HEADER GENE REGULATION/TRANSFERASE 09-MAR-22 7X7H TITLE CRYSTAL STRUCTURE OF FRUCTOSE REGULATOR/HISTIDINE PHOSPHOCARRIER TITLE 2 PROTEIN COMPLEX FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATABOLITE REPRESSOR/ACTIVATOR; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HPR FAMILY PHOSPHOCARRIER PROTEIN; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: PTS SUGAR TRANSPORTER,PHOSPHOCARRIER PROTEIN HPR; COMPND 9 EC: 2.7.11.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: CRA, D6U24_17570, EYB64_06550, FLM02_11955, FXE67_10910, SOURCE 5 HPY07_16365; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 10 ORGANISM_TAXID: 666; SOURCE 11 GENE: PTSH, BC353_05360, D6U24_08050, ERS013138_01023, SOURCE 12 ERS013165_01775, ERS013166_02939, ERS013186_02269, ERS013193_00498, SOURCE 13 ERS013198_00582, ERS013199_02080, ERS013200_03874, ERS013201_03670, SOURCE 14 ERS013202_02606, ERS013206_00437, ERS013207_01739, EYB64_14625, SOURCE 15 F0315_00300, F0H40_04200, F0M16_13080, FLM02_01405, FLM12_04230, SOURCE 16 FXE67_16935, HPY07_09360; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PTS, VIBRIO, FRUCTOSE, TRANSCRIPTIONAL REGULATOR, GALR/LACI, HPR, KEYWDS 2 GENE REGULATION, GENE REGULATION-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.-K.KIM,J.ZHANG,C.-K.YOON,Y.-J.SEOK REVDAT 4 29-MAY-24 7X7H 1 REMARK REVDAT 3 05-JUL-23 7X7H 1 JRNL REVDAT 2 12-APR-23 7X7H 1 JRNL REVDAT 1 15-MAR-23 7X7H 0 JRNL AUTH C.K.YOON,S.H.LEE,J.ZHANG,H.Y.LEE,M.K.KIM,Y.J.SEOK JRNL TITL HPR PREVENTS FRUR-MEDIATED FACILITATION OF RNA POLYMERASE JRNL TITL 2 BINDING TO THE FRU PROMOTER IN VIBRIO CHOLERAE. JRNL REF NUCLEIC ACIDS RES. V. 51 5432 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36987873 JRNL DOI 10.1093/NAR/GKAD220 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.340 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1300 - 4.8200 1.00 3425 155 0.1914 0.2346 REMARK 3 2 4.8200 - 3.8300 1.00 3249 147 0.1414 0.1528 REMARK 3 3 3.8300 - 3.3400 1.00 3215 147 0.1591 0.2104 REMARK 3 4 3.3400 - 3.0400 1.00 3172 143 0.1758 0.2472 REMARK 3 5 3.0400 - 2.8200 1.00 3120 142 0.1952 0.2391 REMARK 3 6 2.8200 - 2.6600 1.00 3176 144 0.1883 0.2316 REMARK 3 7 2.6600 - 2.5200 1.00 3149 143 0.1888 0.2491 REMARK 3 8 2.5200 - 2.4100 1.00 3085 139 0.1844 0.2348 REMARK 3 9 2.4100 - 2.3200 1.00 3149 143 0.1895 0.2662 REMARK 3 10 2.3200 - 2.2400 1.00 3070 140 0.1905 0.2456 REMARK 3 11 2.2400 - 2.1700 1.00 3121 140 0.1859 0.2480 REMARK 3 12 2.1700 - 2.1100 1.00 3083 141 0.1942 0.2661 REMARK 3 13 2.1100 - 2.0500 1.00 3117 141 0.1993 0.2504 REMARK 3 14 2.0500 - 2.0000 0.99 2978 135 0.2346 0.2881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 0.939 NULL REMARK 3 CHIRALITY : 0.049 876 REMARK 3 PLANARITY : 0.006 978 REMARK 3 DIHEDRAL : 5.589 756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -8.4218 -14.2757 41.0611 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.1443 REMARK 3 T33: 0.1652 T12: 0.0052 REMARK 3 T13: -0.0074 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3284 L22: 0.6115 REMARK 3 L33: 0.8246 L12: 0.0260 REMARK 3 L13: -0.1031 L23: 0.0339 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0365 S13: 0.0338 REMARK 3 S21: -0.0523 S22: 0.0457 S23: 0.0144 REMARK 3 S31: -0.0328 S32: -0.0103 S33: -0.0213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 7X7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300028266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.99600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.733 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RZR REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM ACETATE, PEG 3350, SPERMIDINE, REMARK 280 MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.97000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.33450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.17750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 156.33450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.97000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.17750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 TYR A 19 REMARK 465 VAL A 20 REMARK 465 ILE A 21 REMARK 465 ASN A 22 REMARK 465 GLY A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 GLN A 26 REMARK 465 LYS A 27 REMARK 465 TYR A 28 REMARK 465 ARG A 29 REMARK 465 ILE A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 33 REMARK 465 THR A 34 REMARK 465 GLN A 35 REMARK 465 HIS A 36 REMARK 465 LYS A 37 REMARK 465 VAL A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 VAL A 41 REMARK 465 VAL A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 TYR A 45 REMARK 465 ASN A 46 REMARK 465 PHE A 47 REMARK 465 ARG A 48 REMARK 465 PRO A 49 REMARK 465 ASP A 50 REMARK 465 HIS A 51 REMARK 465 ALA A 52 REMARK 465 ALA A 53 REMARK 465 SER A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 85 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 GLU C 5 REMARK 465 ILE C 6 REMARK 465 ALA C 7 REMARK 465 LYS C 8 REMARK 465 LEU C 9 REMARK 465 ALA C 10 REMARK 465 GLY C 11 REMARK 465 VAL C 12 REMARK 465 SER C 13 REMARK 465 LYS C 14 REMARK 465 THR C 15 REMARK 465 THR C 16 REMARK 465 ALA C 17 REMARK 465 SER C 18 REMARK 465 TYR C 19 REMARK 465 VAL C 20 REMARK 465 ILE C 21 REMARK 465 ASN C 22 REMARK 465 GLY C 23 REMARK 465 LYS C 24 REMARK 465 ALA C 25 REMARK 465 GLN C 26 REMARK 465 LYS C 27 REMARK 465 TYR C 28 REMARK 465 ARG C 29 REMARK 465 ILE C 30 REMARK 465 SER C 31 REMARK 465 GLU C 32 REMARK 465 LYS C 33 REMARK 465 THR C 34 REMARK 465 GLN C 35 REMARK 465 HIS C 36 REMARK 465 LYS C 37 REMARK 465 VAL C 38 REMARK 465 MET C 39 REMARK 465 ALA C 40 REMARK 465 VAL C 41 REMARK 465 VAL C 42 REMARK 465 GLU C 43 REMARK 465 GLN C 44 REMARK 465 TYR C 45 REMARK 465 ASN C 46 REMARK 465 PHE C 47 REMARK 465 ARG C 48 REMARK 465 PRO C 49 REMARK 465 ASP C 50 REMARK 465 HIS C 51 REMARK 465 ALA C 52 REMARK 465 ALA C 53 REMARK 465 SER C 54 REMARK 465 ALA C 55 REMARK 465 LEU C 56 REMARK 465 ARG C 57 REMARK 465 ALA C 58 REMARK 465 GLY C 59 REMARK 465 MET D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG C 62 O HOH C 502 1.57 REMARK 500 H GLY B 39 O HOH B 102 1.59 REMARK 500 O HOH A 501 O HOH A 615 1.76 REMARK 500 O GLU A 293 O HOH A 501 1.98 REMARK 500 O HOH B 119 O HOH B 152 2.01 REMARK 500 O HOH B 134 O HOH B 148 2.02 REMARK 500 O HOH A 637 O HOH A 650 2.06 REMARK 500 O HOH A 612 O HOH C 666 2.08 REMARK 500 O HOH C 638 O HOH C 644 2.09 REMARK 500 OD1 ASP C 163 O HOH C 501 2.10 REMARK 500 O HOH C 502 O HOH C 505 2.10 REMARK 500 O HOH C 567 O HOH C 577 2.10 REMARK 500 OE1 GLN D 5 OG1 THR D 62 2.11 REMARK 500 O HOH A 676 O HOH A 683 2.11 REMARK 500 O HOH A 687 O HOH A 695 2.15 REMARK 500 O HOH A 530 O HOH A 662 2.16 REMARK 500 NH1 ARG C 62 O HOH C 502 2.17 REMARK 500 O HOH C 609 O HOH D 109 2.17 REMARK 500 OD2 ASP A 101 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP D 82 O HOH C 504 4445 2.00 REMARK 500 O HOH A 695 O HOH C 654 1655 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 227 CD LYS A 227 CE 0.376 REMARK 500 LYS A 227 CE LYS A 227 NZ 0.157 REMARK 500 VAL A 228 CB VAL A 228 CG1 0.143 REMARK 500 ASP A 236 CG ASP A 236 OD2 0.141 REMARK 500 LYS D 71 CE LYS D 71 NZ 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 227 CB - CG - CD ANGL. DEV. = -23.9 DEGREES REMARK 500 ASP A 236 OD1 - CG - OD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 236 CB - CG - OD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 LEU A 277 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LYS D 40 CD - CE - NZ ANGL. DEV. = -19.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 70 119.31 -164.85 REMARK 500 ASP A 148 -52.66 71.10 REMARK 500 HIS B 15 -177.31 -69.85 REMARK 500 ASP C 70 119.44 -164.16 REMARK 500 SER C 129 55.34 -103.32 REMARK 500 ASP C 148 -51.93 68.13 REMARK 500 ARG C 310 78.27 -119.91 REMARK 500 HIS D 15 -176.94 -67.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 693 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 694 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 695 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 153 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 154 DISTANCE = 14.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 86 OD1 REMARK 620 2 GLN A 89 OE1 97.7 REMARK 620 3 ASP A 102 OD1 9.3 94.4 REMARK 620 4 ASP A 102 OD2 12.9 94.9 3.9 REMARK 620 5 GLN A 104 OE1 6.8 94.7 2.7 6.5 REMARK 620 6 HOH A 597 O 89.4 172.2 93.2 92.8 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 86 OD1 REMARK 620 2 GLN C 89 OE1 99.1 REMARK 620 3 ASP C 102 OD1 7.6 97.2 REMARK 620 4 ASP C 102 OD2 11.3 97.6 3.9 REMARK 620 5 GLN C 104 OE1 5.3 97.1 2.4 6.3 REMARK 620 6 HOH C 617 O 12.8 97.0 5.3 1.6 7.7 REMARK 620 7 HOH C 623 O 8.4 101.3 4.2 4.7 5.2 6.1 REMARK 620 N 1 2 3 4 5 6 DBREF1 7X7H A 1 326 UNP A0A0F0B292_VIBCL DBREF2 7X7H A A0A0F0B292 1 326 DBREF1 7X7H B 2 85 UNP A0A085PY40_VIBCL DBREF2 7X7H B A0A085PY40 2 85 DBREF1 7X7H C 1 326 UNP A0A0F0B292_VIBCL DBREF2 7X7H C A0A0F0B292 1 326 DBREF1 7X7H D 2 85 UNP A0A085PY40_VIBCL DBREF2 7X7H D A0A085PY40 2 85 SEQADV 7X7H MET B -5 UNP A0A085PY4 INITIATING METHIONINE SEQADV 7X7H HIS B -4 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS B -3 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS B -2 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS B -1 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS B 0 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS B 1 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H MET D -5 UNP A0A085PY4 INITIATING METHIONINE SEQADV 7X7H HIS D -4 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS D -3 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS D -2 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS D -1 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS D 0 UNP A0A085PY4 EXPRESSION TAG SEQADV 7X7H HIS D 1 UNP A0A085PY4 EXPRESSION TAG SEQRES 1 A 326 MET THR LEU ASP GLU ILE ALA LYS LEU ALA GLY VAL SER SEQRES 2 A 326 LYS THR THR ALA SER TYR VAL ILE ASN GLY LYS ALA GLN SEQRES 3 A 326 LYS TYR ARG ILE SER GLU LYS THR GLN HIS LYS VAL MET SEQRES 4 A 326 ALA VAL VAL GLU GLN TYR ASN PHE ARG PRO ASP HIS ALA SEQRES 5 A 326 ALA SER ALA LEU ARG ALA GLY ASN SER ARG SER PHE GLY SEQRES 6 A 326 LEU ILE ILE PRO ASP LEU GLU ASN THR SER TYR ALA ARG SEQRES 7 A 326 LEU ALA LYS LEU LEU GLU GLN ASN SER ARG GLN ALA GLY SEQRES 8 A 326 TYR GLN ILE LEU ILE ALA CYS SER ASP ASP ASP PRO GLN SEQRES 9 A 326 ILE GLU MET ALA ALA ALA GLU ALA LEU VAL SER ARG ARG SEQRES 10 A 326 ILE ASP ALA LEU PHE VAL ALA SER GLY ILE PRO SER ALA SEQRES 11 A 326 SER GLU TYR TYR LEU LYS LEU GLN GLN SER GLY THR PRO SEQRES 12 A 326 VAL ILE ALA ILE ASP ARG ALA LEU ASP ASP GLU TYR PHE SEQRES 13 A 326 SER CYS VAL ILE SER GLU ASP PHE GLY ALA ALA PHE GLU SEQRES 14 A 326 LEU THR ARG SER VAL LEU THR GLN ASP VAL HIS SER VAL SEQRES 15 A 326 GLY LEU VAL GLY ALA LEU PRO GLU LEU ASN VAL SER ARG SEQRES 16 A 326 GLU ARG GLU GLN GLY PHE ALA MET ALA VAL LYS GLN ARG SEQRES 17 A 326 GLY LEU PRO THR THR LEU GLY TYR GLY GLU HIS PHE ASN SEQRES 18 A 326 ARG GLU GLU GLY ARG LYS VAL PHE ALA LYS TRP VAL ALA SEQRES 19 A 326 ASN ASP GLN LEU PRO ASP ALA VAL VAL ALA THR SER TYR SEQRES 20 A 326 THR LEU LEU GLU GLY ILE LEU ASP VAL LEU LEU GLU GLN SEQRES 21 A 326 PRO GLU LEU MET GLN LYS VAL ARG LEU ALA THR PHE GLY SEQRES 22 A 326 ASP ASN ARG LEU LEU ASP PHE LEU PRO ILE ARG VAL ASN SEQRES 23 A 326 SER LEU PRO GLN GLN PHE GLU LEU ILE ALA ASP SER ALA SEQRES 24 A 326 LEU ALA LEU ALA LEU ASN ALA SER ALA LYS ARG TYR GLN SEQRES 25 A 326 THR GLY ILE GLU LEU ILE PRO ARG GLN LEU LYS VAL ARG SEQRES 26 A 326 THR SEQRES 1 B 91 MET HIS HIS HIS HIS HIS HIS TYR GLU LYS GLN VAL GLU SEQRES 2 B 91 ILE THR ALA GLU ASN GLY LEU HIS THR ARG PRO ALA ALA SEQRES 3 B 91 GLN PHE VAL LYS GLU ALA LYS ALA PHE ASP ALA ASP ILE SEQRES 4 B 91 THR VAL THR SER ASN GLY LYS SER ALA SER ALA LYS SER SEQRES 5 B 91 LEU PHE LYS LEU GLN THR LEU GLY LEU VAL LYS GLY THR SEQRES 6 B 91 VAL VAL THR ILE SER ALA GLU GLY PRO GLN ALA LYS GLU SEQRES 7 B 91 ALA VAL GLU HIS LEU VAL ALA LEU MET ASP GLN LEU HIS SEQRES 1 C 326 MET THR LEU ASP GLU ILE ALA LYS LEU ALA GLY VAL SER SEQRES 2 C 326 LYS THR THR ALA SER TYR VAL ILE ASN GLY LYS ALA GLN SEQRES 3 C 326 LYS TYR ARG ILE SER GLU LYS THR GLN HIS LYS VAL MET SEQRES 4 C 326 ALA VAL VAL GLU GLN TYR ASN PHE ARG PRO ASP HIS ALA SEQRES 5 C 326 ALA SER ALA LEU ARG ALA GLY ASN SER ARG SER PHE GLY SEQRES 6 C 326 LEU ILE ILE PRO ASP LEU GLU ASN THR SER TYR ALA ARG SEQRES 7 C 326 LEU ALA LYS LEU LEU GLU GLN ASN SER ARG GLN ALA GLY SEQRES 8 C 326 TYR GLN ILE LEU ILE ALA CYS SER ASP ASP ASP PRO GLN SEQRES 9 C 326 ILE GLU MET ALA ALA ALA GLU ALA LEU VAL SER ARG ARG SEQRES 10 C 326 ILE ASP ALA LEU PHE VAL ALA SER GLY ILE PRO SER ALA SEQRES 11 C 326 SER GLU TYR TYR LEU LYS LEU GLN GLN SER GLY THR PRO SEQRES 12 C 326 VAL ILE ALA ILE ASP ARG ALA LEU ASP ASP GLU TYR PHE SEQRES 13 C 326 SER CYS VAL ILE SER GLU ASP PHE GLY ALA ALA PHE GLU SEQRES 14 C 326 LEU THR ARG SER VAL LEU THR GLN ASP VAL HIS SER VAL SEQRES 15 C 326 GLY LEU VAL GLY ALA LEU PRO GLU LEU ASN VAL SER ARG SEQRES 16 C 326 GLU ARG GLU GLN GLY PHE ALA MET ALA VAL LYS GLN ARG SEQRES 17 C 326 GLY LEU PRO THR THR LEU GLY TYR GLY GLU HIS PHE ASN SEQRES 18 C 326 ARG GLU GLU GLY ARG LYS VAL PHE ALA LYS TRP VAL ALA SEQRES 19 C 326 ASN ASP GLN LEU PRO ASP ALA VAL VAL ALA THR SER TYR SEQRES 20 C 326 THR LEU LEU GLU GLY ILE LEU ASP VAL LEU LEU GLU GLN SEQRES 21 C 326 PRO GLU LEU MET GLN LYS VAL ARG LEU ALA THR PHE GLY SEQRES 22 C 326 ASP ASN ARG LEU LEU ASP PHE LEU PRO ILE ARG VAL ASN SEQRES 23 C 326 SER LEU PRO GLN GLN PHE GLU LEU ILE ALA ASP SER ALA SEQRES 24 C 326 LEU ALA LEU ALA LEU ASN ALA SER ALA LYS ARG TYR GLN SEQRES 25 C 326 THR GLY ILE GLU LEU ILE PRO ARG GLN LEU LYS VAL ARG SEQRES 26 C 326 THR SEQRES 1 D 91 MET HIS HIS HIS HIS HIS HIS TYR GLU LYS GLN VAL GLU SEQRES 2 D 91 ILE THR ALA GLU ASN GLY LEU HIS THR ARG PRO ALA ALA SEQRES 3 D 91 GLN PHE VAL LYS GLU ALA LYS ALA PHE ASP ALA ASP ILE SEQRES 4 D 91 THR VAL THR SER ASN GLY LYS SER ALA SER ALA LYS SER SEQRES 5 D 91 LEU PHE LYS LEU GLN THR LEU GLY LEU VAL LYS GLY THR SEQRES 6 D 91 VAL VAL THR ILE SER ALA GLU GLY PRO GLN ALA LYS GLU SEQRES 7 D 91 ALA VAL GLU HIS LEU VAL ALA LEU MET ASP GLN LEU HIS HET CA A 400 1 HET CA C 400 1 HETNAM CA CALCIUM ION FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *446(H2 O) HELIX 1 AA1 ASN A 73 ALA A 90 1 18 HELIX 2 AA2 ASP A 102 ARG A 116 1 15 HELIX 3 AA3 SER A 129 SER A 140 1 12 HELIX 4 AA4 ASP A 163 SER A 173 1 11 HELIX 5 AA5 LEU A 191 ARG A 208 1 18 HELIX 6 AA6 ASN A 221 ASN A 235 1 15 HELIX 7 AA7 SER A 246 GLN A 260 1 15 HELIX 8 AA8 PRO A 261 MET A 264 5 4 HELIX 9 AA9 ASN A 275 LEU A 281 5 7 HELIX 10 AB1 GLN A 291 ALA A 308 1 18 HELIX 11 AB2 HIS B 15 ALA B 28 1 14 HELIX 12 AB3 SER B 46 GLN B 51 1 6 HELIX 13 AB4 GLN B 69 LEU B 84 1 16 HELIX 14 AB5 ASN C 73 ALA C 90 1 18 HELIX 15 AB6 ASP C 102 ARG C 116 1 15 HELIX 16 AB7 SER C 129 SER C 140 1 12 HELIX 17 AB8 ASP C 163 SER C 173 1 11 HELIX 18 AB9 LEU C 191 ARG C 208 1 18 HELIX 19 AC1 ASN C 221 ASN C 235 1 15 HELIX 20 AC2 SER C 246 GLN C 260 1 15 HELIX 21 AC3 PRO C 261 MET C 264 5 4 HELIX 22 AC4 ARG C 276 LEU C 281 1 6 HELIX 23 AC5 GLN C 291 ALA C 308 1 18 HELIX 24 AC6 HIS D 15 LYS D 27 1 13 HELIX 25 AC7 SER D 46 GLN D 51 1 6 HELIX 26 AC8 GLN D 69 ASP D 82 1 14 SHEET 1 AA1 6 GLN A 93 CYS A 98 0 SHEET 2 AA1 6 SER A 63 ILE A 68 1 N PHE A 64 O LEU A 95 SHEET 3 AA1 6 LEU A 121 VAL A 123 1 O PHE A 122 N GLY A 65 SHEET 4 AA1 6 VAL A 144 ILE A 147 1 O ILE A 145 N LEU A 121 SHEET 5 AA1 6 SER A 157 SER A 161 1 O VAL A 159 N ALA A 146 SHEET 6 AA1 6 GLY A 314 ILE A 318 1 O ILE A 318 N ILE A 160 SHEET 1 AA2 5 THR A 212 GLY A 217 0 SHEET 2 AA2 5 VAL A 182 ALA A 187 1 N LEU A 184 O THR A 213 SHEET 3 AA2 5 ALA A 241 ALA A 244 1 O VAL A 243 N GLY A 183 SHEET 4 AA2 5 ARG A 268 PHE A 272 1 O ARG A 268 N VAL A 242 SHEET 5 AA2 5 ASN A 286 LEU A 288 1 O ASN A 286 N THR A 271 SHEET 1 AA3 4 HIS B 1 GLU B 7 0 SHEET 2 AA3 4 VAL B 60 GLU B 66 -1 O ILE B 63 N LYS B 4 SHEET 3 AA3 4 ASP B 32 SER B 37 -1 N ASP B 32 O GLU B 66 SHEET 4 AA3 4 LYS B 40 SER B 43 -1 O ALA B 42 N VAL B 35 SHEET 1 AA4 6 GLN C 93 CYS C 98 0 SHEET 2 AA4 6 SER C 63 ILE C 68 1 N PHE C 64 O LEU C 95 SHEET 3 AA4 6 ALA C 120 VAL C 123 1 O PHE C 122 N GLY C 65 SHEET 4 AA4 6 VAL C 144 ILE C 147 1 O ILE C 145 N LEU C 121 SHEET 5 AA4 6 SER C 157 SER C 161 1 O SER C 157 N ALA C 146 SHEET 6 AA4 6 GLY C 314 ILE C 318 1 O ILE C 318 N ILE C 160 SHEET 1 AA5 5 THR C 212 GLY C 217 0 SHEET 2 AA5 5 VAL C 182 ALA C 187 1 N LEU C 184 O THR C 213 SHEET 3 AA5 5 ALA C 241 ALA C 244 1 O VAL C 243 N GLY C 183 SHEET 4 AA5 5 ARG C 268 PHE C 272 1 O ARG C 268 N VAL C 242 SHEET 5 AA5 5 ASN C 286 LEU C 288 1 O ASN C 286 N THR C 271 SHEET 1 AA6 4 HIS D 1 GLU D 7 0 SHEET 2 AA6 4 VAL D 60 GLU D 66 -1 O VAL D 61 N VAL D 6 SHEET 3 AA6 4 ASP D 32 SER D 37 -1 N ASP D 32 O GLU D 66 SHEET 4 AA6 4 LYS D 40 SER D 43 -1 O LYS D 40 N SER D 37 LINK OD1 ASN A 86 CA CA A 400 1555 1555 2.36 LINK OE1 GLN A 89 CA CA A 400 1555 1555 2.36 LINK OD1 ASP A 102 CA CA A 400 1555 1455 2.51 LINK OD2 ASP A 102 CA CA A 400 1555 1455 2.47 LINK OE1 GLN A 104 CA CA A 400 1555 1455 2.34 LINK CA CA A 400 O HOH A 597 1555 1555 2.34 LINK OD1 ASN C 86 CA CA C 400 1555 1455 2.34 LINK OE1 GLN C 89 CA CA C 400 1555 1455 2.44 LINK OD1 ASP C 102 CA CA C 400 1555 1555 2.47 LINK OD2 ASP C 102 CA CA C 400 1555 1555 2.46 LINK OE1 GLN C 104 CA CA C 400 1555 1555 2.18 LINK CA CA C 400 O HOH C 617 1555 1555 2.66 LINK CA CA C 400 O HOH C 623 1555 1555 2.43 CRYST1 33.940 62.355 312.669 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003198 0.00000