A 456 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 A 456 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 A 456 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 A 456 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 A 456 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 A 456 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 A 456 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 A 456 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 A 456 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 A 456 TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU SEQRES 27 A 456 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 A 456 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 A 456 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 A 456 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 A 456 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 A 456 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 A 456 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 A 456 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 A 456 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 A 456 LEU SEQRES 1 B 456 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 B 456 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 B 456 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 B 456 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 B 456 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 B 456 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 B 456 VAL ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER TRP SEQRES 8 B 456 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 B 456 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 B 456 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 B 456 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 B 456 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 B 456 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 B 456 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 B 456 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 B 456 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 B 456 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 B 456 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 B 456 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 B 456 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 B 456 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 B 456 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 B 456 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 B 456 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 B 456 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 B 456 TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU SEQRES 27 B 456 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 B 456 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 B 456 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 B 456 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 B 456 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 B 456 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 B 456 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 B 456 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 B 456 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 B 456 LEU HET HEM A 501 86 HET D0L A 502 26 HET SYN A 503 8 HET CL A 504 1 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 12 HET GOL A 509 6 HET GOL A 510 12 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET HEM B 501 86 HET D0L B 502 52 HET SYN B 503 16 HET CL B 504 1 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 12 HET GOL B 508 12 HET GOL B 509 12 HET GOL B 510 6 HET GOL B 511 6 HET GOL B 512 6 HET GOL B 513 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM D0L (2S)-2-[[(2S)-1-HEPTYLPYRROLIDIN-2-YL]CARBONYLAMINO]-3- HETNAM 2 D0L PHENYL-PROPANOIC ACID HETNAM SYN ETHENYLBENZENE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN SYN STYRENE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 D0L 2(C21 H32 N2 O3) FORMUL 5 SYN 2(C8 H8) FORMUL 6 CL 2(CL 1-) FORMUL 7 GOL 19(C3 H8 O3) FORMUL 30 HOH *875(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLY A 85 SER A 89 5 5 HELIX 7 AA7 GLU A 93 LEU A 104 1 12 HELIX 8 AA8 PRO A 105 PHE A 107 5 3 HELIX 9 AA9 SER A 108 ARG A 132 1 25 HELIX 10 AB1 VAL A 141 ASN A 159 1 19 HELIX 11 AB2 ASN A 163 ARG A 167 5 5 HELIX 12 AB3 HIS A 171 LYS A 187 1 17 HELIX 13 AB4 LEU A 188 ARG A 190 5 3 HELIX 14 AB5 ASP A 195 ALA A 197 5 3 HELIX 15 AB6 TYR A 198 GLY A 227 1 30 HELIX 16 AB7 ASP A 232 GLY A 240 1 9 HELIX 17 AB8 ASP A 250 THR A 268 1 19 HELIX 18 AB9 THR A 268 ASN A 283 1 16 HELIX 19 AC1 ASN A 283 LEU A 298 1 16 HELIX 20 AC2 SER A 304 GLN A 310 1 7 HELIX 21 AC3 LEU A 311 TRP A 325 1 15 HELIX 22 AC4 ILE A 357 HIS A 361 1 5 HELIX 23 AC5 ASP A 363 GLY A 368 1 6 HELIX 24 AC6 ARG A 375 GLU A 380 5 6 HELIX 25 AC7 ASN A 381 ILE A 385 5 5 HELIX 26 AC8 ASN A 395 ALA A 399 5 5 HELIX 27 AC9 GLY A 402 HIS A 420 1 19 HELIX 28 AD1 PHE B 11 LYS B 15 5 5 HELIX 29 AD2 ASN B 16 ASN B 21 5 6 HELIX 30 AD3 LYS B 24 GLY B 37 1 14 HELIX 31 AD4 SER B 54 CYS B 62 1 9 HELIX 32 AD5 SER B 72 GLY B 83 1 12 HELIX 33 AD6 GLY B 85 SER B 89 5 5 HELIX 34 AD7 GLU B 93 LEU B 104 1 12 HELIX 35 AD8 PRO B 105 PHE B 107 5 3 HELIX 36 AD9 SER B 108 ARG B 132 1 25 HELIX 37 AE1 VAL B 141 ASN B 159 1 19 HELIX 38 AE2 ASN B 163 ARG B 167 5 5 HELIX 39 AE3 HIS B 171 LYS B 187 1 17 HELIX 40 AE4 LEU B 188 ARG B 190 5 3 HELIX 41 AE5 ASP B 195 ALA B 197 5 3 HELIX 42 AE6 TYR B 198 GLY B 227 1 30 HELIX 43 AE7 ASP B 232 GLY B 240 1 9 HELIX 44 AE8 ASP B 250 THR B 268 1 19 HELIX 45 AE9 THR B 268 ASN B 283 1 16 HELIX 46 AF1 ASN B 283 LEU B 298 1 16 HELIX 47 AF2 SER B 304 GLN B 310 1 7 HELIX 48 AF3 LEU B 311 TRP B 325 1 15 HELIX 49 AF4 ILE B 357 HIS B 361 1 5 HELIX 50 AF5 ASP B 363 GLY B 368 1 6 HELIX 51 AF6 ARG B 375 GLU B 380 5 6 HELIX 52 AF7 ASN B 381 ILE B 385 5 5 HELIX 53 AF8 ASN B 395 ALA B 399 5 5 HELIX 54 AF9 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 AA1 5 PHE A 67 ASN A 70 -1 N ASP A 68 O TYR A 334 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 ALA B 44 0 SHEET 2 AA5 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O MET B 354 N LEU B 52 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 AA5 5 PHE B 67 ASN B 70 -1 N ASP B 68 O TYR B 334 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N GLU B 424 O LYS B 447 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE AHEM A 501 1555 1555 2.39 LINK SG CYS A 400 FE BHEM A 501 1555 1555 2.37 LINK SG CYS B 400 FE AHEM B 501 1555 1555 2.37 LINK SG CYS B 400 FE BHEM B 501 1555 1555 2.38 CRYST1 58.970 126.650 148.750 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006723 0.00000