data_7XCK # _entry.id 7XCK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7XCK pdb_00007xck 10.2210/pdb7xck/pdb WWPDB D_1300028543 ? ? EMDB EMD-33123 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-31 2 'Structure model' 1 1 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' em_admin 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_admin.last_update' 2 2 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7XCK _pdbx_database_status.recvd_initial_deposition_date 2022-03-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with S309 fab (local refinement)' _pdbx_database_related.db_id EMD-33123 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ls199236@sina.com _pdbx_contact_author.name_first Liu _pdbx_contact_author.name_last Sheng _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8109-9772 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gao, G.F.' 1 ? 'Qi, J.X.' 2 ? 'Zhao, Z.N.' 3 ? 'Xie, Y.F.' 4 ? 'Liu, S.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 4958 _citation.page_last ? _citation.title 'Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-022-32665-7 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, Z.' 1 ? primary 'Zhou, J.' 2 ? primary 'Tian, M.' 3 ? primary 'Huang, M.' 4 ? primary 'Liu, S.' 5 ? primary 'Xie, Y.' 6 ? primary 'Han, P.' 7 ? primary 'Bai, C.' 8 ? primary 'Han, P.' 9 ? primary 'Zheng, A.' 10 ? primary 'Fu, L.' 11 ? primary 'Gao, Y.' 12 ? primary 'Peng, Q.' 13 ? primary 'Li, Y.' 14 ? primary 'Chai, Y.' 15 ? primary 'Zhang, Z.' 16 ? primary 'Zhao, X.' 17 ? primary 'Song, H.' 18 ? primary 'Qi, J.' 19 ? primary 'Wang, Q.' 20 ? primary 'Wang, P.' 21 ? primary 'Gao, G.F.' 22 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'S309 heavy chain' 24573.471 1 ? ? ? ? 2 polymer man 'S309 light chain' 23204.697 1 ? ? ? ? 3 polymer man 'Spike protein S1' 30444.469 1 ? ? 'UNP residues 322-590' ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGY MELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC ; ;QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGY MELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC ; A ? 2 'polypeptide(L)' no no ;EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; ;EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; B ? 3 'polypeptide(L)' no no ;PTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFV IRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCN GVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLP FQQFGRDIADTTDAVRDPQTLEILDITPC ; ;PTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFV IRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCN GVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLP FQQFGRDIADTTDAVRDPQTLEILDITPC ; M ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLN n 1 7 SER n 1 8 GLY n 1 9 ALA n 1 10 GLU n 1 11 VAL n 1 12 LYS n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 ALA n 1 17 SER n 1 18 VAL n 1 19 LYS n 1 20 VAL n 1 21 SER n 1 22 CYS n 1 23 LYS n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 TYR n 1 28 PRO n 1 29 PHE n 1 30 THR n 1 31 SER n 1 32 TYR n 1 33 GLY n 1 34 ILE n 1 35 SER n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 GLN n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 MET n 1 49 GLY n 1 50 TRP n 1 51 ILE n 1 52 SER n 1 53 THR n 1 54 TYR n 1 55 ASN n 1 56 GLY n 1 57 ASN n 1 58 THR n 1 59 ASN n 1 60 TYR n 1 61 ALA n 1 62 GLN n 1 63 LYS n 1 64 PHE n 1 65 GLN n 1 66 GLY n 1 67 ARG n 1 68 VAL n 1 69 THR n 1 70 MET n 1 71 THR n 1 72 THR n 1 73 ASP n 1 74 THR n 1 75 SER n 1 76 THR n 1 77 THR n 1 78 THR n 1 79 GLY n 1 80 TYR n 1 81 MET n 1 82 GLU n 1 83 LEU n 1 84 ARG n 1 85 ARG n 1 86 LEU n 1 87 ARG n 1 88 SER n 1 89 ASP n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 TYR n 1 96 CYS n 1 97 ALA n 1 98 ARG n 1 99 ASP n 1 100 TYR n 1 101 THR n 1 102 ARG n 1 103 GLY n 1 104 ALA n 1 105 TRP n 1 106 PHE n 1 107 GLY n 1 108 GLU n 1 109 SER n 1 110 LEU n 1 111 ILE n 1 112 GLY n 1 113 GLY n 1 114 PHE n 1 115 ASP n 1 116 ASN n 1 117 TRP n 1 118 GLY n 1 119 GLN n 1 120 GLY n 1 121 THR n 1 122 LEU n 1 123 VAL n 1 124 THR n 1 125 VAL n 1 126 SER n 1 127 SER n 1 128 ALA n 1 129 SER n 1 130 THR n 1 131 LYS n 1 132 GLY n 1 133 PRO n 1 134 SER n 1 135 VAL n 1 136 PHE n 1 137 PRO n 1 138 LEU n 1 139 ALA n 1 140 PRO n 1 141 SER n 1 142 SER n 1 143 LYS n 1 144 SER n 1 145 THR n 1 146 SER n 1 147 GLY n 1 148 GLY n 1 149 THR n 1 150 ALA n 1 151 ALA n 1 152 LEU n 1 153 GLY n 1 154 CYS n 1 155 LEU n 1 156 VAL n 1 157 LYS n 1 158 ASP n 1 159 TYR n 1 160 PHE n 1 161 PRO n 1 162 GLU n 1 163 PRO n 1 164 VAL n 1 165 THR n 1 166 VAL n 1 167 SER n 1 168 TRP n 1 169 ASN n 1 170 SER n 1 171 GLY n 1 172 ALA n 1 173 LEU n 1 174 THR n 1 175 SER n 1 176 GLY n 1 177 VAL n 1 178 HIS n 1 179 THR n 1 180 PHE n 1 181 PRO n 1 182 ALA n 1 183 VAL n 1 184 LEU n 1 185 GLN n 1 186 SER n 1 187 SER n 1 188 GLY n 1 189 LEU n 1 190 TYR n 1 191 SER n 1 192 LEU n 1 193 SER n 1 194 SER n 1 195 VAL n 1 196 VAL n 1 197 THR n 1 198 VAL n 1 199 PRO n 1 200 SER n 1 201 SER n 1 202 SER n 1 203 LEU n 1 204 GLY n 1 205 THR n 1 206 GLN n 1 207 THR n 1 208 TYR n 1 209 ILE n 1 210 CYS n 1 211 ASN n 1 212 VAL n 1 213 ASN n 1 214 HIS n 1 215 LYS n 1 216 PRO n 1 217 SER n 1 218 ASN n 1 219 THR n 1 220 LYS n 1 221 VAL n 1 222 ASP n 1 223 LYS n 1 224 LYS n 1 225 VAL n 1 226 GLU n 1 227 PRO n 1 228 LYS n 1 229 SER n 1 230 CYS n 2 1 GLU n 2 2 ILE n 2 3 VAL n 2 4 LEU n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 GLY n 2 10 THR n 2 11 LEU n 2 12 SER n 2 13 LEU n 2 14 SER n 2 15 PRO n 2 16 GLY n 2 17 GLU n 2 18 ARG n 2 19 ALA n 2 20 THR n 2 21 LEU n 2 22 SER n 2 23 CYS n 2 24 ARG n 2 25 ALA n 2 26 SER n 2 27 GLN n 2 28 THR n 2 29 VAL n 2 30 SER n 2 31 SER n 2 32 THR n 2 33 SER n 2 34 LEU n 2 35 ALA n 2 36 TRP n 2 37 TYR n 2 38 GLN n 2 39 GLN n 2 40 LYS n 2 41 PRO n 2 42 GLY n 2 43 GLN n 2 44 ALA n 2 45 PRO n 2 46 ARG n 2 47 LEU n 2 48 LEU n 2 49 ILE n 2 50 TYR n 2 51 GLY n 2 52 ALA n 2 53 SER n 2 54 SER n 2 55 ARG n 2 56 ALA n 2 57 THR n 2 58 GLY n 2 59 ILE n 2 60 PRO n 2 61 ASP n 2 62 ARG n 2 63 PHE n 2 64 SER n 2 65 GLY n 2 66 SER n 2 67 GLY n 2 68 SER n 2 69 GLY n 2 70 THR n 2 71 ASP n 2 72 PHE n 2 73 THR n 2 74 LEU n 2 75 THR n 2 76 ILE n 2 77 SER n 2 78 ARG n 2 79 LEU n 2 80 GLU n 2 81 PRO n 2 82 GLU n 2 83 ASP n 2 84 PHE n 2 85 ALA n 2 86 VAL n 2 87 TYR n 2 88 TYR n 2 89 CYS n 2 90 GLN n 2 91 GLN n 2 92 HIS n 2 93 ASP n 2 94 THR n 2 95 SER n 2 96 LEU n 2 97 THR n 2 98 PHE n 2 99 GLY n 2 100 GLY n 2 101 GLY n 2 102 THR n 2 103 LYS n 2 104 VAL n 2 105 GLU n 2 106 ILE n 2 107 LYS n 2 108 ARG n 2 109 THR n 2 110 VAL n 2 111 ALA n 2 112 ALA n 2 113 PRO n 2 114 SER n 2 115 VAL n 2 116 PHE n 2 117 ILE n 2 118 PHE n 2 119 PRO n 2 120 PRO n 2 121 SER n 2 122 ASP n 2 123 GLU n 2 124 GLN n 2 125 LEU n 2 126 LYS n 2 127 SER n 2 128 GLY n 2 129 THR n 2 130 ALA n 2 131 SER n 2 132 VAL n 2 133 VAL n 2 134 CYS n 2 135 LEU n 2 136 LEU n 2 137 ASN n 2 138 ASN n 2 139 PHE n 2 140 TYR n 2 141 PRO n 2 142 ARG n 2 143 GLU n 2 144 ALA n 2 145 LYS n 2 146 VAL n 2 147 GLN n 2 148 TRP n 2 149 LYS n 2 150 VAL n 2 151 ASP n 2 152 ASN n 2 153 ALA n 2 154 LEU n 2 155 GLN n 2 156 SER n 2 157 GLY n 2 158 ASN n 2 159 SER n 2 160 GLN n 2 161 GLU n 2 162 SER n 2 163 VAL n 2 164 THR n 2 165 GLU n 2 166 GLN n 2 167 ASP n 2 168 SER n 2 169 LYS n 2 170 ASP n 2 171 SER n 2 172 THR n 2 173 TYR n 2 174 SER n 2 175 LEU n 2 176 SER n 2 177 SER n 2 178 THR n 2 179 LEU n 2 180 THR n 2 181 LEU n 2 182 SER n 2 183 LYS n 2 184 ALA n 2 185 ASP n 2 186 TYR n 2 187 GLU n 2 188 LYS n 2 189 HIS n 2 190 LYS n 2 191 VAL n 2 192 TYR n 2 193 ALA n 2 194 CYS n 2 195 GLU n 2 196 VAL n 2 197 THR n 2 198 HIS n 2 199 GLN n 2 200 GLY n 2 201 LEU n 2 202 SER n 2 203 SER n 2 204 PRO n 2 205 VAL n 2 206 THR n 2 207 LYS n 2 208 SER n 2 209 PHE n 2 210 ASN n 2 211 ARG n 2 212 GLY n 2 213 GLU n 2 214 CYS n 3 1 PRO n 3 2 THR n 3 3 GLU n 3 4 SER n 3 5 ILE n 3 6 VAL n 3 7 ARG n 3 8 PHE n 3 9 PRO n 3 10 ASN n 3 11 ILE n 3 12 THR n 3 13 ASN n 3 14 LEU n 3 15 CYS n 3 16 PRO n 3 17 PHE n 3 18 ASP n 3 19 GLU n 3 20 VAL n 3 21 PHE n 3 22 ASN n 3 23 ALA n 3 24 THR n 3 25 ARG n 3 26 PHE n 3 27 ALA n 3 28 SER n 3 29 VAL n 3 30 TYR n 3 31 ALA n 3 32 TRP n 3 33 ASN n 3 34 ARG n 3 35 LYS n 3 36 ARG n 3 37 ILE n 3 38 SER n 3 39 ASN n 3 40 CYS n 3 41 VAL n 3 42 ALA n 3 43 ASP n 3 44 TYR n 3 45 SER n 3 46 VAL n 3 47 LEU n 3 48 TYR n 3 49 ASN n 3 50 LEU n 3 51 ALA n 3 52 PRO n 3 53 PHE n 3 54 PHE n 3 55 THR n 3 56 PHE n 3 57 LYS n 3 58 CYS n 3 59 TYR n 3 60 GLY n 3 61 VAL n 3 62 SER n 3 63 PRO n 3 64 THR n 3 65 LYS n 3 66 LEU n 3 67 ASN n 3 68 ASP n 3 69 LEU n 3 70 CYS n 3 71 PHE n 3 72 THR n 3 73 ASN n 3 74 VAL n 3 75 TYR n 3 76 ALA n 3 77 ASP n 3 78 SER n 3 79 PHE n 3 80 VAL n 3 81 ILE n 3 82 ARG n 3 83 GLY n 3 84 ASP n 3 85 GLU n 3 86 VAL n 3 87 ARG n 3 88 GLN n 3 89 ILE n 3 90 ALA n 3 91 PRO n 3 92 GLY n 3 93 GLN n 3 94 THR n 3 95 GLY n 3 96 ASN n 3 97 ILE n 3 98 ALA n 3 99 ASP n 3 100 TYR n 3 101 ASN n 3 102 TYR n 3 103 LYS n 3 104 LEU n 3 105 PRO n 3 106 ASP n 3 107 ASP n 3 108 PHE n 3 109 THR n 3 110 GLY n 3 111 CYS n 3 112 VAL n 3 113 ILE n 3 114 ALA n 3 115 TRP n 3 116 ASN n 3 117 SER n 3 118 ASN n 3 119 LYS n 3 120 LEU n 3 121 ASP n 3 122 SER n 3 123 LYS n 3 124 VAL n 3 125 SER n 3 126 GLY n 3 127 ASN n 3 128 TYR n 3 129 ASN n 3 130 TYR n 3 131 LEU n 3 132 TYR n 3 133 ARG n 3 134 LEU n 3 135 PHE n 3 136 ARG n 3 137 LYS n 3 138 SER n 3 139 ASN n 3 140 LEU n 3 141 LYS n 3 142 PRO n 3 143 PHE n 3 144 GLU n 3 145 ARG n 3 146 ASP n 3 147 ILE n 3 148 SER n 3 149 THR n 3 150 GLU n 3 151 ILE n 3 152 TYR n 3 153 GLN n 3 154 ALA n 3 155 GLY n 3 156 ASN n 3 157 LYS n 3 158 PRO n 3 159 CYS n 3 160 ASN n 3 161 GLY n 3 162 VAL n 3 163 ALA n 3 164 GLY n 3 165 PHE n 3 166 ASN n 3 167 CYS n 3 168 TYR n 3 169 PHE n 3 170 PRO n 3 171 LEU n 3 172 ARG n 3 173 SER n 3 174 TYR n 3 175 SER n 3 176 PHE n 3 177 ARG n 3 178 PRO n 3 179 THR n 3 180 TYR n 3 181 GLY n 3 182 VAL n 3 183 GLY n 3 184 HIS n 3 185 GLN n 3 186 PRO n 3 187 TYR n 3 188 ARG n 3 189 VAL n 3 190 VAL n 3 191 VAL n 3 192 LEU n 3 193 SER n 3 194 PHE n 3 195 GLU n 3 196 LEU n 3 197 LEU n 3 198 HIS n 3 199 ALA n 3 200 PRO n 3 201 ALA n 3 202 THR n 3 203 VAL n 3 204 CYS n 3 205 GLY n 3 206 PRO n 3 207 LYS n 3 208 LYS n 3 209 SER n 3 210 THR n 3 211 ASN n 3 212 LEU n 3 213 VAL n 3 214 LYS n 3 215 ASN n 3 216 LYS n 3 217 CYS n 3 218 VAL n 3 219 ASN n 3 220 PHE n 3 221 ASN n 3 222 PHE n 3 223 ASN n 3 224 GLY n 3 225 LEU n 3 226 LYS n 3 227 GLY n 3 228 THR n 3 229 GLY n 3 230 VAL n 3 231 LEU n 3 232 THR n 3 233 GLU n 3 234 SER n 3 235 ASN n 3 236 LYS n 3 237 LYS n 3 238 PHE n 3 239 LEU n 3 240 PRO n 3 241 PHE n 3 242 GLN n 3 243 GLN n 3 244 PHE n 3 245 GLY n 3 246 ARG n 3 247 ASP n 3 248 ILE n 3 249 ALA n 3 250 ASP n 3 251 THR n 3 252 THR n 3 253 ASP n 3 254 ALA n 3 255 VAL n 3 256 ARG n 3 257 ASP n 3 258 PRO n 3 259 GLN n 3 260 THR n 3 261 LEU n 3 262 GLU n 3 263 ILE n 3 264 LEU n 3 265 ASP n 3 266 ILE n 3 267 THR n 3 268 PRO n 3 269 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 230 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 214 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 269 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 'DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 TRP 50 50 50 TRP TRP A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 TRP 105 105 105 TRP TRP A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 GLN 119 119 119 GLN GLN A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 SER 144 144 ? ? ? A . n A 1 145 THR 145 145 ? ? ? A . n A 1 146 SER 146 146 ? ? ? A . n A 1 147 GLY 147 147 ? ? ? A . n A 1 148 GLY 148 148 ? ? ? A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 CYS 154 154 154 CYS CYS A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 TRP 168 168 168 TRP TRP A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 HIS 178 178 178 HIS HIS A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 PRO 181 181 181 PRO PRO A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 GLN 185 185 185 GLN GLN A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 VAL 195 195 195 VAL VAL A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 THR 197 197 197 THR THR A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 PRO 199 199 199 PRO PRO A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 SER 202 202 202 SER SER A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 GLN 206 206 206 GLN GLN A . n A 1 207 THR 207 207 207 THR THR A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 CYS 210 210 210 CYS CYS A . n A 1 211 ASN 211 211 211 ASN ASN A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 HIS 214 214 214 HIS HIS A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 PRO 216 216 216 PRO PRO A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 ASN 218 218 218 ASN ASN A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 PRO 227 227 227 PRO PRO A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 SER 229 229 ? ? ? A . n A 1 230 CYS 230 230 ? ? ? A . n B 2 1 GLU 1 1 1 GLU GLU B . n B 2 2 ILE 2 2 2 ILE ILE B . n B 2 3 VAL 3 3 3 VAL VAL B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 THR 5 5 5 THR THR B . n B 2 6 GLN 6 6 6 GLN GLN B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 PRO 8 8 8 PRO PRO B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 THR 10 10 10 THR THR B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 LEU 13 13 13 LEU LEU B . n B 2 14 SER 14 14 14 SER SER B . n B 2 15 PRO 15 15 15 PRO PRO B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 GLU 17 17 17 GLU GLU B . n B 2 18 ARG 18 18 18 ARG ARG B . n B 2 19 ALA 19 19 19 ALA ALA B . n B 2 20 THR 20 20 20 THR THR B . n B 2 21 LEU 21 21 21 LEU LEU B . n B 2 22 SER 22 22 22 SER SER B . n B 2 23 CYS 23 23 23 CYS CYS B . n B 2 24 ARG 24 24 24 ARG ARG B . n B 2 25 ALA 25 25 25 ALA ALA B . n B 2 26 SER 26 26 26 SER SER B . n B 2 27 GLN 27 27 27 GLN GLN B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 VAL 29 29 29 VAL VAL B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 SER 31 31 31 SER SER B . n B 2 32 THR 32 32 32 THR THR B . n B 2 33 SER 33 33 33 SER SER B . n B 2 34 LEU 34 34 34 LEU LEU B . n B 2 35 ALA 35 35 35 ALA ALA B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 TYR 37 37 37 TYR TYR B . n B 2 38 GLN 38 38 38 GLN GLN B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 LYS 40 40 40 LYS LYS B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 GLN 43 43 43 GLN GLN B . n B 2 44 ALA 44 44 44 ALA ALA B . n B 2 45 PRO 45 45 45 PRO PRO B . n B 2 46 ARG 46 46 46 ARG ARG B . n B 2 47 LEU 47 47 47 LEU LEU B . n B 2 48 LEU 48 48 48 LEU LEU B . n B 2 49 ILE 49 49 49 ILE ILE B . n B 2 50 TYR 50 50 50 TYR TYR B . n B 2 51 GLY 51 51 51 GLY GLY B . n B 2 52 ALA 52 52 52 ALA ALA B . n B 2 53 SER 53 53 53 SER SER B . n B 2 54 SER 54 54 54 SER SER B . n B 2 55 ARG 55 55 55 ARG ARG B . n B 2 56 ALA 56 56 56 ALA ALA B . n B 2 57 THR 57 57 57 THR THR B . n B 2 58 GLY 58 58 58 GLY GLY B . n B 2 59 ILE 59 59 59 ILE ILE B . n B 2 60 PRO 60 60 60 PRO PRO B . n B 2 61 ASP 61 61 61 ASP ASP B . n B 2 62 ARG 62 62 62 ARG ARG B . n B 2 63 PHE 63 63 63 PHE PHE B . n B 2 64 SER 64 64 64 SER SER B . n B 2 65 GLY 65 65 65 GLY GLY B . n B 2 66 SER 66 66 66 SER SER B . n B 2 67 GLY 67 67 67 GLY GLY B . n B 2 68 SER 68 68 68 SER SER B . n B 2 69 GLY 69 69 69 GLY GLY B . n B 2 70 THR 70 70 70 THR THR B . n B 2 71 ASP 71 71 71 ASP ASP B . n B 2 72 PHE 72 72 72 PHE PHE B . n B 2 73 THR 73 73 73 THR THR B . n B 2 74 LEU 74 74 74 LEU LEU B . n B 2 75 THR 75 75 75 THR THR B . n B 2 76 ILE 76 76 76 ILE ILE B . n B 2 77 SER 77 77 77 SER SER B . n B 2 78 ARG 78 78 78 ARG ARG B . n B 2 79 LEU 79 79 79 LEU LEU B . n B 2 80 GLU 80 80 80 GLU GLU B . n B 2 81 PRO 81 81 81 PRO PRO B . n B 2 82 GLU 82 82 82 GLU GLU B . n B 2 83 ASP 83 83 83 ASP ASP B . n B 2 84 PHE 84 84 84 PHE PHE B . n B 2 85 ALA 85 85 85 ALA ALA B . n B 2 86 VAL 86 86 86 VAL VAL B . n B 2 87 TYR 87 87 87 TYR TYR B . n B 2 88 TYR 88 88 88 TYR TYR B . n B 2 89 CYS 89 89 89 CYS CYS B . n B 2 90 GLN 90 90 90 GLN GLN B . n B 2 91 GLN 91 91 91 GLN GLN B . n B 2 92 HIS 92 92 92 HIS HIS B . n B 2 93 ASP 93 93 93 ASP ASP B . n B 2 94 THR 94 94 94 THR THR B . n B 2 95 SER 95 95 95 SER SER B . n B 2 96 LEU 96 96 96 LEU LEU B . n B 2 97 THR 97 97 97 THR THR B . n B 2 98 PHE 98 98 98 PHE PHE B . n B 2 99 GLY 99 99 99 GLY GLY B . n B 2 100 GLY 100 100 100 GLY GLY B . n B 2 101 GLY 101 101 101 GLY GLY B . n B 2 102 THR 102 102 102 THR THR B . n B 2 103 LYS 103 103 103 LYS LYS B . n B 2 104 VAL 104 104 104 VAL VAL B . n B 2 105 GLU 105 105 105 GLU GLU B . n B 2 106 ILE 106 106 106 ILE ILE B . n B 2 107 LYS 107 107 107 LYS LYS B . n B 2 108 ARG 108 108 108 ARG ARG B . n B 2 109 THR 109 109 109 THR THR B . n B 2 110 VAL 110 110 110 VAL VAL B . n B 2 111 ALA 111 111 111 ALA ALA B . n B 2 112 ALA 112 112 112 ALA ALA B . n B 2 113 PRO 113 113 113 PRO PRO B . n B 2 114 SER 114 114 114 SER SER B . n B 2 115 VAL 115 115 115 VAL VAL B . n B 2 116 PHE 116 116 116 PHE PHE B . n B 2 117 ILE 117 117 117 ILE ILE B . n B 2 118 PHE 118 118 118 PHE PHE B . n B 2 119 PRO 119 119 119 PRO PRO B . n B 2 120 PRO 120 120 120 PRO PRO B . n B 2 121 SER 121 121 121 SER SER B . n B 2 122 ASP 122 122 122 ASP ASP B . n B 2 123 GLU 123 123 123 GLU GLU B . n B 2 124 GLN 124 124 124 GLN GLN B . n B 2 125 LEU 125 125 125 LEU LEU B . n B 2 126 LYS 126 126 126 LYS LYS B . n B 2 127 SER 127 127 127 SER SER B . n B 2 128 GLY 128 128 128 GLY GLY B . n B 2 129 THR 129 129 129 THR THR B . n B 2 130 ALA 130 130 130 ALA ALA B . n B 2 131 SER 131 131 131 SER SER B . n B 2 132 VAL 132 132 132 VAL VAL B . n B 2 133 VAL 133 133 133 VAL VAL B . n B 2 134 CYS 134 134 134 CYS CYS B . n B 2 135 LEU 135 135 135 LEU LEU B . n B 2 136 LEU 136 136 136 LEU LEU B . n B 2 137 ASN 137 137 137 ASN ASN B . n B 2 138 ASN 138 138 138 ASN ASN B . n B 2 139 PHE 139 139 139 PHE PHE B . n B 2 140 TYR 140 140 140 TYR TYR B . n B 2 141 PRO 141 141 141 PRO PRO B . n B 2 142 ARG 142 142 142 ARG ARG B . n B 2 143 GLU 143 143 143 GLU GLU B . n B 2 144 ALA 144 144 144 ALA ALA B . n B 2 145 LYS 145 145 145 LYS LYS B . n B 2 146 VAL 146 146 146 VAL VAL B . n B 2 147 GLN 147 147 147 GLN GLN B . n B 2 148 TRP 148 148 148 TRP TRP B . n B 2 149 LYS 149 149 149 LYS LYS B . n B 2 150 VAL 150 150 150 VAL VAL B . n B 2 151 ASP 151 151 151 ASP ASP B . n B 2 152 ASN 152 152 152 ASN ASN B . n B 2 153 ALA 153 153 153 ALA ALA B . n B 2 154 LEU 154 154 154 LEU LEU B . n B 2 155 GLN 155 155 155 GLN GLN B . n B 2 156 SER 156 156 156 SER SER B . n B 2 157 GLY 157 157 157 GLY GLY B . n B 2 158 ASN 158 158 158 ASN ASN B . n B 2 159 SER 159 159 159 SER SER B . n B 2 160 GLN 160 160 160 GLN GLN B . n B 2 161 GLU 161 161 161 GLU GLU B . n B 2 162 SER 162 162 162 SER SER B . n B 2 163 VAL 163 163 163 VAL VAL B . n B 2 164 THR 164 164 164 THR THR B . n B 2 165 GLU 165 165 165 GLU GLU B . n B 2 166 GLN 166 166 166 GLN GLN B . n B 2 167 ASP 167 167 167 ASP ASP B . n B 2 168 SER 168 168 168 SER SER B . n B 2 169 LYS 169 169 169 LYS LYS B . n B 2 170 ASP 170 170 170 ASP ASP B . n B 2 171 SER 171 171 171 SER SER B . n B 2 172 THR 172 172 172 THR THR B . n B 2 173 TYR 173 173 173 TYR TYR B . n B 2 174 SER 174 174 174 SER SER B . n B 2 175 LEU 175 175 175 LEU LEU B . n B 2 176 SER 176 176 176 SER SER B . n B 2 177 SER 177 177 177 SER SER B . n B 2 178 THR 178 178 178 THR THR B . n B 2 179 LEU 179 179 179 LEU LEU B . n B 2 180 THR 180 180 180 THR THR B . n B 2 181 LEU 181 181 181 LEU LEU B . n B 2 182 SER 182 182 182 SER SER B . n B 2 183 LYS 183 183 183 LYS LYS B . n B 2 184 ALA 184 184 184 ALA ALA B . n B 2 185 ASP 185 185 185 ASP ASP B . n B 2 186 TYR 186 186 186 TYR TYR B . n B 2 187 GLU 187 187 187 GLU GLU B . n B 2 188 LYS 188 188 188 LYS LYS B . n B 2 189 HIS 189 189 189 HIS HIS B . n B 2 190 LYS 190 190 190 LYS LYS B . n B 2 191 VAL 191 191 191 VAL VAL B . n B 2 192 TYR 192 192 192 TYR TYR B . n B 2 193 ALA 193 193 193 ALA ALA B . n B 2 194 CYS 194 194 194 CYS CYS B . n B 2 195 GLU 195 195 195 GLU GLU B . n B 2 196 VAL 196 196 196 VAL VAL B . n B 2 197 THR 197 197 197 THR THR B . n B 2 198 HIS 198 198 198 HIS HIS B . n B 2 199 GLN 199 199 199 GLN GLN B . n B 2 200 GLY 200 200 200 GLY GLY B . n B 2 201 LEU 201 201 201 LEU LEU B . n B 2 202 SER 202 202 202 SER SER B . n B 2 203 SER 203 203 203 SER SER B . n B 2 204 PRO 204 204 204 PRO PRO B . n B 2 205 VAL 205 205 205 VAL VAL B . n B 2 206 THR 206 206 206 THR THR B . n B 2 207 LYS 207 207 207 LYS LYS B . n B 2 208 SER 208 208 208 SER SER B . n B 2 209 PHE 209 209 209 PHE PHE B . n B 2 210 ASN 210 210 210 ASN ASN B . n B 2 211 ARG 211 211 211 ARG ARG B . n B 2 212 GLY 212 212 212 GLY GLY B . n B 2 213 GLU 213 213 ? ? ? B . n B 2 214 CYS 214 214 ? ? ? B . n C 3 1 PRO 1 322 322 PRO PRO M . n C 3 2 THR 2 323 323 THR THR M . n C 3 3 GLU 3 324 324 GLU GLU M . n C 3 4 SER 4 325 325 SER SER M . n C 3 5 ILE 5 326 326 ILE ILE M . n C 3 6 VAL 6 327 327 VAL VAL M . n C 3 7 ARG 7 328 328 ARG ARG M . n C 3 8 PHE 8 329 329 PHE PHE M . n C 3 9 PRO 9 330 330 PRO PRO M . n C 3 10 ASN 10 331 331 ASN ASN M . n C 3 11 ILE 11 332 332 ILE ILE M . n C 3 12 THR 12 333 333 THR THR M . n C 3 13 ASN 13 334 334 ASN ASN M . n C 3 14 LEU 14 335 335 LEU LEU M . n C 3 15 CYS 15 336 336 CYS CYS M . n C 3 16 PRO 16 337 337 PRO PRO M . n C 3 17 PHE 17 338 338 PHE PHE M . n C 3 18 ASP 18 339 339 ASP ASP M . n C 3 19 GLU 19 340 340 GLU GLU M . n C 3 20 VAL 20 341 341 VAL VAL M . n C 3 21 PHE 21 342 342 PHE PHE M . n C 3 22 ASN 22 343 343 ASN ASN M . n C 3 23 ALA 23 344 344 ALA ALA M . n C 3 24 THR 24 345 345 THR THR M . n C 3 25 ARG 25 346 346 ARG ARG M . n C 3 26 PHE 26 347 347 PHE PHE M . n C 3 27 ALA 27 348 348 ALA ALA M . n C 3 28 SER 28 349 349 SER SER M . n C 3 29 VAL 29 350 350 VAL VAL M . n C 3 30 TYR 30 351 351 TYR TYR M . n C 3 31 ALA 31 352 352 ALA ALA M . n C 3 32 TRP 32 353 353 TRP TRP M . n C 3 33 ASN 33 354 354 ASN ASN M . n C 3 34 ARG 34 355 355 ARG ARG M . n C 3 35 LYS 35 356 356 LYS LYS M . n C 3 36 ARG 36 357 357 ARG ARG M . n C 3 37 ILE 37 358 358 ILE ILE M . n C 3 38 SER 38 359 359 SER SER M . n C 3 39 ASN 39 360 360 ASN ASN M . n C 3 40 CYS 40 361 361 CYS CYS M . n C 3 41 VAL 41 362 362 VAL VAL M . n C 3 42 ALA 42 363 363 ALA ALA M . n C 3 43 ASP 43 364 364 ASP ASP M . n C 3 44 TYR 44 365 365 TYR TYR M . n C 3 45 SER 45 366 366 SER SER M . n C 3 46 VAL 46 367 367 VAL VAL M . n C 3 47 LEU 47 368 368 LEU LEU M . n C 3 48 TYR 48 369 369 TYR TYR M . n C 3 49 ASN 49 370 370 ASN ASN M . n C 3 50 LEU 50 371 371 LEU LEU M . n C 3 51 ALA 51 372 372 ALA ALA M . n C 3 52 PRO 52 373 373 PRO PRO M . n C 3 53 PHE 53 374 374 PHE PHE M . n C 3 54 PHE 54 375 375 PHE PHE M . n C 3 55 THR 55 376 376 THR THR M . n C 3 56 PHE 56 377 377 PHE PHE M . n C 3 57 LYS 57 378 378 LYS LYS M . n C 3 58 CYS 58 379 379 CYS CYS M . n C 3 59 TYR 59 380 380 TYR TYR M . n C 3 60 GLY 60 381 381 GLY GLY M . n C 3 61 VAL 61 382 382 VAL VAL M . n C 3 62 SER 62 383 383 SER SER M . n C 3 63 PRO 63 384 384 PRO PRO M . n C 3 64 THR 64 385 385 THR THR M . n C 3 65 LYS 65 386 386 LYS LYS M . n C 3 66 LEU 66 387 387 LEU LEU M . n C 3 67 ASN 67 388 388 ASN ASN M . n C 3 68 ASP 68 389 389 ASP ASP M . n C 3 69 LEU 69 390 390 LEU LEU M . n C 3 70 CYS 70 391 391 CYS CYS M . n C 3 71 PHE 71 392 392 PHE PHE M . n C 3 72 THR 72 393 393 THR THR M . n C 3 73 ASN 73 394 394 ASN ASN M . n C 3 74 VAL 74 395 395 VAL VAL M . n C 3 75 TYR 75 396 396 TYR TYR M . n C 3 76 ALA 76 397 397 ALA ALA M . n C 3 77 ASP 77 398 398 ASP ASP M . n C 3 78 SER 78 399 399 SER SER M . n C 3 79 PHE 79 400 400 PHE PHE M . n C 3 80 VAL 80 401 401 VAL VAL M . n C 3 81 ILE 81 402 402 ILE ILE M . n C 3 82 ARG 82 403 403 ARG ARG M . n C 3 83 GLY 83 404 404 GLY GLY M . n C 3 84 ASP 84 405 405 ASP ASP M . n C 3 85 GLU 85 406 406 GLU GLU M . n C 3 86 VAL 86 407 407 VAL VAL M . n C 3 87 ARG 87 408 408 ARG ARG M . n C 3 88 GLN 88 409 409 GLN GLN M . n C 3 89 ILE 89 410 410 ILE ILE M . n C 3 90 ALA 90 411 411 ALA ALA M . n C 3 91 PRO 91 412 412 PRO PRO M . n C 3 92 GLY 92 413 413 GLY GLY M . n C 3 93 GLN 93 414 414 GLN GLN M . n C 3 94 THR 94 415 415 THR THR M . n C 3 95 GLY 95 416 416 GLY GLY M . n C 3 96 ASN 96 417 417 ASN ASN M . n C 3 97 ILE 97 418 418 ILE ILE M . n C 3 98 ALA 98 419 419 ALA ALA M . n C 3 99 ASP 99 420 420 ASP ASP M . n C 3 100 TYR 100 421 421 TYR TYR M . n C 3 101 ASN 101 422 422 ASN ASN M . n C 3 102 TYR 102 423 423 TYR TYR M . n C 3 103 LYS 103 424 424 LYS LYS M . n C 3 104 LEU 104 425 425 LEU LEU M . n C 3 105 PRO 105 426 426 PRO PRO M . n C 3 106 ASP 106 427 427 ASP ASP M . n C 3 107 ASP 107 428 428 ASP ASP M . n C 3 108 PHE 108 429 429 PHE PHE M . n C 3 109 THR 109 430 430 THR THR M . n C 3 110 GLY 110 431 431 GLY GLY M . n C 3 111 CYS 111 432 432 CYS CYS M . n C 3 112 VAL 112 433 433 VAL VAL M . n C 3 113 ILE 113 434 434 ILE ILE M . n C 3 114 ALA 114 435 435 ALA ALA M . n C 3 115 TRP 115 436 436 TRP TRP M . n C 3 116 ASN 116 437 437 ASN ASN M . n C 3 117 SER 117 438 438 SER SER M . n C 3 118 ASN 118 439 439 ASN ASN M . n C 3 119 LYS 119 440 440 LYS LYS M . n C 3 120 LEU 120 441 441 LEU LEU M . n C 3 121 ASP 121 442 442 ASP ASP M . n C 3 122 SER 122 443 443 SER SER M . n C 3 123 LYS 123 444 444 LYS LYS M . n C 3 124 VAL 124 445 445 VAL VAL M . n C 3 125 SER 125 446 446 SER SER M . n C 3 126 GLY 126 447 447 GLY GLY M . n C 3 127 ASN 127 448 448 ASN ASN M . n C 3 128 TYR 128 449 449 TYR TYR M . n C 3 129 ASN 129 450 450 ASN ASN M . n C 3 130 TYR 130 451 451 TYR TYR M . n C 3 131 LEU 131 452 452 LEU LEU M . n C 3 132 TYR 132 453 453 TYR TYR M . n C 3 133 ARG 133 454 454 ARG ARG M . n C 3 134 LEU 134 455 455 LEU LEU M . n C 3 135 PHE 135 456 456 PHE PHE M . n C 3 136 ARG 136 457 457 ARG ARG M . n C 3 137 LYS 137 458 458 LYS LYS M . n C 3 138 SER 138 459 459 SER SER M . n C 3 139 ASN 139 460 460 ASN ASN M . n C 3 140 LEU 140 461 461 LEU LEU M . n C 3 141 LYS 141 462 462 LYS LYS M . n C 3 142 PRO 142 463 463 PRO PRO M . n C 3 143 PHE 143 464 464 PHE PHE M . n C 3 144 GLU 144 465 465 GLU GLU M . n C 3 145 ARG 145 466 466 ARG ARG M . n C 3 146 ASP 146 467 467 ASP ASP M . n C 3 147 ILE 147 468 468 ILE ILE M . n C 3 148 SER 148 469 469 SER SER M . n C 3 149 THR 149 470 470 THR THR M . n C 3 150 GLU 150 471 471 GLU GLU M . n C 3 151 ILE 151 472 472 ILE ILE M . n C 3 152 TYR 152 473 473 TYR TYR M . n C 3 153 GLN 153 474 474 GLN GLN M . n C 3 154 ALA 154 475 475 ALA ALA M . n C 3 155 GLY 155 476 476 GLY GLY M . n C 3 156 ASN 156 477 477 ASN ASN M . n C 3 157 LYS 157 478 478 LYS LYS M . n C 3 158 PRO 158 479 479 PRO PRO M . n C 3 159 CYS 159 480 480 CYS CYS M . n C 3 160 ASN 160 481 481 ASN ASN M . n C 3 161 GLY 161 482 482 GLY GLY M . n C 3 162 VAL 162 483 483 VAL VAL M . n C 3 163 ALA 163 484 484 ALA ALA M . n C 3 164 GLY 164 485 485 GLY GLY M . n C 3 165 PHE 165 486 486 PHE PHE M . n C 3 166 ASN 166 487 487 ASN ASN M . n C 3 167 CYS 167 488 488 CYS CYS M . n C 3 168 TYR 168 489 489 TYR TYR M . n C 3 169 PHE 169 490 490 PHE PHE M . n C 3 170 PRO 170 491 491 PRO PRO M . n C 3 171 LEU 171 492 492 LEU LEU M . n C 3 172 ARG 172 493 493 ARG ARG M . n C 3 173 SER 173 494 494 SER SER M . n C 3 174 TYR 174 495 495 TYR TYR M . n C 3 175 SER 175 496 496 SER SER M . n C 3 176 PHE 176 497 497 PHE PHE M . n C 3 177 ARG 177 498 498 ARG ARG M . n C 3 178 PRO 178 499 499 PRO PRO M . n C 3 179 THR 179 500 500 THR THR M . n C 3 180 TYR 180 501 501 TYR TYR M . n C 3 181 GLY 181 502 502 GLY GLY M . n C 3 182 VAL 182 503 503 VAL VAL M . n C 3 183 GLY 183 504 504 GLY GLY M . n C 3 184 HIS 184 505 505 HIS HIS M . n C 3 185 GLN 185 506 506 GLN GLN M . n C 3 186 PRO 186 507 507 PRO PRO M . n C 3 187 TYR 187 508 508 TYR TYR M . n C 3 188 ARG 188 509 509 ARG ARG M . n C 3 189 VAL 189 510 510 VAL VAL M . n C 3 190 VAL 190 511 511 VAL VAL M . n C 3 191 VAL 191 512 512 VAL VAL M . n C 3 192 LEU 192 513 513 LEU LEU M . n C 3 193 SER 193 514 514 SER SER M . n C 3 194 PHE 194 515 515 PHE PHE M . n C 3 195 GLU 195 516 516 GLU GLU M . n C 3 196 LEU 196 517 517 LEU LEU M . n C 3 197 LEU 197 518 518 LEU LEU M . n C 3 198 HIS 198 519 519 HIS HIS M . n C 3 199 ALA 199 520 520 ALA ALA M . n C 3 200 PRO 200 521 521 PRO PRO M . n C 3 201 ALA 201 522 522 ALA ALA M . n C 3 202 THR 202 523 523 THR THR M . n C 3 203 VAL 203 524 524 VAL VAL M . n C 3 204 CYS 204 525 525 CYS CYS M . n C 3 205 GLY 205 526 526 GLY GLY M . n C 3 206 PRO 206 527 527 PRO PRO M . n C 3 207 LYS 207 528 528 LYS LYS M . n C 3 208 LYS 208 529 529 LYS LYS M . n C 3 209 SER 209 530 530 SER SER M . n C 3 210 THR 210 531 531 THR THR M . n C 3 211 ASN 211 532 532 ASN ASN M . n C 3 212 LEU 212 533 533 LEU LEU M . n C 3 213 VAL 213 534 534 VAL VAL M . n C 3 214 LYS 214 535 535 LYS LYS M . n C 3 215 ASN 215 536 536 ASN ASN M . n C 3 216 LYS 216 537 537 LYS LYS M . n C 3 217 CYS 217 538 538 CYS CYS M . n C 3 218 VAL 218 539 539 VAL VAL M . n C 3 219 ASN 219 540 540 ASN ASN M . n C 3 220 PHE 220 541 541 PHE PHE M . n C 3 221 ASN 221 542 542 ASN ASN M . n C 3 222 PHE 222 543 543 PHE PHE M . n C 3 223 ASN 223 544 544 ASN ASN M . n C 3 224 GLY 224 545 545 GLY GLY M . n C 3 225 LEU 225 546 546 LEU LEU M . n C 3 226 LYS 226 547 547 LYS LYS M . n C 3 227 GLY 227 548 548 GLY GLY M . n C 3 228 THR 228 549 549 THR THR M . n C 3 229 GLY 229 550 550 GLY GLY M . n C 3 230 VAL 230 551 551 VAL VAL M . n C 3 231 LEU 231 552 552 LEU LEU M . n C 3 232 THR 232 553 553 THR THR M . n C 3 233 GLU 233 554 554 GLU GLU M . n C 3 234 SER 234 555 555 SER SER M . n C 3 235 ASN 235 556 556 ASN ASN M . n C 3 236 LYS 236 557 557 LYS LYS M . n C 3 237 LYS 237 558 558 LYS LYS M . n C 3 238 PHE 238 559 559 PHE PHE M . n C 3 239 LEU 239 560 560 LEU LEU M . n C 3 240 PRO 240 561 561 PRO PRO M . n C 3 241 PHE 241 562 562 PHE PHE M . n C 3 242 GLN 242 563 563 GLN GLN M . n C 3 243 GLN 243 564 564 GLN GLN M . n C 3 244 PHE 244 565 565 PHE PHE M . n C 3 245 GLY 245 566 566 GLY GLY M . n C 3 246 ARG 246 567 567 ARG ARG M . n C 3 247 ASP 247 568 568 ASP ASP M . n C 3 248 ILE 248 569 569 ILE ILE M . n C 3 249 ALA 249 570 570 ALA ALA M . n C 3 250 ASP 250 571 571 ASP ASP M . n C 3 251 THR 251 572 572 THR THR M . n C 3 252 THR 252 573 573 THR THR M . n C 3 253 ASP 253 574 574 ASP ASP M . n C 3 254 ALA 254 575 575 ALA ALA M . n C 3 255 VAL 255 576 576 VAL VAL M . n C 3 256 ARG 256 577 577 ARG ARG M . n C 3 257 ASP 257 578 578 ASP ASP M . n C 3 258 PRO 258 579 579 PRO PRO M . n C 3 259 GLN 259 580 580 GLN GLN M . n C 3 260 THR 260 581 581 THR THR M . n C 3 261 LEU 261 582 582 LEU LEU M . n C 3 262 GLU 262 583 583 GLU GLU M . n C 3 263 ILE 263 584 584 ILE ILE M . n C 3 264 LEU 264 585 585 LEU LEU M . n C 3 265 ASP 265 586 586 ASP ASP M . n C 3 266 ILE 266 587 587 ILE ILE M . n C 3 267 THR 267 588 588 THR THR M . n C 3 268 PRO 268 589 589 PRO PRO M . n C 3 269 CYS 269 590 590 CYS CYS M . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 C NAG 1 M NAG 591 n D 4 NAG 2 C NAG 2 M NAG 592 n D 4 FUC 3 C FUC 3 M FUC 593 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 FUC ? ? FUC ? ? 'SUBJECT OF INVESTIGATION' ? 2 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7XCK _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7XCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7XCK _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7XCK _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 5621 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.706 ? 7644 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.563 ? 2028 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.051 ? 858 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 981 ? f_plane_restr ? ? # _struct.entry_id 7XCK _struct.title 'Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with S309 fab (local refinement)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7XCK _struct_keywords.text 'VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7XCK 7XCK ? 1 ? 1 2 PDB 7XCK 7XCK ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;PTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFV IRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP FQQFGRDIADTTDAVRDPQTLEILDITPC ; 322 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7XCK A 1 ? 230 ? 7XCK 1 ? 230 ? 1 230 2 2 7XCK B 1 ? 214 ? 7XCK 1 ? 214 ? 1 214 3 3 7XCK M 1 ? 269 ? P0DTC2 322 ? 590 ? 322 590 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 7XCK ASP M 18 ? UNP P0DTC2 GLY 339 variant 339 1 3 7XCK LEU M 50 ? UNP P0DTC2 SER 371 variant 371 2 3 7XCK PRO M 52 ? UNP P0DTC2 SER 373 variant 373 3 3 7XCK PHE M 54 ? UNP P0DTC2 SER 375 variant 375 4 3 7XCK ASN M 96 ? UNP P0DTC2 LYS 417 variant 417 5 3 7XCK LYS M 119 ? UNP P0DTC2 ASN 440 variant 440 6 3 7XCK SER M 125 ? UNP P0DTC2 GLY 446 variant 446 7 3 7XCK ASN M 156 ? UNP P0DTC2 SER 477 variant 477 8 3 7XCK LYS M 157 ? UNP P0DTC2 THR 478 variant 478 9 3 7XCK ALA M 163 ? UNP P0DTC2 GLU 484 variant 484 10 3 7XCK ARG M 172 ? UNP P0DTC2 GLN 493 variant 493 11 3 7XCK SER M 175 ? UNP P0DTC2 GLY 496 variant 496 12 3 7XCK ARG M 177 ? UNP P0DTC2 GLN 498 variant 498 13 3 7XCK TYR M 180 ? UNP P0DTC2 ASN 501 variant 501 14 3 7XCK HIS M 184 ? UNP P0DTC2 TYR 505 variant 505 15 3 7XCK LYS M 226 ? UNP P0DTC2 THR 547 variant 547 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 28 ? TYR A 32 ? PRO A 28 TYR A 32 5 ? 5 HELX_P HELX_P2 AA2 GLN A 62 ? GLN A 65 ? GLN A 62 GLN A 65 5 ? 4 HELX_P HELX_P3 AA3 ARG A 87 ? THR A 91 ? ARG A 87 THR A 91 5 ? 5 HELX_P HELX_P4 AA4 SER B 30 ? THR B 32 ? SER B 30 THR B 32 5 ? 3 HELX_P HELX_P5 AA5 GLU B 80 ? PHE B 84 ? GLU B 80 PHE B 84 5 ? 5 HELX_P HELX_P6 AA6 LYS B 183 ? LYS B 188 ? LYS B 183 LYS B 188 1 ? 6 HELX_P HELX_P7 AA7 PHE C 17 ? ASN C 22 ? PHE M 338 ASN M 343 1 ? 6 HELX_P HELX_P8 AA8 TYR C 44 ? TYR C 48 ? TYR M 365 TYR M 369 5 ? 5 HELX_P HELX_P9 AA9 SER C 62 ? LEU C 69 ? SER M 383 LEU M 390 5 ? 8 HELX_P HELX_P10 AB1 ARG C 82 ? ILE C 89 ? ARG M 403 ILE M 410 5 ? 8 HELX_P HELX_P11 AB2 GLY C 95 ? ASN C 101 ? GLY M 416 ASN M 422 1 ? 7 HELX_P HELX_P12 AB3 SER C 117 ? SER C 122 ? SER M 438 SER M 443 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 22 A CYS 96 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 154 SG ? ? ? 1_555 A CYS 210 SG ? ? A CYS 154 A CYS 210 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 89 SG ? ? B CYS 23 B CYS 89 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf4 disulf ? ? B CYS 134 SG ? ? ? 1_555 B CYS 194 SG ? ? B CYS 134 B CYS 194 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf5 disulf ? ? C CYS 15 SG ? ? ? 1_555 C CYS 40 SG ? ? M CYS 336 M CYS 361 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? C CYS 58 SG ? ? ? 1_555 C CYS 111 SG ? ? M CYS 379 M CYS 432 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf7 disulf ? ? C CYS 159 SG ? ? ? 1_555 C CYS 167 SG ? ? M CYS 480 M CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf8 disulf ? ? C CYS 217 SG ? ? ? 1_555 C CYS 269 SG ? ? M CYS 538 M CYS 590 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale1 covale one ? C ASN 22 ND2 ? ? ? 1_555 D NAG . C1 ? ? M ASN 343 C NAG 1 1_555 ? ? ? ? ? ? ? 1.467 ? N-Glycosylation covale2 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale3 covale both ? D NAG . O6 ? ? ? 1_555 D FUC . C1 ? ? C NAG 1 C FUC 3 1_555 ? ? ? ? ? ? ? 1.421 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN C 22 ? NAG C 1 ? 1_555 ASN M 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 CYS A 22 ? CYS A 96 ? CYS A 22 ? 1_555 CYS A 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 154 ? CYS A 210 ? CYS A 154 ? 1_555 CYS A 210 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 23 ? CYS B 89 ? CYS B 23 ? 1_555 CYS B 89 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 134 ? CYS B 194 ? CYS B 134 ? 1_555 CYS B 194 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS C 15 ? CYS C 40 ? CYS M 336 ? 1_555 CYS M 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS C 58 ? CYS C 111 ? CYS M 379 ? 1_555 CYS M 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS C 159 ? CYS C 167 ? CYS M 480 ? 1_555 CYS M 488 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS C 217 ? CYS C 269 ? CYS M 538 ? 1_555 CYS M 590 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 160 A . ? PHE 160 A PRO 161 A ? PRO 161 A 1 -0.44 2 SER 7 B . ? SER 7 B PRO 8 B ? PRO 8 B 1 -5.53 3 TYR 140 B . ? TYR 140 B PRO 141 B ? PRO 141 B 1 0.35 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 3 ? AA7 ? 4 ? AA8 ? 6 ? AA9 ? 4 ? AB1 ? 4 ? AB2 ? 3 ? AB3 ? 6 ? AB4 ? 5 ? AB5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel AB3 1 2 ? parallel AB3 2 3 ? anti-parallel AB3 3 4 ? anti-parallel AB3 4 5 ? anti-parallel AB3 5 6 ? anti-parallel AB4 1 2 ? anti-parallel AB4 2 3 ? anti-parallel AB4 3 4 ? anti-parallel AB4 4 5 ? anti-parallel AB5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? GLN A 6 ? GLN A 3 GLN A 6 AA1 2 SER A 17 ? SER A 25 ? SER A 17 SER A 25 AA1 3 THR A 78 ? ARG A 84 ? THR A 78 ARG A 84 AA1 4 VAL A 68 ? ASP A 73 ? VAL A 68 ASP A 73 AA2 1 THR A 58 ? TYR A 60 ? THR A 58 TYR A 60 AA2 2 LEU A 45 ? ILE A 51 ? LEU A 45 ILE A 51 AA2 3 ILE A 34 ? GLN A 39 ? ILE A 34 GLN A 39 AA2 4 ALA A 92 ? ARG A 98 ? ALA A 92 ARG A 98 AA2 5 ASN A 116 ? TRP A 117 ? ASN A 116 TRP A 117 AA3 1 THR A 58 ? TYR A 60 ? THR A 58 TYR A 60 AA3 2 LEU A 45 ? ILE A 51 ? LEU A 45 ILE A 51 AA3 3 ILE A 34 ? GLN A 39 ? ILE A 34 GLN A 39 AA3 4 ALA A 92 ? ARG A 98 ? ALA A 92 ARG A 98 AA3 5 THR A 121 ? VAL A 123 ? THR A 121 VAL A 123 AA4 1 SER A 134 ? LEU A 138 ? SER A 134 LEU A 138 AA4 2 ALA A 150 ? TYR A 159 ? ALA A 150 TYR A 159 AA4 3 TYR A 190 ? VAL A 198 ? TYR A 190 VAL A 198 AA4 4 VAL A 177 ? THR A 179 ? VAL A 177 THR A 179 AA5 1 SER A 134 ? LEU A 138 ? SER A 134 LEU A 138 AA5 2 ALA A 150 ? TYR A 159 ? ALA A 150 TYR A 159 AA5 3 TYR A 190 ? VAL A 198 ? TYR A 190 VAL A 198 AA5 4 VAL A 183 ? LEU A 184 ? VAL A 183 LEU A 184 AA6 1 THR A 165 ? TRP A 168 ? THR A 165 TRP A 168 AA6 2 ILE A 209 ? HIS A 214 ? ILE A 209 HIS A 214 AA6 3 THR A 219 ? LYS A 224 ? THR A 219 LYS A 224 AA7 1 LEU B 4 ? SER B 7 ? LEU B 4 SER B 7 AA7 2 ALA B 19 ? ALA B 25 ? ALA B 19 ALA B 25 AA7 3 ASP B 71 ? ILE B 76 ? ASP B 71 ILE B 76 AA7 4 PHE B 63 ? SER B 68 ? PHE B 63 SER B 68 AA8 1 THR B 10 ? LEU B 13 ? THR B 10 LEU B 13 AA8 2 THR B 102 ? ILE B 106 ? THR B 102 ILE B 106 AA8 3 VAL B 86 ? GLN B 91 ? VAL B 86 GLN B 91 AA8 4 LEU B 34 ? GLN B 39 ? LEU B 34 GLN B 39 AA8 5 ARG B 46 ? TYR B 50 ? ARG B 46 TYR B 50 AA8 6 SER B 54 ? ARG B 55 ? SER B 54 ARG B 55 AA9 1 THR B 10 ? LEU B 13 ? THR B 10 LEU B 13 AA9 2 THR B 102 ? ILE B 106 ? THR B 102 ILE B 106 AA9 3 VAL B 86 ? GLN B 91 ? VAL B 86 GLN B 91 AA9 4 THR B 97 ? PHE B 98 ? THR B 97 PHE B 98 AB1 1 PHE B 116 ? PHE B 118 ? PHE B 116 PHE B 118 AB1 2 THR B 129 ? PHE B 139 ? THR B 129 PHE B 139 AB1 3 TYR B 173 ? SER B 182 ? TYR B 173 SER B 182 AB1 4 GLN B 160 ? VAL B 163 ? GLN B 160 VAL B 163 AB2 1 LYS B 145 ? LYS B 149 ? LYS B 145 LYS B 149 AB2 2 VAL B 191 ? THR B 197 ? VAL B 191 THR B 197 AB2 3 VAL B 205 ? ASN B 210 ? VAL B 205 ASN B 210 AB3 1 SER C 4 ? ARG C 7 ? SER M 325 ARG M 328 AB3 2 CYS C 217 ? PHE C 222 ? CYS M 538 PHE M 543 AB3 3 LEU C 225 ? GLU C 233 ? LEU M 546 GLU M 554 AB3 4 ILE C 263 ? THR C 267 ? ILE M 584 THR M 588 AB3 5 THR C 252 ? ARG C 256 ? THR M 573 ARG M 577 AB3 6 PHE C 244 ? ARG C 246 ? PHE M 565 ARG M 567 AB4 1 ASN C 33 ? ILE C 37 ? ASN M 354 ILE M 358 AB4 2 ASN C 73 ? ILE C 81 ? ASN M 394 ILE M 402 AB4 3 TYR C 187 ? GLU C 195 ? TYR M 508 GLU M 516 AB4 4 GLY C 110 ? ASN C 116 ? GLY M 431 ASN M 437 AB4 5 THR C 55 ? CYS C 58 ? THR M 376 CYS M 379 AB5 1 LEU C 131 ? ARG C 133 ? LEU M 452 ARG M 454 AB5 2 LEU C 171 ? SER C 173 ? LEU M 492 SER M 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL A 5 O LYS A 23 ? O LYS A 23 AA1 2 3 N CYS A 22 ? N CYS A 22 O GLY A 79 ? O GLY A 79 AA1 3 4 O GLU A 82 ? O GLU A 82 N THR A 69 ? N THR A 69 AA2 1 2 O ASN A 59 ? O ASN A 59 N TRP A 50 ? N TRP A 50 AA2 2 3 O MET A 48 ? O MET A 48 N TRP A 36 ? N TRP A 36 AA2 3 4 N SER A 35 ? N SER A 35 O ALA A 97 ? O ALA A 97 AA2 4 5 N ARG A 98 ? N ARG A 98 O ASN A 116 ? O ASN A 116 AA3 1 2 O ASN A 59 ? O ASN A 59 N TRP A 50 ? N TRP A 50 AA3 2 3 O MET A 48 ? O MET A 48 N TRP A 36 ? N TRP A 36 AA3 3 4 N SER A 35 ? N SER A 35 O ALA A 97 ? O ALA A 97 AA3 4 5 N ALA A 92 ? N ALA A 92 O VAL A 123 ? O VAL A 123 AA4 1 2 N PHE A 136 ? N PHE A 136 O LEU A 155 ? O LEU A 155 AA4 2 3 N LEU A 152 ? N LEU A 152 O VAL A 196 ? O VAL A 196 AA4 3 4 O VAL A 195 ? O VAL A 195 N HIS A 178 ? N HIS A 178 AA5 1 2 N PHE A 136 ? N PHE A 136 O LEU A 155 ? O LEU A 155 AA5 2 3 N LEU A 152 ? N LEU A 152 O VAL A 196 ? O VAL A 196 AA5 3 4 O SER A 191 ? O SER A 191 N VAL A 183 ? N VAL A 183 AA6 1 2 N THR A 165 ? N THR A 165 O ASN A 213 ? O ASN A 213 AA6 2 3 N VAL A 212 ? N VAL A 212 O VAL A 221 ? O VAL A 221 AA7 1 2 N THR B 5 ? N THR B 5 O ARG B 24 ? O ARG B 24 AA7 2 3 N CYS B 23 ? N CYS B 23 O PHE B 72 ? O PHE B 72 AA7 3 4 O THR B 73 ? O THR B 73 N SER B 66 ? N SER B 66 AA8 1 2 N LEU B 11 ? N LEU B 11 O GLU B 105 ? O GLU B 105 AA8 2 3 O THR B 102 ? O THR B 102 N TYR B 87 ? N TYR B 87 AA8 3 4 O GLN B 90 ? O GLN B 90 N ALA B 35 ? N ALA B 35 AA8 4 5 N TRP B 36 ? N TRP B 36 O LEU B 48 ? O LEU B 48 AA8 5 6 N TYR B 50 ? N TYR B 50 O SER B 54 ? O SER B 54 AA9 1 2 N LEU B 11 ? N LEU B 11 O GLU B 105 ? O GLU B 105 AA9 2 3 O THR B 102 ? O THR B 102 N TYR B 87 ? N TYR B 87 AA9 3 4 N GLN B 91 ? N GLN B 91 O THR B 97 ? O THR B 97 AB1 1 2 N PHE B 116 ? N PHE B 116 O LEU B 135 ? O LEU B 135 AB1 2 3 N VAL B 132 ? N VAL B 132 O LEU B 179 ? O LEU B 179 AB1 3 4 O THR B 178 ? O THR B 178 N GLN B 160 ? N GLN B 160 AB2 1 2 N GLN B 147 ? N GLN B 147 O GLU B 195 ? O GLU B 195 AB2 2 3 N CYS B 194 ? N CYS B 194 O LYS B 207 ? O LYS B 207 AB3 1 2 N ILE C 5 ? N ILE M 326 O ASN C 219 ? O ASN M 540 AB3 2 3 N VAL C 218 ? N VAL M 539 O GLY C 229 ? O GLY M 550 AB3 3 4 N VAL C 230 ? N VAL M 551 O THR C 267 ? O THR M 588 AB3 4 5 O ILE C 266 ? O ILE M 587 N ASP C 253 ? N ASP M 574 AB3 5 6 O ASP C 253 ? O ASP M 574 N GLY C 245 ? N GLY M 566 AB4 1 2 N ILE C 37 ? N ILE M 358 O VAL C 74 ? O VAL M 395 AB4 2 3 N PHE C 79 ? N PHE M 400 O VAL C 189 ? O VAL M 510 AB4 3 4 O VAL C 190 ? O VAL M 511 N ILE C 113 ? N ILE M 434 AB4 4 5 O VAL C 112 ? O VAL M 433 N LYS C 57 ? N LYS M 378 AB5 1 2 N TYR C 132 ? N TYR M 453 O ARG C 172 ? O ARG M 493 # _pdbx_entry_details.entry_id 7XCK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 M _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 369 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 M _pdbx_validate_close_contact.auth_comp_id_2 PRO _pdbx_validate_close_contact.auth_seq_id_2 384 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 161 ? ? -79.54 -160.20 2 1 LEU B 13 ? ? -125.68 -168.76 3 1 PRO B 15 ? ? -69.63 84.23 4 1 ALA B 52 ? ? 71.42 -8.95 5 1 SER B 53 ? ? -131.11 -37.57 6 1 ALA B 85 ? ? -161.33 -167.52 7 1 SER B 95 ? ? 61.49 -146.84 8 1 ASN B 137 ? ? -78.17 -166.51 9 1 ASP B 151 ? ? 60.15 -13.35 10 1 ASN B 152 ? ? -148.87 -6.46 11 1 ASN B 158 ? ? -94.39 56.38 12 1 PRO M 373 ? ? -76.12 45.87 13 1 THR M 500 ? ? -98.17 33.60 14 1 ALA M 570 ? ? -92.32 32.99 # _em_3d_fitting.entry_id 7XCK _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7XCK _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 517940 _em_3d_reconstruction.resolution 2.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with S309 fab (local refinement)' RECOMBINANT COMPLEX '1, 2, 3' ? ? 2 1 ? 'S309 fab' RECOMBINANT COMPLEX '1, 2' ? ? 3 1 ? 'SARS-CoV-2 Omicron RBD' RECOMBINANT COMPLEX 3 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7XCK _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 5000 _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7XCK _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7XCK _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 144 ? A SER 144 2 1 Y 1 A THR 145 ? A THR 145 3 1 Y 1 A SER 146 ? A SER 146 4 1 Y 1 A GLY 147 ? A GLY 147 5 1 Y 1 A GLY 148 ? A GLY 148 6 1 Y 1 A SER 229 ? A SER 229 7 1 Y 1 A CYS 230 ? A CYS 230 8 1 Y 1 B GLU 213 ? B GLU 213 9 1 Y 1 B CYS 214 ? B CYS 214 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FUC C1 C N R 88 FUC C2 C N S 89 FUC C3 C N R 90 FUC C4 C N S 91 FUC C5 C N S 92 FUC C6 C N N 93 FUC O1 O N N 94 FUC O2 O N N 95 FUC O3 O N N 96 FUC O4 O N N 97 FUC O5 O N N 98 FUC H1 H N N 99 FUC H2 H N N 100 FUC H3 H N N 101 FUC H4 H N N 102 FUC H5 H N N 103 FUC H61 H N N 104 FUC H62 H N N 105 FUC H63 H N N 106 FUC HO1 H N N 107 FUC HO2 H N N 108 FUC HO3 H N N 109 FUC HO4 H N N 110 GLN N N N N 111 GLN CA C N S 112 GLN C C N N 113 GLN O O N N 114 GLN CB C N N 115 GLN CG C N N 116 GLN CD C N N 117 GLN OE1 O N N 118 GLN NE2 N N N 119 GLN OXT O N N 120 GLN H H N N 121 GLN H2 H N N 122 GLN HA H N N 123 GLN HB2 H N N 124 GLN HB3 H N N 125 GLN HG2 H N N 126 GLN HG3 H N N 127 GLN HE21 H N N 128 GLN HE22 H N N 129 GLN HXT H N N 130 GLU N N N N 131 GLU CA C N S 132 GLU C C N N 133 GLU O O N N 134 GLU CB C N N 135 GLU CG C N N 136 GLU CD C N N 137 GLU OE1 O N N 138 GLU OE2 O N N 139 GLU OXT O N N 140 GLU H H N N 141 GLU H2 H N N 142 GLU HA H N N 143 GLU HB2 H N N 144 GLU HB3 H N N 145 GLU HG2 H N N 146 GLU HG3 H N N 147 GLU HE2 H N N 148 GLU HXT H N N 149 GLY N N N N 150 GLY CA C N N 151 GLY C C N N 152 GLY O O N N 153 GLY OXT O N N 154 GLY H H N N 155 GLY H2 H N N 156 GLY HA2 H N N 157 GLY HA3 H N N 158 GLY HXT H N N 159 HIS N N N N 160 HIS CA C N S 161 HIS C C N N 162 HIS O O N N 163 HIS CB C N N 164 HIS CG C Y N 165 HIS ND1 N Y N 166 HIS CD2 C Y N 167 HIS CE1 C Y N 168 HIS NE2 N Y N 169 HIS OXT O N N 170 HIS H H N N 171 HIS H2 H N N 172 HIS HA H N N 173 HIS HB2 H N N 174 HIS HB3 H N N 175 HIS HD1 H N N 176 HIS HD2 H N N 177 HIS HE1 H N N 178 HIS HE2 H N N 179 HIS HXT H N N 180 ILE N N N N 181 ILE CA C N S 182 ILE C C N N 183 ILE O O N N 184 ILE CB C N S 185 ILE CG1 C N N 186 ILE CG2 C N N 187 ILE CD1 C N N 188 ILE OXT O N N 189 ILE H H N N 190 ILE H2 H N N 191 ILE HA H N N 192 ILE HB H N N 193 ILE HG12 H N N 194 ILE HG13 H N N 195 ILE HG21 H N N 196 ILE HG22 H N N 197 ILE HG23 H N N 198 ILE HD11 H N N 199 ILE HD12 H N N 200 ILE HD13 H N N 201 ILE HXT H N N 202 LEU N N N N 203 LEU CA C N S 204 LEU C C N N 205 LEU O O N N 206 LEU CB C N N 207 LEU CG C N N 208 LEU CD1 C N N 209 LEU CD2 C N N 210 LEU OXT O N N 211 LEU H H N N 212 LEU H2 H N N 213 LEU HA H N N 214 LEU HB2 H N N 215 LEU HB3 H N N 216 LEU HG H N N 217 LEU HD11 H N N 218 LEU HD12 H N N 219 LEU HD13 H N N 220 LEU HD21 H N N 221 LEU HD22 H N N 222 LEU HD23 H N N 223 LEU HXT H N N 224 LYS N N N N 225 LYS CA C N S 226 LYS C C N N 227 LYS O O N N 228 LYS CB C N N 229 LYS CG C N N 230 LYS CD C N N 231 LYS CE C N N 232 LYS NZ N N N 233 LYS OXT O N N 234 LYS H H N N 235 LYS H2 H N N 236 LYS HA H N N 237 LYS HB2 H N N 238 LYS HB3 H N N 239 LYS HG2 H N N 240 LYS HG3 H N N 241 LYS HD2 H N N 242 LYS HD3 H N N 243 LYS HE2 H N N 244 LYS HE3 H N N 245 LYS HZ1 H N N 246 LYS HZ2 H N N 247 LYS HZ3 H N N 248 LYS HXT H N N 249 MET N N N N 250 MET CA C N S 251 MET C C N N 252 MET O O N N 253 MET CB C N N 254 MET CG C N N 255 MET SD S N N 256 MET CE C N N 257 MET OXT O N N 258 MET H H N N 259 MET H2 H N N 260 MET HA H N N 261 MET HB2 H N N 262 MET HB3 H N N 263 MET HG2 H N N 264 MET HG3 H N N 265 MET HE1 H N N 266 MET HE2 H N N 267 MET HE3 H N N 268 MET HXT H N N 269 NAG C1 C N R 270 NAG C2 C N R 271 NAG C3 C N R 272 NAG C4 C N S 273 NAG C5 C N R 274 NAG C6 C N N 275 NAG C7 C N N 276 NAG C8 C N N 277 NAG N2 N N N 278 NAG O1 O N N 279 NAG O3 O N N 280 NAG O4 O N N 281 NAG O5 O N N 282 NAG O6 O N N 283 NAG O7 O N N 284 NAG H1 H N N 285 NAG H2 H N N 286 NAG H3 H N N 287 NAG H4 H N N 288 NAG H5 H N N 289 NAG H61 H N N 290 NAG H62 H N N 291 NAG H81 H N N 292 NAG H82 H N N 293 NAG H83 H N N 294 NAG HN2 H N N 295 NAG HO1 H N N 296 NAG HO3 H N N 297 NAG HO4 H N N 298 NAG HO6 H N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TRP N N N N 371 TRP CA C N S 372 TRP C C N N 373 TRP O O N N 374 TRP CB C N N 375 TRP CG C Y N 376 TRP CD1 C Y N 377 TRP CD2 C Y N 378 TRP NE1 N Y N 379 TRP CE2 C Y N 380 TRP CE3 C Y N 381 TRP CZ2 C Y N 382 TRP CZ3 C Y N 383 TRP CH2 C Y N 384 TRP OXT O N N 385 TRP H H N N 386 TRP H2 H N N 387 TRP HA H N N 388 TRP HB2 H N N 389 TRP HB3 H N N 390 TRP HD1 H N N 391 TRP HE1 H N N 392 TRP HE3 H N N 393 TRP HZ2 H N N 394 TRP HZ3 H N N 395 TRP HH2 H N N 396 TRP HXT H N N 397 TYR N N N N 398 TYR CA C N S 399 TYR C C N N 400 TYR O O N N 401 TYR CB C N N 402 TYR CG C Y N 403 TYR CD1 C Y N 404 TYR CD2 C Y N 405 TYR CE1 C Y N 406 TYR CE2 C Y N 407 TYR CZ C Y N 408 TYR OH O N N 409 TYR OXT O N N 410 TYR H H N N 411 TYR H2 H N N 412 TYR HA H N N 413 TYR HB2 H N N 414 TYR HB3 H N N 415 TYR HD1 H N N 416 TYR HD2 H N N 417 TYR HE1 H N N 418 TYR HE2 H N N 419 TYR HH H N N 420 TYR HXT H N N 421 VAL N N N N 422 VAL CA C N S 423 VAL C C N N 424 VAL O O N N 425 VAL CB C N N 426 VAL CG1 C N N 427 VAL CG2 C N N 428 VAL OXT O N N 429 VAL H H N N 430 VAL H2 H N N 431 VAL HA H N N 432 VAL HB H N N 433 VAL HG11 H N N 434 VAL HG12 H N N 435 VAL HG13 H N N 436 VAL HG21 H N N 437 VAL HG22 H N N 438 VAL HG23 H N N 439 VAL HXT H N N 440 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FUC C1 C2 sing N N 83 FUC C1 O1 sing N N 84 FUC C1 O5 sing N N 85 FUC C1 H1 sing N N 86 FUC C2 C3 sing N N 87 FUC C2 O2 sing N N 88 FUC C2 H2 sing N N 89 FUC C3 C4 sing N N 90 FUC C3 O3 sing N N 91 FUC C3 H3 sing N N 92 FUC C4 C5 sing N N 93 FUC C4 O4 sing N N 94 FUC C4 H4 sing N N 95 FUC C5 C6 sing N N 96 FUC C5 O5 sing N N 97 FUC C5 H5 sing N N 98 FUC C6 H61 sing N N 99 FUC C6 H62 sing N N 100 FUC C6 H63 sing N N 101 FUC O1 HO1 sing N N 102 FUC O2 HO2 sing N N 103 FUC O3 HO3 sing N N 104 FUC O4 HO4 sing N N 105 GLN N CA sing N N 106 GLN N H sing N N 107 GLN N H2 sing N N 108 GLN CA C sing N N 109 GLN CA CB sing N N 110 GLN CA HA sing N N 111 GLN C O doub N N 112 GLN C OXT sing N N 113 GLN CB CG sing N N 114 GLN CB HB2 sing N N 115 GLN CB HB3 sing N N 116 GLN CG CD sing N N 117 GLN CG HG2 sing N N 118 GLN CG HG3 sing N N 119 GLN CD OE1 doub N N 120 GLN CD NE2 sing N N 121 GLN NE2 HE21 sing N N 122 GLN NE2 HE22 sing N N 123 GLN OXT HXT sing N N 124 GLU N CA sing N N 125 GLU N H sing N N 126 GLU N H2 sing N N 127 GLU CA C sing N N 128 GLU CA CB sing N N 129 GLU CA HA sing N N 130 GLU C O doub N N 131 GLU C OXT sing N N 132 GLU CB CG sing N N 133 GLU CB HB2 sing N N 134 GLU CB HB3 sing N N 135 GLU CG CD sing N N 136 GLU CG HG2 sing N N 137 GLU CG HG3 sing N N 138 GLU CD OE1 doub N N 139 GLU CD OE2 sing N N 140 GLU OE2 HE2 sing N N 141 GLU OXT HXT sing N N 142 GLY N CA sing N N 143 GLY N H sing N N 144 GLY N H2 sing N N 145 GLY CA C sing N N 146 GLY CA HA2 sing N N 147 GLY CA HA3 sing N N 148 GLY C O doub N N 149 GLY C OXT sing N N 150 GLY OXT HXT sing N N 151 HIS N CA sing N N 152 HIS N H sing N N 153 HIS N H2 sing N N 154 HIS CA C sing N N 155 HIS CA CB sing N N 156 HIS CA HA sing N N 157 HIS C O doub N N 158 HIS C OXT sing N N 159 HIS CB CG sing N N 160 HIS CB HB2 sing N N 161 HIS CB HB3 sing N N 162 HIS CG ND1 sing Y N 163 HIS CG CD2 doub Y N 164 HIS ND1 CE1 doub Y N 165 HIS ND1 HD1 sing N N 166 HIS CD2 NE2 sing Y N 167 HIS CD2 HD2 sing N N 168 HIS CE1 NE2 sing Y N 169 HIS CE1 HE1 sing N N 170 HIS NE2 HE2 sing N N 171 HIS OXT HXT sing N N 172 ILE N CA sing N N 173 ILE N H sing N N 174 ILE N H2 sing N N 175 ILE CA C sing N N 176 ILE CA CB sing N N 177 ILE CA HA sing N N 178 ILE C O doub N N 179 ILE C OXT sing N N 180 ILE CB CG1 sing N N 181 ILE CB CG2 sing N N 182 ILE CB HB sing N N 183 ILE CG1 CD1 sing N N 184 ILE CG1 HG12 sing N N 185 ILE CG1 HG13 sing N N 186 ILE CG2 HG21 sing N N 187 ILE CG2 HG22 sing N N 188 ILE CG2 HG23 sing N N 189 ILE CD1 HD11 sing N N 190 ILE CD1 HD12 sing N N 191 ILE CD1 HD13 sing N N 192 ILE OXT HXT sing N N 193 LEU N CA sing N N 194 LEU N H sing N N 195 LEU N H2 sing N N 196 LEU CA C sing N N 197 LEU CA CB sing N N 198 LEU CA HA sing N N 199 LEU C O doub N N 200 LEU C OXT sing N N 201 LEU CB CG sing N N 202 LEU CB HB2 sing N N 203 LEU CB HB3 sing N N 204 LEU CG CD1 sing N N 205 LEU CG CD2 sing N N 206 LEU CG HG sing N N 207 LEU CD1 HD11 sing N N 208 LEU CD1 HD12 sing N N 209 LEU CD1 HD13 sing N N 210 LEU CD2 HD21 sing N N 211 LEU CD2 HD22 sing N N 212 LEU CD2 HD23 sing N N 213 LEU OXT HXT sing N N 214 LYS N CA sing N N 215 LYS N H sing N N 216 LYS N H2 sing N N 217 LYS CA C sing N N 218 LYS CA CB sing N N 219 LYS CA HA sing N N 220 LYS C O doub N N 221 LYS C OXT sing N N 222 LYS CB CG sing N N 223 LYS CB HB2 sing N N 224 LYS CB HB3 sing N N 225 LYS CG CD sing N N 226 LYS CG HG2 sing N N 227 LYS CG HG3 sing N N 228 LYS CD CE sing N N 229 LYS CD HD2 sing N N 230 LYS CD HD3 sing N N 231 LYS CE NZ sing N N 232 LYS CE HE2 sing N N 233 LYS CE HE3 sing N N 234 LYS NZ HZ1 sing N N 235 LYS NZ HZ2 sing N N 236 LYS NZ HZ3 sing N N 237 LYS OXT HXT sing N N 238 MET N CA sing N N 239 MET N H sing N N 240 MET N H2 sing N N 241 MET CA C sing N N 242 MET CA CB sing N N 243 MET CA HA sing N N 244 MET C O doub N N 245 MET C OXT sing N N 246 MET CB CG sing N N 247 MET CB HB2 sing N N 248 MET CB HB3 sing N N 249 MET CG SD sing N N 250 MET CG HG2 sing N N 251 MET CG HG3 sing N N 252 MET SD CE sing N N 253 MET CE HE1 sing N N 254 MET CE HE2 sing N N 255 MET CE HE3 sing N N 256 MET OXT HXT sing N N 257 NAG C1 C2 sing N N 258 NAG C1 O1 sing N N 259 NAG C1 O5 sing N N 260 NAG C1 H1 sing N N 261 NAG C2 C3 sing N N 262 NAG C2 N2 sing N N 263 NAG C2 H2 sing N N 264 NAG C3 C4 sing N N 265 NAG C3 O3 sing N N 266 NAG C3 H3 sing N N 267 NAG C4 C5 sing N N 268 NAG C4 O4 sing N N 269 NAG C4 H4 sing N N 270 NAG C5 C6 sing N N 271 NAG C5 O5 sing N N 272 NAG C5 H5 sing N N 273 NAG C6 O6 sing N N 274 NAG C6 H61 sing N N 275 NAG C6 H62 sing N N 276 NAG C7 C8 sing N N 277 NAG C7 N2 sing N N 278 NAG C7 O7 doub N N 279 NAG C8 H81 sing N N 280 NAG C8 H82 sing N N 281 NAG C8 H83 sing N N 282 NAG N2 HN2 sing N N 283 NAG O1 HO1 sing N N 284 NAG O3 HO3 sing N N 285 NAG O4 HO4 sing N N 286 NAG O6 HO6 sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TRP N CA sing N N 357 TRP N H sing N N 358 TRP N H2 sing N N 359 TRP CA C sing N N 360 TRP CA CB sing N N 361 TRP CA HA sing N N 362 TRP C O doub N N 363 TRP C OXT sing N N 364 TRP CB CG sing N N 365 TRP CB HB2 sing N N 366 TRP CB HB3 sing N N 367 TRP CG CD1 doub Y N 368 TRP CG CD2 sing Y N 369 TRP CD1 NE1 sing Y N 370 TRP CD1 HD1 sing N N 371 TRP CD2 CE2 doub Y N 372 TRP CD2 CE3 sing Y N 373 TRP NE1 CE2 sing Y N 374 TRP NE1 HE1 sing N N 375 TRP CE2 CZ2 sing Y N 376 TRP CE3 CZ3 doub Y N 377 TRP CE3 HE3 sing N N 378 TRP CZ2 CH2 doub Y N 379 TRP CZ2 HZ2 sing N N 380 TRP CZ3 CH2 sing Y N 381 TRP CZ3 HZ3 sing N N 382 TRP CH2 HH2 sing N N 383 TRP OXT HXT sing N N 384 TYR N CA sing N N 385 TYR N H sing N N 386 TYR N H2 sing N N 387 TYR CA C sing N N 388 TYR CA CB sing N N 389 TYR CA HA sing N N 390 TYR C O doub N N 391 TYR C OXT sing N N 392 TYR CB CG sing N N 393 TYR CB HB2 sing N N 394 TYR CB HB3 sing N N 395 TYR CG CD1 doub Y N 396 TYR CG CD2 sing Y N 397 TYR CD1 CE1 sing Y N 398 TYR CD1 HD1 sing N N 399 TYR CD2 CE2 doub Y N 400 TYR CD2 HD2 sing N N 401 TYR CE1 CZ doub Y N 402 TYR CE1 HE1 sing N N 403 TYR CE2 CZ sing Y N 404 TYR CE2 HE2 sing N N 405 TYR CZ OH sing N N 406 TYR OH HH sing N N 407 TYR OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 # _em_admin.entry_id 7XCK _em_admin.current_status REL _em_admin.deposition_date 2022-03-24 _em_admin.deposition_site PDBJ _em_admin.last_update 2024-11-06 _em_admin.map_release_date 2022-08-31 _em_admin.title 'Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with S309 fab (local refinement)' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 9606 ? ? 'Homo sapiens' ? ? 3 2 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 HEK293 9606 'Homo sapiens' ? ? 3 2 HEK293 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.39 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Chinese Academy of Sciences' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 FUC 3 n # _atom_sites.entry_id 7XCK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_