HEADER OXIDOREDUCTASE 01-MAR-22 7X3Z TITLE CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1 TITLE 2 COMPLEXED WITH ESTRONE AND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 17-BETA-HSD 1,20 ALPHA-HYDROXYSTEROID DEHYDROGENASE,20- COMPND 5 ALPHA-HSD,E2DH,ESTRADIOL 17-BETA-DEHYDROGENASE 1,PLACENTAL 17-BETA- COMPND 6 HYDROXYSTEROID DEHYDROGENASE,SHORT CHAIN DEHYDROGENASE/REDUCTASE COMPND 7 FAMILY 28C MEMBER 1; COMPND 8 EC: 1.1.1.51,1.1.1.62; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSD17B1, E17KSR, EDH17B1, EDH17B2, EDHB17, SDR28C1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS 17BETA-HSD1, ESTRONE, FUNCTIONAL ANALYSES, OXIDOREDUCTASE, STEROID, KEYWDS 2 NAD/NADH EXPDTA X-RAY DIFFRACTION AUTHOR T.LI,S.X.LIN,H.YIN REVDAT 2 29-MAY-24 7X3Z 1 REMARK REVDAT 1 25-JAN-23 7X3Z 0 JRNL AUTH T.LI,X.SONG,P.STEPHEN,H.YIN,S.X.LIN JRNL TITL NEW INSIGHTS INTO THE SUBSTRATE INHIBITION OF HUMAN 17 JRNL TITL 2 BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1. JRNL REF J.STEROID BIOCHEM.MOL.BIOL. V. 228 06246 2023 JRNL REFN ISSN 0960-0760 JRNL PMID 36634828 JRNL DOI 10.1016/J.JSBMB.2023.106246 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.35000 REMARK 3 B22 (A**2) : -3.81000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.328 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4404 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4129 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5987 ; 1.606 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9584 ; 0.507 ; 1.556 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 7.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ; 9.548 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;17.040 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5053 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 877 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2224 ; 3.546 ; 3.807 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2223 ; 3.546 ; 3.806 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2774 ; 5.162 ; 5.690 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2775 ; 5.163 ; 5.691 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2180 ; 4.417 ; 4.515 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2181 ; 4.416 ; 4.516 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3212 ; 6.661 ; 6.555 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4813 ; 8.680 ;51.235 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4814 ; 8.679 ;51.234 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7X3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300027664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.0 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.4.05 REMARK 200 STARTING MODEL: 1JTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KH2PO4, PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.52000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.52000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 191 REMARK 465 PHE A 192 REMARK 465 MET A 193 REMARK 465 GLU A 194 REMARK 465 LYS A 195 REMARK 465 VAL A 196 REMARK 465 LEU A 197 REMARK 465 ASP A 286 REMARK 465 VAL A 287 REMARK 465 PRO A 288 REMARK 465 ALA A 289 REMARK 465 LYS A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ALA A 293 REMARK 465 GLY A 294 REMARK 465 ALA A 295 REMARK 465 GLU A 296 REMARK 465 ALA A 297 REMARK 465 GLY A 298 REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 465 ALA A 301 REMARK 465 GLY A 302 REMARK 465 PRO A 303 REMARK 465 GLY A 304 REMARK 465 ALA A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 307 REMARK 465 GLU A 308 REMARK 465 ALA A 309 REMARK 465 GLY A 310 REMARK 465 ARG A 311 REMARK 465 GLY A 312 REMARK 465 ALA A 313 REMARK 465 VAL A 314 REMARK 465 GLY A 315 REMARK 465 ASP A 316 REMARK 465 PRO A 317 REMARK 465 GLU A 318 REMARK 465 LEU A 319 REMARK 465 GLY A 320 REMARK 465 ASP A 321 REMARK 465 PRO A 322 REMARK 465 PRO A 323 REMARK 465 ALA A 324 REMARK 465 ALA A 325 REMARK 465 PRO A 326 REMARK 465 GLN A 327 REMARK 465 MET B 0 REMARK 465 ALA B 191 REMARK 465 PHE B 192 REMARK 465 MET B 193 REMARK 465 GLU B 194 REMARK 465 LYS B 195 REMARK 465 VAL B 196 REMARK 465 LEU B 197 REMARK 465 ASP B 286 REMARK 465 VAL B 287 REMARK 465 PRO B 288 REMARK 465 ALA B 289 REMARK 465 LYS B 290 REMARK 465 ALA B 291 REMARK 465 GLU B 292 REMARK 465 ALA B 293 REMARK 465 GLY B 294 REMARK 465 ALA B 295 REMARK 465 GLU B 296 REMARK 465 ALA B 297 REMARK 465 GLY B 298 REMARK 465 GLY B 299 REMARK 465 GLY B 300 REMARK 465 ALA B 301 REMARK 465 GLY B 302 REMARK 465 PRO B 303 REMARK 465 GLY B 304 REMARK 465 ALA B 305 REMARK 465 GLU B 306 REMARK 465 ASP B 307 REMARK 465 GLU B 308 REMARK 465 ALA B 309 REMARK 465 GLY B 310 REMARK 465 ARG B 311 REMARK 465 GLY B 312 REMARK 465 ALA B 313 REMARK 465 VAL B 314 REMARK 465 GLY B 315 REMARK 465 ASP B 316 REMARK 465 PRO B 317 REMARK 465 GLU B 318 REMARK 465 LEU B 319 REMARK 465 GLY B 320 REMARK 465 ASP B 321 REMARK 465 PRO B 322 REMARK 465 PRO B 323 REMARK 465 ALA B 324 REMARK 465 ALA B 325 REMARK 465 PRO B 326 REMARK 465 GLN B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 115 -62.08 -108.74 REMARK 500 PHE A 151 -0.93 77.57 REMARK 500 ASN A 152 40.46 -109.24 REMARK 500 ARG B 2 -168.77 -166.61 REMARK 500 ALA B 53 50.00 35.00 REMARK 500 THR B 207 -142.73 -122.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 228 ALA A 229 -147.68 REMARK 500 HIS B 189 THR B 190 142.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 131 0.08 SIDE CHAIN REMARK 500 ARG B 37 0.11 SIDE CHAIN REMARK 500 ARG B 76 0.12 SIDE CHAIN REMARK 500 ARG B 136 0.07 SIDE CHAIN REMARK 500 ARG B 214 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 401 REMARK 610 NAD B 401 DBREF 7X3Z A 0 327 UNP P14061 DHB1_HUMAN 1 328 DBREF 7X3Z B 0 327 UNP P14061 DHB1_HUMAN 1 328 SEQRES 1 A 328 MET ALA ARG THR VAL VAL LEU ILE THR GLY CYS SER SER SEQRES 2 A 328 GLY ILE GLY LEU HIS LEU ALA VAL ARG LEU ALA SER ASP SEQRES 3 A 328 PRO SER GLN SER PHE LYS VAL TYR ALA THR LEU ARG ASP SEQRES 4 A 328 LEU LYS THR GLN GLY ARG LEU TRP GLU ALA ALA ARG ALA SEQRES 5 A 328 LEU ALA CYS PRO PRO GLY SER LEU GLU THR LEU GLN LEU SEQRES 6 A 328 ASP VAL ARG ASP SER LYS SER VAL ALA ALA ALA ARG GLU SEQRES 7 A 328 ARG VAL THR GLU GLY ARG VAL ASP VAL LEU VAL CYS ASN SEQRES 8 A 328 ALA GLY LEU GLY LEU LEU GLY PRO LEU GLU ALA LEU GLY SEQRES 9 A 328 GLU ASP ALA VAL ALA SER VAL LEU ASP VAL ASN VAL VAL SEQRES 10 A 328 GLY THR VAL ARG MET LEU GLN ALA PHE LEU PRO ASP MET SEQRES 11 A 328 LYS ARG ARG GLY SER GLY ARG VAL LEU VAL THR GLY SER SEQRES 12 A 328 VAL GLY GLY LEU MET GLY LEU PRO PHE ASN ASP VAL TYR SEQRES 13 A 328 CYS ALA SER LYS PHE ALA LEU GLU GLY LEU CYS GLU SER SEQRES 14 A 328 LEU ALA VAL LEU LEU LEU PRO PHE GLY VAL HIS LEU SER SEQRES 15 A 328 LEU ILE GLU CYS GLY PRO VAL HIS THR ALA PHE MET GLU SEQRES 16 A 328 LYS VAL LEU GLY SER PRO GLU GLU VAL LEU ASP ARG THR SEQRES 17 A 328 ASP ILE HIS THR PHE HIS ARG PHE TYR GLN TYR LEU ALA SEQRES 18 A 328 HIS SER LYS GLN VAL PHE ARG GLU ALA ALA GLN ASN PRO SEQRES 19 A 328 GLU GLU VAL ALA GLU VAL PHE LEU THR ALA LEU ARG ALA SEQRES 20 A 328 PRO LYS PRO THR LEU ARG TYR PHE THR THR GLU ARG PHE SEQRES 21 A 328 LEU PRO LEU LEU ARG MET ARG LEU ASP ASP PRO SER GLY SEQRES 22 A 328 SER ASN TYR VAL THR ALA MET HIS ARG GLU VAL PHE GLY SEQRES 23 A 328 ASP VAL PRO ALA LYS ALA GLU ALA GLY ALA GLU ALA GLY SEQRES 24 A 328 GLY GLY ALA GLY PRO GLY ALA GLU ASP GLU ALA GLY ARG SEQRES 25 A 328 GLY ALA VAL GLY ASP PRO GLU LEU GLY ASP PRO PRO ALA SEQRES 26 A 328 ALA PRO GLN SEQRES 1 B 328 MET ALA ARG THR VAL VAL LEU ILE THR GLY CYS SER SER SEQRES 2 B 328 GLY ILE GLY LEU HIS LEU ALA VAL ARG LEU ALA SER ASP SEQRES 3 B 328 PRO SER GLN SER PHE LYS VAL TYR ALA THR LEU ARG ASP SEQRES 4 B 328 LEU LYS THR GLN GLY ARG LEU TRP GLU ALA ALA ARG ALA SEQRES 5 B 328 LEU ALA CYS PRO PRO GLY SER LEU GLU THR LEU GLN LEU SEQRES 6 B 328 ASP VAL ARG ASP SER LYS SER VAL ALA ALA ALA ARG GLU SEQRES 7 B 328 ARG VAL THR GLU GLY ARG VAL ASP VAL LEU VAL CYS ASN SEQRES 8 B 328 ALA GLY LEU GLY LEU LEU GLY PRO LEU GLU ALA LEU GLY SEQRES 9 B 328 GLU ASP ALA VAL ALA SER VAL LEU ASP VAL ASN VAL VAL SEQRES 10 B 328 GLY THR VAL ARG MET LEU GLN ALA PHE LEU PRO ASP MET SEQRES 11 B 328 LYS ARG ARG GLY SER GLY ARG VAL LEU VAL THR GLY SER SEQRES 12 B 328 VAL GLY GLY LEU MET GLY LEU PRO PHE ASN ASP VAL TYR SEQRES 13 B 328 CYS ALA SER LYS PHE ALA LEU GLU GLY LEU CYS GLU SER SEQRES 14 B 328 LEU ALA VAL LEU LEU LEU PRO PHE GLY VAL HIS LEU SER SEQRES 15 B 328 LEU ILE GLU CYS GLY PRO VAL HIS THR ALA PHE MET GLU SEQRES 16 B 328 LYS VAL LEU GLY SER PRO GLU GLU VAL LEU ASP ARG THR SEQRES 17 B 328 ASP ILE HIS THR PHE HIS ARG PHE TYR GLN TYR LEU ALA SEQRES 18 B 328 HIS SER LYS GLN VAL PHE ARG GLU ALA ALA GLN ASN PRO SEQRES 19 B 328 GLU GLU VAL ALA GLU VAL PHE LEU THR ALA LEU ARG ALA SEQRES 20 B 328 PRO LYS PRO THR LEU ARG TYR PHE THR THR GLU ARG PHE SEQRES 21 B 328 LEU PRO LEU LEU ARG MET ARG LEU ASP ASP PRO SER GLY SEQRES 22 B 328 SER ASN TYR VAL THR ALA MET HIS ARG GLU VAL PHE GLY SEQRES 23 B 328 ASP VAL PRO ALA LYS ALA GLU ALA GLY ALA GLU ALA GLY SEQRES 24 B 328 GLY GLY ALA GLY PRO GLY ALA GLU ASP GLU ALA GLY ARG SEQRES 25 B 328 GLY ALA VAL GLY ASP PRO GLU LEU GLY ASP PRO PRO ALA SEQRES 26 B 328 ALA PRO GLN HET NAD A 401 19 HET NAD B 401 19 HET J3Z B 402 20 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM J3Z (9BETA,13ALPHA)-3-HYDROXYESTRA-1,3,5(10)-TRIEN-17-ONE HETSYN J3Z ESTRONE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 J3Z C18 H22 O2 FORMUL 6 HOH *77(H2 O) HELIX 1 AA1 SER A 12 SER A 24 1 13 HELIX 2 AA2 ASP A 38 THR A 41 5 4 HELIX 3 AA3 GLN A 42 LEU A 52 1 11 HELIX 4 AA4 ASP A 68 ARG A 78 1 11 HELIX 5 AA5 PRO A 98 LEU A 102 5 5 HELIX 6 AA6 GLY A 103 VAL A 115 1 13 HELIX 7 AA7 VAL A 115 GLY A 133 1 19 HELIX 8 AA8 GLY A 144 LEU A 146 5 3 HELIX 9 AA9 ASN A 152 LEU A 174 1 23 HELIX 10 AB1 SER A 199 ARG A 206 1 8 HELIX 11 AB2 ASP A 208 ALA A 230 1 23 HELIX 12 AB3 ASN A 232 ALA A 246 1 15 HELIX 13 AB4 PHE A 259 ASP A 269 1 11 HELIX 14 AB5 GLY A 272 PHE A 284 1 13 HELIX 15 AB6 SER B 12 SER B 24 1 13 HELIX 16 AB7 ASP B 38 THR B 41 5 4 HELIX 17 AB8 GLN B 42 LEU B 52 1 11 HELIX 18 AB9 ASP B 68 ARG B 78 1 11 HELIX 19 AC1 PRO B 98 LEU B 102 5 5 HELIX 20 AC2 GLY B 103 VAL B 115 1 13 HELIX 21 AC3 VAL B 115 ARG B 132 1 18 HELIX 22 AC4 GLY B 144 LEU B 146 5 3 HELIX 23 AC5 ASN B 152 LEU B 174 1 23 HELIX 24 AC6 SER B 199 THR B 207 1 9 HELIX 25 AC7 ASP B 208 ALA B 230 1 23 HELIX 26 AC8 ASN B 232 ALA B 246 1 15 HELIX 27 AC9 PHE B 259 ASP B 269 1 11 HELIX 28 AD1 GLY B 272 GLY B 285 1 14 SHEET 1 AA1 7 LEU A 59 GLN A 63 0 SHEET 2 AA1 7 PHE A 30 LEU A 36 1 N ALA A 34 O GLU A 60 SHEET 3 AA1 7 THR A 3 ILE A 7 1 N VAL A 5 O TYR A 33 SHEET 4 AA1 7 VAL A 86 CYS A 89 1 O VAL A 86 N VAL A 4 SHEET 5 AA1 7 GLY A 135 SER A 142 1 O ARG A 136 N LEU A 87 SHEET 6 AA1 7 VAL A 178 CYS A 185 1 O HIS A 179 N VAL A 137 SHEET 7 AA1 7 ARG A 252 PHE A 254 1 O TYR A 253 N GLU A 184 SHEET 1 AA2 7 LEU B 59 GLN B 63 0 SHEET 2 AA2 7 PHE B 30 LEU B 36 1 N VAL B 32 O GLU B 60 SHEET 3 AA2 7 THR B 3 ILE B 7 1 N ILE B 7 O THR B 35 SHEET 4 AA2 7 VAL B 86 CYS B 89 1 O VAL B 86 N LEU B 6 SHEET 5 AA2 7 GLY B 135 SER B 142 1 O LEU B 138 N LEU B 87 SHEET 6 AA2 7 VAL B 178 CYS B 185 1 O ILE B 183 N VAL B 139 SHEET 7 AA2 7 ARG B 252 PHE B 254 1 O TYR B 253 N GLU B 184 CRYST1 43.050 108.150 117.040 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008544 0.00000