HEADER OXIDOREDUCTASE 24-FEB-22 7X1X TITLE CRYSTAL STRUCTURE OF CIS-4,5-DIHYDRODIOL PHTHALATE DEHYDROGENASE IN TITLE 2 COMPLEX WITH NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4,5-DIHYDROXYPHTHALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI KF-1; SOURCE 3 ORGANISM_TAXID: 399795; SOURCE 4 GENE: O987_21845; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHYDROGENASE, BACTERIAL PROTEIN, NAD COFACTOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,J.K.MAHTO,P.KUMAR REVDAT 2 29-NOV-23 7X1X 1 REMARK REVDAT 1 14-SEP-22 7X1X 0 JRNL AUTH J.K.MAHTO,M.SHARMA,N.NEETU,A.KAYASTHA,S.AGGARWAL,P.KUMAR JRNL TITL CONFORMATIONAL FLEXIBILITY ENABLES CATALYSIS OF PHTHALATE JRNL TITL 2 CIS-4,5-DIHYDRODIOL DEHYDROGENASE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 727 09314 2022 JRNL REFN ESSN 1096-0384 JRNL PMID 35667443 JRNL DOI 10.1016/J.ABB.2022.109314 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50000 REMARK 3 B22 (A**2) : 4.94000 REMARK 3 B33 (A**2) : -3.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.408 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.374 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5505 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7493 ; 1.783 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 670 ; 7.755 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;31.321 ;20.588 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;21.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;23.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4276 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 391 B 4 391 11222 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9894 2.5950 -39.4809 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: 0.2600 REMARK 3 T33: 0.0686 T12: 0.0015 REMARK 3 T13: -0.0083 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.2865 L22: 0.1335 REMARK 3 L33: 4.5228 L12: -0.3003 REMARK 3 L13: -2.0286 L23: 0.5262 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.0689 S13: -0.0664 REMARK 3 S21: 0.0091 S22: 0.0130 S23: -0.0670 REMARK 3 S31: 0.1054 S32: 0.1409 S33: -0.0527 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 391 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9262 2.5058 -2.6734 REMARK 3 T TENSOR REMARK 3 T11: 0.0045 T22: 0.2270 REMARK 3 T33: 0.0559 T12: -0.0127 REMARK 3 T13: -0.0102 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.3718 L22: 0.1343 REMARK 3 L33: 4.4641 L12: 0.2137 REMARK 3 L13: -2.0211 L23: -0.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0234 S13: -0.0888 REMARK 3 S21: -0.0193 S22: 0.0567 S23: 0.0620 REMARK 3 S31: 0.0993 S32: -0.2295 S33: -0.0617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7X1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 46.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M AMMONIUM PHOSPHATE REMARK 280 DIBASIC, 100MM TRIS BUFFER PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.03500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 164 REMARK 465 ARG A 165 REMARK 465 PRO A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 ARG A 170 REMARK 465 THR A 171 REMARK 465 GLU A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 258 REMARK 465 ALA A 259 REMARK 465 TYR A 260 REMARK 465 GLY A 261 REMARK 465 ALA A 262 REMARK 465 ALA A 263 REMARK 465 ARG A 264 REMARK 465 ARG A 265 REMARK 465 LYS A 266 REMARK 465 LEU A 267 REMARK 465 ALA A 268 REMARK 465 THR A 269 REMARK 465 VAL A 270 REMARK 465 GLY A 271 REMARK 465 SER A 272 REMARK 465 ALA A 273 REMARK 465 GLN A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 ASN A 278 REMARK 465 LEU A 279 REMARK 465 LYS A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 THR A 284 REMARK 465 TYR A 285 REMARK 465 GLY A 286 REMARK 465 GLY A 287 REMARK 465 PRO A 288 REMARK 465 GLY A 289 REMARK 465 TYR A 290 REMARK 465 VAL A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 THR A 295 REMARK 465 ASP A 296 REMARK 465 ALA A 297 REMARK 465 ARG A 392 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 ARG B 164 REMARK 465 ARG B 165 REMARK 465 PRO B 166 REMARK 465 GLU B 167 REMARK 465 GLU B 168 REMARK 465 LEU B 169 REMARK 465 ARG B 170 REMARK 465 THR B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 GLU B 258 REMARK 465 ALA B 259 REMARK 465 TYR B 260 REMARK 465 GLY B 261 REMARK 465 ALA B 262 REMARK 465 ALA B 263 REMARK 465 ARG B 264 REMARK 465 ARG B 265 REMARK 465 LYS B 266 REMARK 465 LEU B 267 REMARK 465 ALA B 268 REMARK 465 THR B 269 REMARK 465 VAL B 270 REMARK 465 GLY B 271 REMARK 465 SER B 272 REMARK 465 ALA B 273 REMARK 465 GLN B 274 REMARK 465 GLU B 275 REMARK 465 GLU B 276 REMARK 465 ALA B 277 REMARK 465 ASN B 278 REMARK 465 LEU B 279 REMARK 465 LYS B 280 REMARK 465 ALA B 281 REMARK 465 ALA B 282 REMARK 465 ALA B 283 REMARK 465 THR B 284 REMARK 465 TYR B 285 REMARK 465 GLY B 286 REMARK 465 GLY B 287 REMARK 465 PRO B 288 REMARK 465 GLY B 289 REMARK 465 TYR B 290 REMARK 465 VAL B 291 REMARK 465 ALA B 292 REMARK 465 ALA B 293 REMARK 465 ALA B 294 REMARK 465 THR B 295 REMARK 465 ASP B 296 REMARK 465 ALA B 297 REMARK 465 ARG B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 52 72.74 32.63 REMARK 500 PRO A 57 -73.15 -51.87 REMARK 500 MET A 100 -69.70 -27.87 REMARK 500 HIS A 125 101.22 -35.71 REMARK 500 THR A 195 -169.14 -119.26 REMARK 500 ARG A 211 73.05 -110.67 REMARK 500 HIS A 238 -81.89 -97.47 REMARK 500 LYS A 255 -75.50 -74.54 REMARK 500 SER A 256 -164.82 52.11 REMARK 500 ILE A 300 -176.63 -57.32 REMARK 500 ALA A 328 -155.63 -158.13 REMARK 500 LEU A 330 -84.39 109.03 REMARK 500 LYS A 332 137.24 -39.76 REMARK 500 LYS A 360 118.91 -35.51 REMARK 500 ARG B 52 73.32 32.65 REMARK 500 PRO B 57 -73.61 -52.90 REMARK 500 MET B 100 -69.47 -27.07 REMARK 500 HIS B 125 101.52 -33.18 REMARK 500 THR B 195 -169.22 -119.15 REMARK 500 ARG B 211 74.00 -110.88 REMARK 500 HIS B 238 -80.14 -96.41 REMARK 500 PRO B 299 96.14 -49.52 REMARK 500 ILE B 300 -178.87 -63.30 REMARK 500 LEU B 330 -84.27 -53.24 REMARK 500 ALA B 331 -132.72 -174.60 REMARK 500 LYS B 360 117.39 -34.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 385 LYS B 386 -146.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 672 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 673 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 674 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 675 DISTANCE = 7.78 ANGSTROMS DBREF 7X1X A 1 392 PDB 7X1X 7X1X 1 392 DBREF 7X1X B 1 392 PDB 7X1X 7X1X 1 392 SEQRES 1 A 392 MET ASN ALA GLY HIS GLN LEU ARG LEU GLY VAL ALA GLY SEQRES 2 A 392 LEU GLY ARG ALA PHE THR LEU MET LEU PRO THR LEU GLN SEQRES 3 A 392 GLN ASP PRO ARG ILE LYS LEU VAL ALA ALA CYS ASP PRO SEQRES 4 A 392 ARG GLY SER ALA ARG ALA GLN PHE ALA SER ASP PHE ARG SEQRES 5 A 392 ALA PRO VAL TYR PRO ASP ILE GLU GLY LEU ALA SER ASN SEQRES 6 A 392 PRO ASP VAL GLU ALA ILE TYR ILE ALA SER PRO HIS GLN SEQRES 7 A 392 PHE HIS ALA GLN GLN ALA ARG ILE ALA ALA ARG HIS GLY SEQRES 8 A 392 LYS HIS VAL LEU VAL GLU LYS PRO MET ALA LEU SER LEU SEQRES 9 A 392 GLY ASP CYS ASP GLU MET ILE GLN HIS CYS ARG ASP ALA SEQRES 10 A 392 GLY VAL HIS LEU ILE VAL GLY HIS CYS HIS SER PHE ASP SEQRES 11 A 392 THR PRO TYR LEU SER ALA ARG GLU ILE VAL GLN SER GLY SEQRES 12 A 392 GLU LEU GLY PRO VAL ARG MET VAL HIS ALA LEU ASN TYR SEQRES 13 A 392 THR ASP PHE LEU TYR ARG PRO ARG ARG PRO GLU GLU LEU SEQRES 14 A 392 ARG THR GLU GLU GLY GLY GLY VAL VAL PHE SER GLN ALA SEQRES 15 A 392 ALA HIS GLN VAL ASP ILE VAL ARG LEU LEU VAL GLY THR SEQRES 16 A 392 ARG VAL ARG ARG VAL ARG ALA ILE THR GLY ASP TRP ASP SEQRES 17 A 392 PRO MET ARG PRO THR GLN GLY ALA TYR SER ALA LEU LEU SEQRES 18 A 392 TRP PHE GLU GLY GLY ALA PHE ALA SER ILE SER TYR ASN SEQRES 19 A 392 GLY TYR GLY HIS PHE ASP SER ASP GLU TRP CYS ASP TRP SEQRES 20 A 392 ILE GLY GLU MET GLY GLY ASP LYS SER PRO GLU ALA TYR SEQRES 21 A 392 GLY ALA ALA ARG ARG LYS LEU ALA THR VAL GLY SER ALA SEQRES 22 A 392 GLN GLU GLU ALA ASN LEU LYS ALA ALA ALA THR TYR GLY SEQRES 23 A 392 GLY PRO GLY TYR VAL ALA ALA ALA THR ASP ALA GLN PRO SEQRES 24 A 392 ILE TRP HIS GLN HIS PHE GLY PRO ILE VAL VAL SER CYS SEQRES 25 A 392 GLU ARG GLY ASP ILE ARG PRO LEU PRO ASP SER VAL CYS SEQRES 26 A 392 VAL TYR ALA ASP LEU ALA LYS GLU ARG ARG SER LEU GLN SEQRES 27 A 392 ARG PRO VAL VAL PRO ARG PHE GLU VAL ILE ASP GLU LEU SEQRES 28 A 392 TYR HIS ALA VAL VAL ASN GLU ILE LYS PRO LEU HIS ASP SEQRES 29 A 392 GLY VAL TRP ALA ARG ALA THR LEU GLU VAL CYS LEU ALA SEQRES 30 A 392 LEU LEU ASP SER ALA GLY SER GLY LYS ASP VAL GLU LEU SEQRES 31 A 392 PRO ARG SEQRES 1 B 392 MET ASN ALA GLY HIS GLN LEU ARG LEU GLY VAL ALA GLY SEQRES 2 B 392 LEU GLY ARG ALA PHE THR LEU MET LEU PRO THR LEU GLN SEQRES 3 B 392 GLN ASP PRO ARG ILE LYS LEU VAL ALA ALA CYS ASP PRO SEQRES 4 B 392 ARG GLY SER ALA ARG ALA GLN PHE ALA SER ASP PHE ARG SEQRES 5 B 392 ALA PRO VAL TYR PRO ASP ILE GLU GLY LEU ALA SER ASN SEQRES 6 B 392 PRO ASP VAL GLU ALA ILE TYR ILE ALA SER PRO HIS GLN SEQRES 7 B 392 PHE HIS ALA GLN GLN ALA ARG ILE ALA ALA ARG HIS GLY SEQRES 8 B 392 LYS HIS VAL LEU VAL GLU LYS PRO MET ALA LEU SER LEU SEQRES 9 B 392 GLY ASP CYS ASP GLU MET ILE GLN HIS CYS ARG ASP ALA SEQRES 10 B 392 GLY VAL HIS LEU ILE VAL GLY HIS CYS HIS SER PHE ASP SEQRES 11 B 392 THR PRO TYR LEU SER ALA ARG GLU ILE VAL GLN SER GLY SEQRES 12 B 392 GLU LEU GLY PRO VAL ARG MET VAL HIS ALA LEU ASN TYR SEQRES 13 B 392 THR ASP PHE LEU TYR ARG PRO ARG ARG PRO GLU GLU LEU SEQRES 14 B 392 ARG THR GLU GLU GLY GLY GLY VAL VAL PHE SER GLN ALA SEQRES 15 B 392 ALA HIS GLN VAL ASP ILE VAL ARG LEU LEU VAL GLY THR SEQRES 16 B 392 ARG VAL ARG ARG VAL ARG ALA ILE THR GLY ASP TRP ASP SEQRES 17 B 392 PRO MET ARG PRO THR GLN GLY ALA TYR SER ALA LEU LEU SEQRES 18 B 392 TRP PHE GLU GLY GLY ALA PHE ALA SER ILE SER TYR ASN SEQRES 19 B 392 GLY TYR GLY HIS PHE ASP SER ASP GLU TRP CYS ASP TRP SEQRES 20 B 392 ILE GLY GLU MET GLY GLY ASP LYS SER PRO GLU ALA TYR SEQRES 21 B 392 GLY ALA ALA ARG ARG LYS LEU ALA THR VAL GLY SER ALA SEQRES 22 B 392 GLN GLU GLU ALA ASN LEU LYS ALA ALA ALA THR TYR GLY SEQRES 23 B 392 GLY PRO GLY TYR VAL ALA ALA ALA THR ASP ALA GLN PRO SEQRES 24 B 392 ILE TRP HIS GLN HIS PHE GLY PRO ILE VAL VAL SER CYS SEQRES 25 B 392 GLU ARG GLY ASP ILE ARG PRO LEU PRO ASP SER VAL CYS SEQRES 26 B 392 VAL TYR ALA ASP LEU ALA LYS GLU ARG ARG SER LEU GLN SEQRES 27 B 392 ARG PRO VAL VAL PRO ARG PHE GLU VAL ILE ASP GLU LEU SEQRES 28 B 392 TYR HIS ALA VAL VAL ASN GLU ILE LYS PRO LEU HIS ASP SEQRES 29 B 392 GLY VAL TRP ALA ARG ALA THR LEU GLU VAL CYS LEU ALA SEQRES 30 B 392 LEU LEU ASP SER ALA GLY SER GLY LYS ASP VAL GLU LEU SEQRES 31 B 392 PRO ARG HET GOL A 501 6 HET GOL A 502 6 HET NAD A 503 44 HET GOL B 501 6 HET NAD B 502 44 HETNAM GOL GLYCEROL HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 8 HOH *149(H2 O) HELIX 1 AA1 GLY A 15 ASP A 28 1 14 HELIX 2 AA2 ARG A 40 ARG A 52 1 13 HELIX 3 AA3 ASP A 58 ASN A 65 1 8 HELIX 4 AA4 PRO A 76 HIS A 90 1 15 HELIX 5 AA5 SER A 103 ALA A 117 1 15 HELIX 6 AA6 CYS A 126 PHE A 129 5 4 HELIX 7 AA7 ASP A 130 GLY A 143 1 14 HELIX 8 AA8 ASP A 158 ARG A 162 5 5 HELIX 9 AA9 GLY A 175 GLY A 194 1 20 HELIX 10 AB1 ASP A 240 ASP A 246 5 7 HELIX 11 AB2 ARG A 344 VAL A 356 1 13 HELIX 12 AB3 ASP A 364 GLY A 385 1 22 HELIX 13 AB4 GLY B 15 ASP B 28 1 14 HELIX 14 AB5 ARG B 40 ARG B 52 1 13 HELIX 15 AB6 ASP B 58 ASN B 65 1 8 HELIX 16 AB7 PRO B 76 GLN B 78 5 3 HELIX 17 AB8 PHE B 79 HIS B 90 1 12 HELIX 18 AB9 SER B 103 ALA B 117 1 15 HELIX 19 AC1 CYS B 126 PHE B 129 5 4 HELIX 20 AC2 ASP B 130 GLY B 143 1 14 HELIX 21 AC3 ASP B 158 ARG B 162 5 5 HELIX 22 AC4 GLY B 176 GLY B 194 1 19 HELIX 23 AC5 ASP B 240 ASP B 246 5 7 HELIX 24 AC6 ARG B 344 VAL B 356 1 13 HELIX 25 AC7 ASP B 364 SER B 384 1 21 SHEET 1 AA1 6 VAL A 55 TYR A 56 0 SHEET 2 AA1 6 ILE A 31 CYS A 37 1 N ALA A 36 O TYR A 56 SHEET 3 AA1 6 LEU A 7 ALA A 12 1 N LEU A 9 O LYS A 32 SHEET 4 AA1 6 ALA A 70 ILE A 73 1 O ALA A 70 N GLY A 10 SHEET 5 AA1 6 HIS A 93 VAL A 96 1 O HIS A 93 N ILE A 71 SHEET 6 AA1 6 LEU A 121 VAL A 123 1 O ILE A 122 N VAL A 96 SHEET 1 AA2 9 LYS A 332 SER A 336 0 SHEET 2 AA2 9 SER A 323 TYR A 327 -1 N VAL A 326 O GLU A 333 SHEET 3 AA2 9 GLY A 315 PRO A 319 -1 N ARG A 318 O CYS A 325 SHEET 4 AA2 9 ILE A 308 CYS A 312 -1 N CYS A 312 O GLY A 315 SHEET 5 AA2 9 VAL A 148 TYR A 156 -1 N ARG A 149 O SER A 311 SHEET 6 AA2 9 PHE A 228 ASN A 234 1 O SER A 230 N ALA A 153 SHEET 7 AA2 9 ALA A 216 PHE A 223 -1 N ALA A 219 O ILE A 231 SHEET 8 AA2 9 VAL A 197 GLY A 205 -1 N GLY A 205 O ALA A 216 SHEET 9 AA2 9 VAL A 388 GLU A 389 -1 O VAL A 388 N VAL A 200 SHEET 1 AA3 6 VAL B 55 TYR B 56 0 SHEET 2 AA3 6 ILE B 31 CYS B 37 1 N ALA B 36 O TYR B 56 SHEET 3 AA3 6 LEU B 7 ALA B 12 1 N LEU B 9 O LYS B 32 SHEET 4 AA3 6 ALA B 70 ILE B 73 1 O ALA B 70 N GLY B 10 SHEET 5 AA3 6 HIS B 93 VAL B 96 1 O HIS B 93 N ILE B 71 SHEET 6 AA3 6 LEU B 121 VAL B 123 1 O ILE B 122 N VAL B 96 SHEET 1 AA4 9 LYS B 332 SER B 336 0 SHEET 2 AA4 9 SER B 323 TYR B 327 -1 N VAL B 326 O GLU B 333 SHEET 3 AA4 9 GLY B 315 PRO B 319 -1 N ARG B 318 O CYS B 325 SHEET 4 AA4 9 ILE B 308 CYS B 312 -1 N CYS B 312 O GLY B 315 SHEET 5 AA4 9 VAL B 148 TYR B 156 -1 N ARG B 149 O SER B 311 SHEET 6 AA4 9 PHE B 228 ASN B 234 1 O SER B 230 N ALA B 153 SHEET 7 AA4 9 ALA B 216 PHE B 223 -1 N ALA B 219 O ILE B 231 SHEET 8 AA4 9 VAL B 197 GLY B 205 -1 N GLY B 205 O ALA B 216 SHEET 9 AA4 9 VAL B 388 GLU B 389 -1 O VAL B 388 N VAL B 200 CISPEP 1 LYS A 98 PRO A 99 0 -11.24 CISPEP 2 LYS B 98 PRO B 99 0 -10.37 CRYST1 54.070 92.070 163.230 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006126 0.00000