HEADER TRANSCRIPTION 21-MAR-22 7XBE TITLE CO-CRYSTAL STRUCTURE OF CCPE-RD WITH CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: M013TW_0659; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSR FAMILY TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR L.F.LAN,F.F.CHEN,J.H.GAN REVDAT 2 29-NOV-23 7XBE 1 REMARK REVDAT 1 29-MAR-23 7XBE 0 JRNL AUTH L.F.LAN,F.F.CHEN,J.H.GAN JRNL TITL CO-CRYSTAL STRUCTURE OF CCPE-RD WITH CITRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.10000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1662 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1501 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2264 ; 1.343 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3510 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 5.610 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;40.415 ;25.904 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 292 ;10.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.193 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1849 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 312 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3163 ; 0.773 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 53 ;24.364 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3157 ; 4.002 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 51.302 16.201 14.935 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.0919 REMARK 3 T33: 0.0537 T12: 0.0079 REMARK 3 T13: 0.0145 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.0477 L22: 0.4324 REMARK 3 L33: 0.0674 L12: 0.0757 REMARK 3 L13: 0.1333 L23: 0.0676 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.4676 S13: -0.2882 REMARK 3 S21: -0.0767 S22: -0.0075 S23: 0.0083 REMARK 3 S31: -0.0301 S32: -0.0436 S33: 0.0269 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 34.366 26.341 -2.118 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.0175 REMARK 3 T33: 0.0396 T12: -0.0018 REMARK 3 T13: 0.0377 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.0607 L22: 0.4224 REMARK 3 L33: 0.6983 L12: -0.4583 REMARK 3 L13: 0.2954 L23: -0.2359 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0092 S13: 0.1592 REMARK 3 S21: -0.0383 S22: -0.0134 S23: -0.0196 REMARK 3 S31: 0.0035 S32: 0.0183 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 50.662 16.600 22.987 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.5485 REMARK 3 T33: 0.0308 T12: 0.0884 REMARK 3 T13: 0.0221 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 4.7597 L22: 0.4370 REMARK 3 L33: 2.2915 L12: -0.3114 REMARK 3 L13: -2.6512 L23: -0.4069 REMARK 3 S TENSOR REMARK 3 S11: -0.2797 S12: -1.3404 S13: -0.1867 REMARK 3 S21: 0.0525 S22: 0.2923 S23: 0.0875 REMARK 3 S31: 0.0906 S32: 0.4198 S33: -0.0126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7XBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300026862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9735 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5ZZO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 13.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.6, 25 % REMARK 280 (W/V) PEG 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.96750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.39950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.96750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.39950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.93500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 TYR A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 LEU A 12 REMARK 465 ASP A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 LYS A 16 REMARK 465 THR A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 LYS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 ILE A 24 REMARK 465 LEU A 25 REMARK 465 TYR A 26 REMARK 465 ILE A 27 REMARK 465 SER A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 VAL A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 ARG A 35 REMARK 465 LEU A 36 REMARK 465 LYS A 37 REMARK 465 ALA A 38 REMARK 465 ILE A 39 REMARK 465 GLU A 40 REMARK 465 ASN A 41 REMARK 465 ALA A 42 REMARK 465 PHE A 43 REMARK 465 GLY A 44 REMARK 465 VAL A 45 REMARK 465 ASP A 46 REMARK 465 ILE A 47 REMARK 465 PHE A 48 REMARK 465 ILE A 49 REMARK 465 ARG A 50 REMARK 465 THR A 51 REMARK 465 LYS A 52 REMARK 465 LYS A 53 REMARK 465 GLN A 54 REMARK 465 LEU A 55 REMARK 465 ILE A 56 REMARK 465 THR A 57 REMARK 465 THR A 58 REMARK 465 THR A 59 REMARK 465 GLU A 60 REMARK 465 GLY A 61 REMARK 465 THR A 62 REMARK 465 MET A 63 REMARK 465 ILE A 64 REMARK 465 ILE A 65 REMARK 465 GLU A 66 REMARK 465 HIS A 67 REMARK 465 ALA A 68 REMARK 465 ARG A 69 REMARK 465 ASP A 70 REMARK 465 MET A 71 REMARK 465 LEU A 72 REMARK 465 LYS A 73 REMARK 465 ARG A 74 REMARK 465 GLU A 75 REMARK 465 ARG A 76 REMARK 465 LEU A 77 REMARK 465 PHE A 78 REMARK 465 PHE A 79 REMARK 465 ASP A 80 REMARK 465 LYS A 81 REMARK 465 MET A 82 REMARK 465 GLN A 83 REMARK 465 ALA A 84 REMARK 465 HIS A 85 REMARK 465 ILE A 86 REMARK 465 GLY A 87 REMARK 465 GLN A 285 REMARK 465 PRO A 286 REMARK 465 LYS A 287 REMARK 465 ALA A 288 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 104 -82.79 -129.39 REMARK 500 ASN A 135 31.84 -96.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 183 O REMARK 620 2 ASP A 211 O 103.3 REMARK 620 3 FLC A 301 OG1 144.4 98.9 REMARK 620 4 FLC A 301 OHB 90.2 166.4 68.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 227 OG1 REMARK 620 2 ILE A 228 O 73.4 REMARK 620 N 1 DBREF1 7XBE A 1 288 UNP A0A7U4ASJ0_STAAU DBREF2 7XBE A A0A7U4ASJ0 1 288 SEQRES 1 A 288 MET LYS ILE GLU ASP TYR ARG LEU LEU ILE THR LEU ASP SEQRES 2 A 288 GLU THR LYS THR LEU ARG LYS ALA ALA GLU ILE LEU TYR SEQRES 3 A 288 ILE SER GLN PRO ALA VAL THR GLN ARG LEU LYS ALA ILE SEQRES 4 A 288 GLU ASN ALA PHE GLY VAL ASP ILE PHE ILE ARG THR LYS SEQRES 5 A 288 LYS GLN LEU ILE THR THR THR GLU GLY THR MET ILE ILE SEQRES 6 A 288 GLU HIS ALA ARG ASP MET LEU LYS ARG GLU ARG LEU PHE SEQRES 7 A 288 PHE ASP LYS MET GLN ALA HIS ILE GLY GLU VAL ASN GLY SEQRES 8 A 288 THR ILE SER ILE GLY CYS SER SER LEU ILE GLY GLN THR SEQRES 9 A 288 LEU LEU PRO GLU VAL LEU SER LEU TYR ASN ALA GLN PHE SEQRES 10 A 288 PRO ASN VAL GLU ILE GLN VAL GLN VAL GLY SER THR GLU SEQRES 11 A 288 GLN ILE LYS ALA ASN HIS ARG ASP TYR HIS VAL MET ILE SEQRES 12 A 288 THR ARG GLY ASN LYS VAL MET ASN LEU ALA ASN THR HIS SEQRES 13 A 288 LEU PHE ASN ASP ASP HIS TYR PHE ILE PHE PRO LYS ASN SEQRES 14 A 288 ARG ARG ASP ASP VAL THR LYS LEU PRO PHE ILE GLU PHE SEQRES 15 A 288 GLN ALA ASP PRO ILE TYR ILE ASN GLN ILE LYS GLN TRP SEQRES 16 A 288 TYR ASN ASP ASN LEU GLU GLN ASP TYR HIS ALA THR ILE SEQRES 17 A 288 THR VAL ASP GLN VAL ALA THR CYS LYS GLU MET LEU ILE SEQRES 18 A 288 SER GLY VAL GLY VAL THR ILE LEU PRO GLU ILE MET MET SEQRES 19 A 288 LYS ASN ILE SER LYS GLU GLN PHE GLU PHE GLU LYS VAL SEQRES 20 A 288 GLU ILE ASP ASN GLU PRO LEU ILE ARG SER THR PHE MET SEQRES 21 A 288 SER TYR ASP PRO SER MET LEU GLN LEU PRO GLN VAL ASP SEQRES 22 A 288 SER PHE VAL ASN LEU MET ALA SER PHE VAL GLU GLN PRO SEQRES 23 A 288 LYS ALA HET FLC A 301 13 HET NA A 302 1 HET NA A 303 1 HETNAM FLC CITRATE ANION HETNAM NA SODIUM ION FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *81(H2 O) HELIX 1 AA1 LEU A 100 GLN A 103 5 4 HELIX 2 AA2 THR A 104 PHE A 117 1 14 HELIX 3 AA3 SER A 128 ASN A 135 1 8 HELIX 4 AA4 HIS A 136 TYR A 139 5 4 HELIX 5 AA5 ASN A 169 LEU A 177 5 9 HELIX 6 AA6 ASP A 185 GLU A 201 1 17 HELIX 7 AA7 GLN A 212 SER A 222 1 11 HELIX 8 AA8 ILE A 232 MET A 234 5 3 HELIX 9 AA9 ASP A 263 LEU A 267 5 5 HELIX 10 AB1 LEU A 269 GLU A 284 1 16 SHEET 1 AA1 5 GLU A 121 GLY A 127 0 SHEET 2 AA1 5 THR A 92 SER A 98 1 N ILE A 95 O GLN A 123 SHEET 3 AA1 5 VAL A 141 ARG A 145 1 O ILE A 143 N SER A 98 SHEET 4 AA1 5 ARG A 256 TYR A 262 -1 O SER A 261 N MET A 142 SHEET 5 AA1 5 ALA A 153 ASP A 160 -1 N THR A 155 O MET A 260 SHEET 1 AA2 3 THR A 227 PRO A 230 0 SHEET 2 AA2 3 HIS A 162 PRO A 167 -1 N ILE A 165 O THR A 227 SHEET 3 AA2 3 PHE A 242 LYS A 246 -1 O GLU A 245 N PHE A 164 SHEET 1 AA3 2 PHE A 179 PHE A 182 0 SHEET 2 AA3 2 ALA A 206 VAL A 210 1 O ILE A 208 N GLU A 181 SHEET 1 AA4 2 GLU A 248 ILE A 249 0 SHEET 2 AA4 2 GLU A 252 PRO A 253 -1 O GLU A 252 N ILE A 249 LINK O GLN A 183 NA NA A 302 1555 1555 2.27 LINK O ASP A 211 NA NA A 302 1555 1555 2.32 LINK OG1 THR A 227 NA NA A 303 1555 1555 3.05 LINK O ILE A 228 NA NA A 303 1555 1555 2.96 LINK OG1 FLC A 301 NA NA A 302 1555 1555 2.47 LINK OHB FLC A 301 NA NA A 302 1555 1555 2.66 CRYST1 101.935 38.799 54.504 90.00 118.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009810 0.000000 0.005218 0.00000 SCALE2 0.000000 0.025774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020781 0.00000