data_7XDJ # _entry.id 7XDJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7XDJ pdb_00007xdj 10.2210/pdb7xdj/pdb WWPDB D_1300028598 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7XDJ _pdbx_database_status.recvd_initial_deposition_date 2022-03-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chien, C.M.' 1 ? 'Satange, R.B.' 2 ? 'Hou, M.H.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 8867 _citation.page_last 8881 _citation.title ;Staggered intercalation of DNA duplexes with base-pair modulation by two distinct drug molecules induces asymmetric backbone twisting and structure polymorphism. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac629 _citation.pdbx_database_id_PubMed 35871296 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Satange, R.' 1 0000-0002-5150-9363 primary 'Kao, S.H.' 2 ? primary 'Chien, C.M.' 3 ? primary 'Chou, S.H.' 4 ? primary 'Lin, C.C.' 5 ? primary 'Neidle, S.' 6 0000-0003-0622-6548 primary 'Hou, M.H.' 7 0000-0003-4170-1527 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7XDJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 132.522 _cell.length_a_esd ? _cell.length_b 132.522 _cell.length_b_esd ? _cell.length_c 49.595 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 36 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') ; 2138.423 4 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') ; 2187.294 4 ? ? ? ? 3 polymer nat DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA 809.008 4 ? ? ? ? 4 polymer nat THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA 1259.447 4 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 7 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 8 ? ? ? ? 8 water nat water 18.015 34 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DG)(DC)(DG)(DT)' AGCGCGT A,E,I,M ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DG)(DA)(DG)(DC)(BRU)' ACGAGCU B,F,J,N ? 3 'polypeptide(L)' no yes '(DSN)A(N2C)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV L,P,D,H ? 4 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV C,G,K,O ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DG n 2 6 DC n 2 7 BRU n 3 1 DSN n 3 2 ALA n 3 3 N2C n 3 4 MVA n 3 5 DSN n 3 6 ALA n 3 7 NCY n 3 8 MVA n 4 1 THR n 4 2 DVA n 4 3 PRO n 4 4 SAR n 4 5 MVA n 4 6 PXZ n 4 7 THR n 4 8 DVA n 4 9 PRO n 4 10 SAR n 4 11 MVA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 3 1 sample 1 8 ? Streptomyces 1883 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 1 11 ? Streptomyces 1883 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 7 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7XDJ 7XDJ ? 1 ? 1 2 PDB 7XDJ 7XDJ ? 2 ? 1 3 PDB 7XDJ 7XDJ ? 3 ? 1 4 NOR 7XDJ NOR00228 ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7XDJ A 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 2 2 7XDJ B 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 3 1 7XDJ E 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 4 2 7XDJ F 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 5 1 7XDJ I 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 6 2 7XDJ J 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 7 3 7XDJ L 1 ? 8 ? 7XDJ 1 ? 8 ? 1 8 8 1 7XDJ M 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 9 2 7XDJ N 1 ? 7 ? 7XDJ 1 ? 7 ? 1 7 10 3 7XDJ P 1 ? 8 ? 7XDJ 1 ? 8 ? 1 8 11 4 7XDJ C 1 ? 11 ? 7XDJ 1 ? 11 ? 1 11 12 4 7XDJ G 1 ? 11 ? 7XDJ 1 ? 11 ? 1 11 13 4 7XDJ K 1 ? 11 ? 7XDJ 1 ? 11 ? 1 11 14 4 7XDJ O 1 ? 11 ? 7XDJ 1 ? 11 ? 1 11 15 3 7XDJ D 1 ? 8 ? 7XDJ 1 ? 8 ? 1 8 16 3 7XDJ H 1 ? 8 ? 7XDJ 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 N2C 'L-peptide linking' . N,S-DIMETHYLCYSTEINE ? 'C5 H11 N O2 S' 149.211 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O4' 296.277 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7XDJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.25 mM Oligonucleotide, 0.25 mM Echinomycin, 0.125 mM Actinomycin D, 2.5 mM Sodium cacodylate, 3.5 mM Magnesium chloride, 1 mM Spermine tetrahydrochloride, 6 mM Cobalt chloride, 1% (v/v) 2-Methyl-2,4-pentanediol, 6% (v/v) PEG 200, Reservior PEG 200 (30%) ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-04-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91982 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91982 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7XDJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24192 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.100 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.208 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.088 _reflns.pdbx_Rpim_I_all 0.027 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.440 2.530 ? ? ? ? ? ? 1216 98.100 ? ? ? ? 0.759 ? ? ? ? ? ? ? ? 9.700 ? 1.097 ? ? 0.801 0.252 ? 1 1 0.849 ? ? ? ? ? ? ? ? ? ? 2.530 2.630 ? ? ? ? ? ? 1204 100.000 ? ? ? ? 0.579 ? ? ? ? ? ? ? ? 10.700 ? 1.055 ? ? 0.608 0.185 ? 2 1 0.926 ? ? ? ? ? ? ? ? ? ? 2.630 2.750 ? ? ? ? ? ? 1207 100.000 ? ? ? ? 0.500 ? ? ? ? ? ? ? ? 11.400 ? 1.026 ? ? 0.523 0.155 ? 3 1 0.949 ? ? ? ? ? ? ? ? ? ? 2.750 2.890 ? ? ? ? ? ? 1244 100.000 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 11.600 ? 0.970 ? ? 0.340 0.100 ? 4 1 0.977 ? ? ? ? ? ? ? ? ? ? 2.890 3.070 ? ? ? ? ? ? 1194 100.000 ? ? ? ? 0.193 ? ? ? ? ? ? ? ? 11.400 ? 0.945 ? ? 0.202 0.060 ? 5 1 0.995 ? ? ? ? ? ? ? ? ? ? 3.070 3.310 ? ? ? ? ? ? 1212 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 11.200 ? 0.957 ? ? 0.092 0.028 ? 6 1 0.999 ? ? ? ? ? ? ? ? ? ? 3.310 3.640 ? ? ? ? ? ? 1207 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 11.100 ? 1.182 ? ? 0.074 0.023 ? 7 1 0.999 ? ? ? ? ? ? ? ? ? ? 3.640 4.170 ? ? ? ? ? ? 1218 100.000 ? ? ? ? 0.070 ? ? ? ? ? ? ? ? 11.400 ? 1.286 ? ? 0.073 0.022 ? 8 1 0.998 ? ? ? ? ? ? ? ? ? ? 4.170 5.250 ? ? ? ? ? ? 1210 100.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 11.300 ? 1.568 ? ? 0.063 0.019 ? 9 1 0.998 ? ? ? ? ? ? ? ? ? ? 5.250 30.000 ? ? ? ? ? ? 1205 99.600 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 10.900 ? 2.012 ? ? 0.061 0.019 ? 10 1 0.999 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 130.550 _refine.B_iso_mean 57.2815 _refine.B_iso_min 36.240 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7XDJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.4350 _refine.ls_d_res_low 24.8350 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24192 _refine.ls_number_reflns_R_free 2436 _refine.ls_number_reflns_R_work 21756 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5100 _refine.ls_percent_reflns_R_free 10.0700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2043 _refine.ls_R_factor_R_free 0.2363 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2008 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.970 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7DQ0 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.6900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.4350 _refine_hist.d_res_low 24.8350 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 2224 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 90 _refine_hist.pdbx_B_iso_mean_ligand 55.09 _refine_hist.pdbx_B_iso_mean_solvent 61.10 _refine_hist.pdbx_number_atoms_protein 596 _refine_hist.pdbx_number_atoms_nucleic_acid 1156 _refine_hist.pdbx_number_atoms_ligand 438 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.4354 2.4850 . . 139 1219 94.0000 . . . 0.3327 0.0000 0.2990 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4850 2.5390 . . 145 1268 99.0000 . . . 0.3577 0.0000 0.2854 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5390 2.5980 . . 152 1319 100.0000 . . . 0.3687 0.0000 0.2700 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5980 2.6629 . . 136 1244 100.0000 . . . 0.2879 0.0000 0.2937 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6629 2.7348 . . 142 1292 100.0000 . . . 0.3582 0.0000 0.3137 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7348 2.8152 . . 144 1278 100.0000 . . . 0.4665 0.0000 0.2870 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8152 2.9059 . . 150 1300 100.0000 . . . 0.3123 0.0000 0.2652 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9059 3.0096 . . 140 1298 100.0000 . . . 0.2988 0.0000 0.2416 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0096 3.1299 . . 148 1274 100.0000 . . . 0.2257 0.0000 0.2084 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1299 3.2721 . . 144 1272 100.0000 . . . 0.2112 0.0000 0.1756 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2721 3.4441 . . 138 1266 100.0000 . . . 0.2316 0.0000 0.1559 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4441 3.6593 . . 142 1272 100.0000 . . . 0.2914 0.0000 0.1853 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6593 3.9408 . . 148 1324 100.0000 . . . 0.2423 0.0000 0.2082 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.9408 4.3355 . . 142 1262 100.0000 . . . 0.1931 0.0000 0.1762 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.3355 4.9585 . . 140 1310 100.0000 . . . 0.1916 0.0000 0.1528 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.9585 6.2309 . . 142 1270 100.0000 . . . 0.1629 0.0000 0.1725 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.2309 24.83 . . 144 1288 100.0000 . . . 0.2159 0.0000 0.2186 . . . . . . . . . . . # _struct.entry_id 7XDJ _struct.title 'Crystal structure of actinomycin D-echinomycin-d(AGCGCGT/ACGAGCT) complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7XDJ _struct_keywords.text 'G:A mismatch, Single-strand DNA twist, mismatch binding antibiotic, DNA, DNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 1 ? I N N 2 ? J N N 3 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 3 ? P N N 3 ? Q N N 5 ? R N N 6 ? S N N 5 ? T N N 6 ? U N N 7 ? V N N 7 ? W N N 5 ? X N N 6 ? Y N N 7 ? Z N N 7 ? AA N N 7 ? BA N N 7 ? CA N N 7 ? DA N N 7 ? EA N N 8 ? FA N N 8 ? GA N N 8 ? HA N N 8 ? IA N N 8 ? JA N N 8 ? KA N N 8 ? LA N N 8 ? MA N N 8 ? NA N N 8 ? OA N N 8 ? PA N N 8 ? QA N N 8 ? RA N N 8 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 6 "O3'" ? ? ? 1_555 B BRU 7 P ? ? B DC 6 B BRU 7 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? D DC 6 "O3'" ? ? ? 1_555 D BRU 7 P ? ? F DC 6 F BRU 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale both ? F DC 6 "O3'" ? ? ? 1_555 F BRU 7 P ? ? J DC 6 J BRU 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? G DSN 1 C ? ? ? 1_555 G ALA 2 N ? ? L DSN 1 L ALA 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale one ? G DSN 1 OG ? ? ? 1_555 G MVA 8 C ? ? L DSN 1 L MVA 8 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale6 covale both ? G DSN 1 N ? ? ? 1_555 V QUI . C ? ? L DSN 1 L QUI 102 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale7 covale both ? G ALA 2 C ? ? ? 1_555 G N2C 3 N ? ? L ALA 2 L N2C 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? G N2C 3 C ? ? ? 1_555 G MVA 4 N ? ? L N2C 3 L MVA 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? G N2C 3 CB ? ? ? 1_555 G NCY 7 SG ? ? L N2C 3 L NCY 7 1_555 ? ? ? ? ? ? ? 1.768 ? ? covale10 covale one ? G MVA 4 C ? ? ? 1_555 G DSN 5 OG ? ? L MVA 4 L DSN 5 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale11 covale both ? G DSN 5 C ? ? ? 1_555 G ALA 6 N ? ? L DSN 5 L ALA 6 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? G DSN 5 N ? ? ? 1_555 U QUI . C ? ? L DSN 5 L QUI 101 1_555 ? ? ? ? ? ? ? 1.502 ? ? covale13 covale both ? G ALA 6 C ? ? ? 1_555 G NCY 7 N ? ? L ALA 6 L NCY 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? G NCY 7 C ? ? ? 1_555 G MVA 8 N ? ? L NCY 7 L MVA 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale15 covale both ? I DC 6 "O3'" ? ? ? 1_555 I BRU 7 P ? ? N DC 6 N BRU 7 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale16 covale both ? J DSN 1 C ? ? ? 1_555 J ALA 2 N ? ? P DSN 1 P ALA 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale17 covale one ? J DSN 1 OG ? ? ? 1_555 J MVA 8 C ? ? P DSN 1 P MVA 8 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale18 covale both ? J DSN 1 N ? ? ? 1_555 Z QUI . C ? ? P DSN 1 P QUI 102 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale19 covale both ? J ALA 2 C ? ? ? 1_555 J N2C 3 N ? ? P ALA 2 P N2C 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale20 covale both ? J N2C 3 C ? ? ? 1_555 J MVA 4 N ? ? P N2C 3 P MVA 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? J N2C 3 CB ? ? ? 1_555 J NCY 7 SG ? ? P N2C 3 P NCY 7 1_555 ? ? ? ? ? ? ? 1.781 ? ? covale22 covale one ? J MVA 4 C ? ? ? 1_555 J DSN 5 OG ? ? P MVA 4 P DSN 5 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale23 covale both ? J DSN 5 C ? ? ? 1_555 J ALA 6 N ? ? P DSN 5 P ALA 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale24 covale both ? J DSN 5 N ? ? ? 1_555 Y QUI . C ? ? P DSN 5 P QUI 101 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale25 covale both ? J ALA 6 C ? ? ? 1_555 J NCY 7 N ? ? P ALA 6 P NCY 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale26 covale both ? J NCY 7 C ? ? ? 1_555 J MVA 8 N ? ? P NCY 7 P MVA 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale27 covale both ? K THR 1 C ? ? ? 1_555 K DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale28 covale one ? K THR 1 OG1 ? ? ? 1_555 K MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale29 covale one ? K THR 1 N ? ? ? 1_555 K PXZ 6 C0 ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale30 covale both ? K DVA 2 C ? ? ? 1_555 K PRO 3 N ? ? C DVA 2 C PRO 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale31 covale both ? K PRO 3 C ? ? ? 1_555 K SAR 4 N ? ? C PRO 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale32 covale both ? K SAR 4 C ? ? ? 1_555 K MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale33 covale one ? K PXZ 6 "C0'" ? ? ? 1_555 K THR 7 N ? ? C PXZ 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale34 covale both ? K THR 7 C ? ? ? 1_555 K DVA 8 N ? ? C THR 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale35 covale one ? K THR 7 OG1 ? ? ? 1_555 K MVA 11 C ? ? C THR 7 C MVA 11 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale36 covale both ? K DVA 8 C ? ? ? 1_555 K PRO 9 N ? ? C DVA 8 C PRO 9 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale37 covale both ? K PRO 9 C ? ? ? 1_555 K SAR 10 N ? ? C PRO 9 C SAR 10 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale38 covale both ? K SAR 10 C ? ? ? 1_555 K MVA 11 N ? ? C SAR 10 C MVA 11 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale39 covale both ? L THR 1 C ? ? ? 1_555 L DVA 2 N ? ? G THR 1 G DVA 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale40 covale one ? L THR 1 N ? ? ? 1_555 L PXZ 6 C0 ? ? G THR 1 G PXZ 6 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale41 covale both ? L DVA 2 C ? ? ? 1_555 L PRO 3 N ? ? G DVA 2 G PRO 3 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale42 covale both ? L PRO 3 C ? ? ? 1_555 L SAR 4 N ? ? G PRO 3 G SAR 4 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale43 covale both ? L SAR 4 C ? ? ? 1_555 L MVA 5 N ? ? G SAR 4 G MVA 5 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale44 covale one ? L PXZ 6 "C0'" ? ? ? 1_555 L THR 7 N ? ? G PXZ 6 G THR 7 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale45 covale both ? L THR 7 C ? ? ? 1_555 L DVA 8 N ? ? G THR 7 G DVA 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale46 covale one ? L THR 7 OG1 ? ? ? 1_555 L MVA 11 C ? ? G THR 7 G MVA 11 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale47 covale both ? L DVA 8 C ? ? ? 1_555 L PRO 9 N ? ? G DVA 8 G PRO 9 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale48 covale both ? L PRO 9 C ? ? ? 1_555 L SAR 10 N ? ? G PRO 9 G SAR 10 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale49 covale both ? L SAR 10 C ? ? ? 1_555 L MVA 11 N ? ? G SAR 10 G MVA 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale50 covale both ? M THR 1 C ? ? ? 1_555 M DVA 2 N ? ? K THR 1 K DVA 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale51 covale one ? M THR 1 OG1 ? ? ? 1_555 M MVA 5 C ? ? K THR 1 K MVA 5 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale52 covale one ? M THR 1 N ? ? ? 1_555 M PXZ 6 C0 ? ? K THR 1 K PXZ 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale53 covale both ? M DVA 2 C ? ? ? 1_555 M PRO 3 N ? ? K DVA 2 K PRO 3 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale54 covale both ? M PRO 3 C ? ? ? 1_555 M SAR 4 N ? ? K PRO 3 K SAR 4 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale55 covale both ? M SAR 4 C ? ? ? 1_555 M MVA 5 N ? ? K SAR 4 K MVA 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale56 covale one ? M PXZ 6 "C0'" ? ? ? 1_555 M THR 7 N ? ? K PXZ 6 K THR 7 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale57 covale both ? M THR 7 C ? ? ? 1_555 M DVA 8 N ? ? K THR 7 K DVA 8 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale58 covale one ? M THR 7 OG1 ? ? ? 1_555 M MVA 11 C ? ? K THR 7 K MVA 11 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale59 covale both ? M DVA 8 C ? ? ? 1_555 M PRO 9 N ? ? K DVA 8 K PRO 9 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale60 covale both ? M PRO 9 C ? ? ? 1_555 M SAR 10 N ? ? K PRO 9 K SAR 10 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale61 covale both ? M SAR 10 C ? ? ? 1_555 M MVA 11 N ? ? K SAR 10 K MVA 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale62 covale both ? N THR 1 C ? ? ? 1_555 N DVA 2 N ? ? O THR 1 O DVA 2 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale63 covale one ? N THR 1 OG1 ? ? ? 1_555 N MVA 5 C ? ? O THR 1 O MVA 5 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale64 covale one ? N THR 1 N ? ? ? 1_555 N PXZ 6 C0 ? ? O THR 1 O PXZ 6 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale65 covale both ? N DVA 2 C ? ? ? 1_555 N PRO 3 N ? ? O DVA 2 O PRO 3 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale66 covale both ? N PRO 3 C ? ? ? 1_555 N SAR 4 N ? ? O PRO 3 O SAR 4 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale67 covale both ? N SAR 4 C ? ? ? 1_555 N MVA 5 N ? ? O SAR 4 O MVA 5 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale68 covale one ? N PXZ 6 "C0'" ? ? ? 1_555 N THR 7 N ? ? O PXZ 6 O THR 7 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale69 covale both ? N THR 7 C ? ? ? 1_555 N DVA 8 N ? ? O THR 7 O DVA 8 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale70 covale one ? N THR 7 OG1 ? ? ? 1_555 N MVA 11 C ? ? O THR 7 O MVA 11 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale71 covale both ? N DVA 8 C ? ? ? 1_555 N PRO 9 N ? ? O DVA 8 O PRO 9 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale72 covale both ? N PRO 9 C ? ? ? 1_555 N SAR 10 N ? ? O PRO 9 O SAR 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale73 covale both ? N SAR 10 C ? ? ? 1_555 N MVA 11 N ? ? O SAR 10 O MVA 11 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale74 covale both ? O DSN 1 C ? ? ? 1_555 O ALA 2 N ? ? D DSN 1 D ALA 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale75 covale one ? O DSN 1 OG ? ? ? 1_555 O MVA 8 C ? ? D DSN 1 D MVA 8 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale76 covale both ? O ALA 2 C ? ? ? 1_555 O N2C 3 N ? ? D ALA 2 D N2C 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale77 covale both ? O N2C 3 C ? ? ? 1_555 O MVA 4 N ? ? D N2C 3 D MVA 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale78 covale both ? O N2C 3 CB ? ? ? 1_555 O NCY 7 SG ? ? D N2C 3 D NCY 7 1_555 ? ? ? ? ? ? ? 1.764 ? ? covale79 covale one ? O MVA 4 C ? ? ? 1_555 O DSN 5 OG ? ? D MVA 4 D DSN 5 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale80 covale both ? O DSN 5 C ? ? ? 1_555 O ALA 6 N ? ? D DSN 5 D ALA 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale81 covale both ? O DSN 5 N ? ? ? 1_555 BA QUI . C ? ? D DSN 5 D QUI 102 1_555 ? ? ? ? ? ? ? 1.568 ? ? covale82 covale both ? O ALA 6 C ? ? ? 1_555 O NCY 7 N ? ? D ALA 6 D NCY 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale83 covale both ? O NCY 7 C ? ? ? 1_555 O MVA 8 N ? ? D NCY 7 D MVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale84 covale both ? P DSN 1 C ? ? ? 1_555 P ALA 2 N ? ? H DSN 1 H ALA 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale85 covale one ? P DSN 1 OG ? ? ? 1_555 P MVA 8 C ? ? H DSN 1 H MVA 8 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale86 covale both ? P DSN 1 N ? ? ? 1_555 CA QUI . C ? ? H DSN 1 H QUI 101 1_555 ? ? ? ? ? ? ? 1.576 ? ? covale87 covale both ? P ALA 2 C ? ? ? 1_555 P N2C 3 N ? ? H ALA 2 H N2C 3 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale88 covale both ? P N2C 3 C ? ? ? 1_555 P MVA 4 N ? ? H N2C 3 H MVA 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale89 covale both ? P N2C 3 CB ? ? ? 1_555 P NCY 7 SG ? ? H N2C 3 H NCY 7 1_555 ? ? ? ? ? ? ? 1.776 ? ? covale90 covale one ? P MVA 4 C ? ? ? 1_555 P DSN 5 OG ? ? H MVA 4 H DSN 5 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale91 covale both ? P DSN 5 C ? ? ? 1_555 P ALA 6 N ? ? H DSN 5 H ALA 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale92 covale both ? P DSN 5 N ? ? ? 1_555 DA QUI . C ? ? H DSN 5 H QUI 102 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale93 covale both ? P ALA 6 C ? ? ? 1_555 P NCY 7 N ? ? H ALA 6 H NCY 7 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale94 covale both ? P NCY 7 C ? ? ? 1_555 P MVA 8 N ? ? H NCY 7 H MVA 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? metalc1 metalc ? ? A DC 3 OP1 ? ? ? 1_555 R MG . MG ? ? A DC 3 A MG 102 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc2 metalc ? ? R MG . MG ? ? ? 1_555 EA HOH . O ? ? A MG 102 A HOH 202 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc3 metalc ? ? R MG . MG ? ? ? 1_555 C DC 3 OP1 ? ? A MG 102 E DC 3 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc4 metalc ? ? R MG . MG ? ? ? 1_555 GA HOH . O ? ? A MG 102 E HOH 103 1_555 ? ? ? ? ? ? ? 2.848 ? ? metalc5 metalc ? ? F DC 2 OP2 ? ? ? 1_555 T MG . MG ? ? J DC 2 J MG 102 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc6 metalc ? ? I DA 1 "O3'" ? ? ? 1_555 X MG . MG ? ? N DA 1 N MG 102 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc7 metalc ? ? I DC 2 OP2 ? ? ? 1_555 X MG . MG ? ? N DC 2 N MG 102 1_555 ? ? ? ? ? ? ? 2.903 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B BRU 7 N3 ? ? A DA 1 B BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B BRU 7 O4 ? ? A DA 1 B BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DA 4 N6 ? ? A DG 4 B DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D BRU 7 N3 ? ? E DA 1 F BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D BRU 7 O4 ? ? E DA 1 F BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 6 N3 ? ? E DG 2 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 6 O2 ? ? E DG 2 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 6 N4 ? ? E DG 2 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 5 N1 ? ? E DC 3 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 5 O6 ? ? E DC 3 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 5 N2 ? ? E DC 3 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DA 4 N6 ? ? E DG 4 F DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog27 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 3 N1 ? ? E DC 5 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 3 O6 ? ? E DC 5 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 3 N2 ? ? E DC 5 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 2 N3 ? ? E DG 6 F DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 2 O2 ? ? E DG 6 F DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 2 N4 ? ? E DG 6 F DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 1 N1 ? ? E DT 7 F DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 1 N6 ? ? E DT 7 F DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DA 1 N1 ? ? ? 1_555 F BRU 7 N3 ? ? I DA 1 J BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F BRU 7 O4 ? ? I DA 1 J BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 6 N3 ? ? I DG 2 J DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 6 O2 ? ? I DG 2 J DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 6 N4 ? ? I DG 2 J DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 5 N1 ? ? I DC 3 J DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 5 O6 ? ? I DC 3 J DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 5 N2 ? ? I DC 3 J DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DG 4 N3 ? ? ? 1_555 F DA 4 N6 ? ? I DG 4 J DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog44 hydrog ? ? E DC 5 N3 ? ? ? 1_555 F DG 3 N1 ? ? I DC 5 J DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DC 5 N4 ? ? ? 1_555 F DG 3 O6 ? ? I DC 5 J DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DC 5 O2 ? ? ? 1_555 F DG 3 N2 ? ? I DC 5 J DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 2 N3 ? ? I DG 6 J DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 2 O2 ? ? I DG 6 J DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 2 N4 ? ? I DG 6 J DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 1 N1 ? ? I DT 7 J DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 1 N6 ? ? I DT 7 J DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? H DA 1 N1 ? ? ? 1_555 I BRU 7 N3 ? ? M DA 1 N BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? H DA 1 N6 ? ? ? 1_555 I BRU 7 O4 ? ? M DA 1 N BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? H DG 2 N1 ? ? ? 1_555 I DC 6 N3 ? ? M DG 2 N DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? H DG 2 N2 ? ? ? 1_555 I DC 6 O2 ? ? M DG 2 N DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? H DG 2 O6 ? ? ? 1_555 I DC 6 N4 ? ? M DG 2 N DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? H DC 3 N3 ? ? ? 1_555 I DG 5 N1 ? ? M DC 3 N DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? H DC 3 N4 ? ? ? 1_555 I DG 5 O6 ? ? M DC 3 N DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? H DC 3 O2 ? ? ? 1_555 I DG 5 N2 ? ? M DC 3 N DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? H DG 4 N3 ? ? ? 1_555 I DA 4 N6 ? ? M DG 4 N DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog61 hydrog ? ? H DC 5 N3 ? ? ? 1_555 I DG 3 N1 ? ? M DC 5 N DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? H DC 5 N4 ? ? ? 1_555 I DG 3 O6 ? ? M DC 5 N DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? H DC 5 O2 ? ? ? 1_555 I DG 3 N2 ? ? M DC 5 N DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? H DG 6 N1 ? ? ? 1_555 I DC 2 N3 ? ? M DG 6 N DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? H DG 6 N2 ? ? ? 1_555 I DC 2 O2 ? ? M DG 6 N DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? H DG 6 O6 ? ? ? 1_555 I DC 2 N4 ? ? M DG 6 N DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? H DT 7 N3 ? ? ? 1_555 I DA 1 N1 ? ? M DT 7 N DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? H DT 7 O4 ? ? ? 1_555 I DA 1 N6 ? ? M DT 7 N DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 3 K . ? PRO 3 C SAR 4 K ? SAR 4 C 1 8.93 2 PRO 9 K . ? PRO 9 C SAR 10 K ? SAR 10 C 1 1.55 3 PRO 3 L . ? PRO 3 G SAR 4 L ? SAR 4 G 1 9.59 4 PRO 9 L . ? PRO 9 G SAR 10 L ? SAR 10 G 1 2.32 5 PRO 3 M . ? PRO 3 K SAR 4 M ? SAR 4 K 1 16.28 6 PRO 9 M . ? PRO 9 K SAR 10 M ? SAR 10 K 1 2.45 7 PRO 3 N . ? PRO 3 O SAR 4 N ? SAR 4 O 1 7.43 8 PRO 9 N . ? PRO 9 O SAR 10 N ? SAR 10 O 1 1.42 # _atom_sites.entry_id 7XDJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007546 _atom_sites.fract_transf_matrix[1][2] 0.004357 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008713 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020163 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BR C CL MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 BRU 7 7 7 BRU BRU B . n C 1 1 DA 1 1 1 DA DA E . n C 1 2 DG 2 2 2 DG DG E . n C 1 3 DC 3 3 3 DC DC E . n C 1 4 DG 4 4 4 DG DG E . n C 1 5 DC 5 5 5 DC DC E . n C 1 6 DG 6 6 6 DG DG E . n C 1 7 DT 7 7 7 DT DT E . n D 2 1 DA 1 1 1 DA DA F . n D 2 2 DC 2 2 2 DC DC F . n D 2 3 DG 3 3 3 DG DG F . n D 2 4 DA 4 4 4 DA DA F . n D 2 5 DG 5 5 5 DG DG F . n D 2 6 DC 6 6 6 DC DC F . n D 2 7 BRU 7 7 7 BRU BRU F . n E 1 1 DA 1 1 1 DA DA I . n E 1 2 DG 2 2 2 DG DG I . n E 1 3 DC 3 3 3 DC DC I . n E 1 4 DG 4 4 4 DG DG I . n E 1 5 DC 5 5 5 DC DC I . n E 1 6 DG 6 6 6 DG DG I . n E 1 7 DT 7 7 7 DT DT I . n F 2 1 DA 1 1 1 DA DA J . n F 2 2 DC 2 2 2 DC DC J . n F 2 3 DG 3 3 3 DG DG J . n F 2 4 DA 4 4 4 DA DA J . n F 2 5 DG 5 5 5 DG DG J . n F 2 6 DC 6 6 6 DC DC J . n F 2 7 BRU 7 7 7 BRU BRU J . n G 3 1 DSN 1 1 1 DSN DSN L . n G 3 2 ALA 2 2 2 ALA ALA L . n G 3 3 N2C 3 3 3 N2C N2C L . n G 3 4 MVA 4 4 4 MVA MVA L . n G 3 5 DSN 5 5 5 DSN DSN L . n G 3 6 ALA 6 6 6 ALA ALA L . n G 3 7 NCY 7 7 7 NCY NCY L . n G 3 8 MVA 8 8 8 MVA MVA L . n H 1 1 DA 1 1 1 DA DA M . n H 1 2 DG 2 2 2 DG DG M . n H 1 3 DC 3 3 3 DC DC M . n H 1 4 DG 4 4 4 DG DG M . n H 1 5 DC 5 5 5 DC DC M . n H 1 6 DG 6 6 6 DG DG M . n H 1 7 DT 7 7 7 DT DT M . n I 2 1 DA 1 1 1 DA DA N . n I 2 2 DC 2 2 2 DC DC N . n I 2 3 DG 3 3 3 DG DG N . n I 2 4 DA 4 4 4 DA DA N . n I 2 5 DG 5 5 5 DG DG N . n I 2 6 DC 6 6 6 DC DC N . n I 2 7 BRU 7 7 7 BRU BRU N . n J 3 1 DSN 1 1 1 DSN DSN P . n J 3 2 ALA 2 2 2 ALA ALA P . n J 3 3 N2C 3 3 3 N2C N2C P . n J 3 4 MVA 4 4 4 MVA MVA P . n J 3 5 DSN 5 5 5 DSN DSN P . n J 3 6 ALA 6 6 6 ALA ALA P . n J 3 7 NCY 7 7 7 NCY NCY P . n J 3 8 MVA 8 8 8 MVA MVA P . n K 4 1 THR 1 1 1 THR THR C . n K 4 2 DVA 2 2 2 DVA DVA C . n K 4 3 PRO 3 3 3 PRO PRO C . n K 4 4 SAR 4 4 4 SAR SAR C . n K 4 5 MVA 5 5 5 MVA MVA C . n K 4 6 PXZ 6 6 6 PXZ PXZ C . n K 4 7 THR 7 7 7 THR THR C . n K 4 8 DVA 8 8 8 DVA DVA C . n K 4 9 PRO 9 9 9 PRO PRO C . n K 4 10 SAR 10 10 10 SAR SAR C . n K 4 11 MVA 11 11 11 MVA MVA C . n L 4 1 THR 1 1 1 THR THR G . n L 4 2 DVA 2 2 2 DVA DVA G . n L 4 3 PRO 3 3 3 PRO PRO G . n L 4 4 SAR 4 4 4 SAR SAR G . n L 4 5 MVA 5 5 5 MVA MVA G . n L 4 6 PXZ 6 6 6 PXZ PXZ G . n L 4 7 THR 7 7 7 THR THR G . n L 4 8 DVA 8 8 8 DVA DVA G . n L 4 9 PRO 9 9 9 PRO PRO G . n L 4 10 SAR 10 10 10 SAR SAR G . n L 4 11 MVA 11 11 11 MVA MVA G . n M 4 1 THR 1 1 1 THR THR K . n M 4 2 DVA 2 2 2 DVA DVA K . n M 4 3 PRO 3 3 3 PRO PRO K . n M 4 4 SAR 4 4 4 SAR SAR K . n M 4 5 MVA 5 5 5 MVA MVA K . n M 4 6 PXZ 6 6 6 PXZ PXZ K . n M 4 7 THR 7 7 7 THR THR K . n M 4 8 DVA 8 8 8 DVA DVA K . n M 4 9 PRO 9 9 9 PRO PRO K . n M 4 10 SAR 10 10 10 SAR SAR K . n M 4 11 MVA 11 11 11 MVA MVA K . n N 4 1 THR 1 1 1 THR THR O . n N 4 2 DVA 2 2 2 DVA DVA O . n N 4 3 PRO 3 3 3 PRO PRO O . n N 4 4 SAR 4 4 4 SAR SAR O . n N 4 5 MVA 5 5 5 MVA MVA O . n N 4 6 PXZ 6 6 6 PXZ PXZ O . n N 4 7 THR 7 7 7 THR THR O . n N 4 8 DVA 8 8 8 DVA DVA O . n N 4 9 PRO 9 9 9 PRO PRO O . n N 4 10 SAR 10 10 10 SAR SAR O . n N 4 11 MVA 11 11 11 MVA MVA O . n O 3 1 DSN 1 1 1 DSN DSN D . n O 3 2 ALA 2 2 2 ALA ALA D . n O 3 3 N2C 3 3 3 N2C N2C D . n O 3 4 MVA 4 4 4 MVA MVA D . n O 3 5 DSN 5 5 5 DSN DSN D . n O 3 6 ALA 6 6 6 ALA ALA D . n O 3 7 NCY 7 7 7 NCY NCY D . n O 3 8 MVA 8 8 8 MVA MVA D . n P 3 1 DSN 1 1 1 DSN DSN H . n P 3 2 ALA 2 2 2 ALA ALA H . n P 3 3 N2C 3 3 3 N2C N2C H . n P 3 4 MVA 4 4 4 MVA MVA H . n P 3 5 DSN 5 5 5 DSN DSN H . n P 3 6 ALA 6 6 6 ALA ALA H . n P 3 7 NCY 7 7 7 NCY NCY H . n P 3 8 MVA 8 8 8 MVA MVA H . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email mhho@nchu.edu.tw _pdbx_contact_author.name_first Ming-Hon _pdbx_contact_author.name_last Hou _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4170-1527 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code Q 5 CL 1 101 7 CL CL A . R 6 MG 1 102 1 MG MG A . S 5 CL 1 101 6 CL CL J . T 6 MG 1 102 3 MG MG J . U 7 QUI 1 101 9 QUI QUI L . V 7 QUI 1 102 0 QUI QUI L . W 5 CL 1 101 3 CL CL N . X 6 MG 1 102 2 MG MG N . Y 7 QUI 1 101 9 QUI QUI P . Z 7 QUI 1 102 0 QUI QUI P . AA 7 QUI 1 101 101 QUI QUI D . BA 7 QUI 1 102 102 QUI QUI D . CA 7 QUI 1 101 101 QUI QUI H . DA 7 QUI 1 102 102 QUI QUI H . EA 8 HOH 1 201 63 HOH HOH A . EA 8 HOH 2 202 96 HOH HOH A . EA 8 HOH 3 203 115 HOH HOH A . EA 8 HOH 4 204 99 HOH HOH A . FA 8 HOH 1 101 116 HOH HOH B . FA 8 HOH 2 102 25 HOH HOH B . FA 8 HOH 3 103 66 HOH HOH B . FA 8 HOH 4 104 74 HOH HOH B . GA 8 HOH 1 101 50 HOH HOH E . GA 8 HOH 2 102 40 HOH HOH E . GA 8 HOH 3 103 94 HOH HOH E . HA 8 HOH 1 101 65 HOH HOH F . HA 8 HOH 2 102 117 HOH HOH F . HA 8 HOH 3 103 8 HOH HOH F . HA 8 HOH 4 104 69 HOH HOH F . IA 8 HOH 1 101 81 HOH HOH I . IA 8 HOH 2 102 17 HOH HOH I . IA 8 HOH 3 103 114 HOH HOH I . IA 8 HOH 4 104 34 HOH HOH I . JA 8 HOH 1 201 84 HOH HOH J . KA 8 HOH 1 201 6 HOH HOH L . KA 8 HOH 2 202 82 HOH HOH L . KA 8 HOH 3 203 113 HOH HOH L . LA 8 HOH 1 101 118 HOH HOH M . LA 8 HOH 2 102 92 HOH HOH M . LA 8 HOH 3 103 12 HOH HOH M . LA 8 HOH 4 104 107 HOH HOH M . MA 8 HOH 1 201 9 HOH HOH N . NA 8 HOH 1 101 75 HOH HOH C . OA 8 HOH 1 101 105 HOH HOH G . PA 8 HOH 1 101 119 HOH HOH K . QA 8 HOH 1 201 70 HOH HOH D . RA 8 HOH 1 201 7 HOH HOH H . RA 8 HOH 2 202 22 HOH HOH H . # loop_ _pdbx_molecule_features.prd_id _pdbx_molecule_features.name _pdbx_molecule_features.type _pdbx_molecule_features.class _pdbx_molecule_features.details PRD_000001 'Actinomycin D' Polypeptide Antibiotic ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; PRD_000491 Echinomycin 'Cyclic depsipeptide' Antibiotic ;ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000491 G 1 PRD_000491 V 2 PRD_000491 J 2 PRD_000491 Z 3 PRD_000001 M 4 PRD_000001 N # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 3 author_defined_assembly ? tetrameric 4 4 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,J,K,Q,R,Y,Z,EA,FA,NA 2 1 C,D,L,O,AA,BA,GA,HA,OA,QA 3 1 E,F,G,N,S,T,U,V,IA,JA,KA 4 1 H,I,M,P,W,X,CA,DA,LA,MA,PA,RA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 3 ? A DC 3 ? 1_555 MG ? R MG . ? A MG 102 ? 1_555 O ? EA HOH . ? A HOH 202 ? 1_555 91.5 ? 2 OP1 ? A DC 3 ? A DC 3 ? 1_555 MG ? R MG . ? A MG 102 ? 1_555 OP1 ? C DC 3 ? E DC 3 ? 1_555 176.0 ? 3 O ? EA HOH . ? A HOH 202 ? 1_555 MG ? R MG . ? A MG 102 ? 1_555 OP1 ? C DC 3 ? E DC 3 ? 1_555 92.4 ? 4 OP1 ? A DC 3 ? A DC 3 ? 1_555 MG ? R MG . ? A MG 102 ? 1_555 O ? GA HOH . ? E HOH 103 ? 1_555 97.5 ? 5 O ? EA HOH . ? A HOH 202 ? 1_555 MG ? R MG . ? A MG 102 ? 1_555 O ? GA HOH . ? E HOH 103 ? 1_555 110.8 ? 6 OP1 ? C DC 3 ? E DC 3 ? 1_555 MG ? R MG . ? A MG 102 ? 1_555 O ? GA HOH . ? E HOH 103 ? 1_555 80.7 ? 7 "O3'" ? I DA 1 ? N DA 1 ? 1_555 MG ? X MG . ? N MG 102 ? 1_555 OP2 ? I DC 2 ? N DC 2 ? 1_555 52.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-12-14 2 'Structure model' 2 0 2023-11-15 3 'Structure model' 2 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp_atom 4 2 'Structure model' chem_comp_bond 5 2 'Structure model' pdbx_validate_close_contact 6 2 'Structure model' struct_conn 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_atom_id' 2 2 'Structure model' '_atom_site.label_atom_id' 3 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 4 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 5 2 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 6 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 5.3782 _pdbx_refine_tls.origin_y 25.8104 _pdbx_refine_tls.origin_z 11.6789 _pdbx_refine_tls.T[1][1] 0.3694 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0356 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0829 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3021 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0016 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.6560 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.8136 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.7040 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.5747 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.6557 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 1.1958 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.9811 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0912 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.1241 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0830 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.2876 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.1501 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0745 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0812 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.1211 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0897 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 5 # _pdbx_entry_details.entry_id 7XDJ _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ;THE ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, ECHINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) QUI. ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 G THR 1 ? ? O G MVA 5 ? ? 1.42 2 1 OG1 G THR 7 ? ? O G MVA 11 ? ? 1.57 3 1 OG1 C THR 1 ? ? O C MVA 5 ? ? 1.61 4 1 N D DSN 1 ? ? C D QUI 101 ? ? 1.65 5 1 OG1 K THR 1 ? ? O K MVA 5 ? ? 1.87 6 1 OG1 C THR 7 ? ? O C MVA 11 ? ? 1.91 7 1 OG D DSN 1 ? ? O D MVA 8 ? ? 1.93 8 1 OG H DSN 1 ? ? O H MVA 8 ? ? 1.99 9 1 OG P DSN 1 ? ? O P MVA 8 ? ? 2.03 10 1 OG1 O THR 7 ? ? O O MVA 11 ? ? 2.04 11 1 N K THR 1 ? ? O1 K PXZ 6 ? ? 2.10 12 1 CA D DSN 5 ? ? C D QUI 102 ? ? 2.15 13 1 OG1 K THR 7 ? ? O K MVA 11 ? ? 2.16 14 1 CA H DSN 1 ? ? C H QUI 101 ? ? 2.19 15 1 OG1 O THR 1 ? ? O O MVA 5 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DA 1 ? ? "C3'" A DA 1 ? ? 1.372 1.419 -0.047 0.006 N 2 1 C L DSN 1 ? ? O L DSN 1 ? ? 1.409 1.229 0.180 0.019 N 3 1 C L DSN 5 ? ? O L DSN 5 ? ? 1.392 1.229 0.163 0.019 N 4 1 C P DSN 1 ? ? O P DSN 1 ? ? 1.392 1.229 0.163 0.019 N 5 1 C P DSN 5 ? ? O P DSN 5 ? ? 1.401 1.229 0.172 0.019 N 6 1 C D DSN 1 ? ? O D DSN 1 ? ? 1.389 1.229 0.160 0.019 N 7 1 C D DSN 5 ? ? O D DSN 5 ? ? 1.398 1.229 0.169 0.019 N 8 1 C H DSN 1 ? ? O H DSN 1 ? ? 1.393 1.229 0.164 0.019 N 9 1 C H DSN 5 ? ? O H DSN 5 ? ? 1.404 1.229 0.175 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C C DVA 8 ? ? N C PRO 9 ? ? CA C PRO 9 ? ? 135.46 119.30 16.16 1.50 Y 2 1 C C DVA 8 ? ? N C PRO 9 ? ? CD C PRO 9 ? ? 100.03 128.40 -28.37 2.10 Y 3 1 C O DVA 8 ? ? N O PRO 9 ? ? CA O PRO 9 ? ? 129.67 119.30 10.37 1.50 Y 4 1 C O DVA 8 ? ? N O PRO 9 ? ? CD O PRO 9 ? ? 106.54 128.40 -21.86 2.10 Y # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 DVA C 2 ? ? PRO C 3 ? ? 111.55 2 1 DVA C 8 ? ? PRO C 9 ? ? 101.99 3 1 DVA G 2 ? ? PRO G 3 ? ? 110.19 4 1 DVA G 8 ? ? PRO G 9 ? ? 89.63 5 1 DVA K 2 ? ? PRO K 3 ? ? 116.53 6 1 DVA K 8 ? ? PRO K 9 ? ? 98.57 7 1 DVA O 2 ? ? PRO O 3 ? ? 130.07 8 1 DVA O 8 ? ? PRO O 9 ? ? 92.49 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id L _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 203 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.35 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id D _pdbx_unobs_or_zero_occ_atoms.auth_comp_id QUI _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 101 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id AA _pdbx_unobs_or_zero_occ_atoms.label_comp_id QUI _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 BRU N1 N N N 14 BRU C2 C N N 15 BRU N3 N N N 16 BRU C4 C N N 17 BRU C5 C N N 18 BRU C6 C N N 19 BRU O2 O N N 20 BRU O4 O N N 21 BRU BR BR N N 22 BRU "C1'" C N R 23 BRU "C2'" C N N 24 BRU "C3'" C N S 25 BRU "C4'" C N R 26 BRU "O3'" O N N 27 BRU "O4'" O N N 28 BRU "C5'" C N N 29 BRU "O5'" O N N 30 BRU P P N N 31 BRU OP1 O N N 32 BRU OP2 O N N 33 BRU OP3 O N N 34 BRU HN3 H N N 35 BRU H6 H N N 36 BRU "H1'" H N N 37 BRU "H2'" H N N 38 BRU "H2''" H N N 39 BRU "H3'" H N N 40 BRU "H4'" H N N 41 BRU "HO3'" H N N 42 BRU "H5'" H N N 43 BRU "H5''" H N N 44 BRU HOP2 H N N 45 BRU HOP3 H N N 46 CL CL CL N N 47 DA OP3 O N N 48 DA P P N N 49 DA OP1 O N N 50 DA OP2 O N N 51 DA "O5'" O N N 52 DA "C5'" C N N 53 DA "C4'" C N R 54 DA "O4'" O N N 55 DA "C3'" C N S 56 DA "O3'" O N N 57 DA "C2'" C N N 58 DA "C1'" C N R 59 DA N9 N Y N 60 DA C8 C Y N 61 DA N7 N Y N 62 DA C5 C Y N 63 DA C6 C Y N 64 DA N6 N N N 65 DA N1 N Y N 66 DA C2 C Y N 67 DA N3 N Y N 68 DA C4 C Y N 69 DA HOP3 H N N 70 DA HOP2 H N N 71 DA "H5'" H N N 72 DA "H5''" H N N 73 DA "H4'" H N N 74 DA "H3'" H N N 75 DA "HO3'" H N N 76 DA "H2'" H N N 77 DA "H2''" H N N 78 DA "H1'" H N N 79 DA H8 H N N 80 DA H61 H N N 81 DA H62 H N N 82 DA H2 H N N 83 DC OP3 O N N 84 DC P P N N 85 DC OP1 O N N 86 DC OP2 O N N 87 DC "O5'" O N N 88 DC "C5'" C N N 89 DC "C4'" C N R 90 DC "O4'" O N N 91 DC "C3'" C N S 92 DC "O3'" O N N 93 DC "C2'" C N N 94 DC "C1'" C N R 95 DC N1 N N N 96 DC C2 C N N 97 DC O2 O N N 98 DC N3 N N N 99 DC C4 C N N 100 DC N4 N N N 101 DC C5 C N N 102 DC C6 C N N 103 DC HOP3 H N N 104 DC HOP2 H N N 105 DC "H5'" H N N 106 DC "H5''" H N N 107 DC "H4'" H N N 108 DC "H3'" H N N 109 DC "HO3'" H N N 110 DC "H2'" H N N 111 DC "H2''" H N N 112 DC "H1'" H N N 113 DC H41 H N N 114 DC H42 H N N 115 DC H5 H N N 116 DC H6 H N N 117 DG OP3 O N N 118 DG P P N N 119 DG OP1 O N N 120 DG OP2 O N N 121 DG "O5'" O N N 122 DG "C5'" C N N 123 DG "C4'" C N R 124 DG "O4'" O N N 125 DG "C3'" C N S 126 DG "O3'" O N N 127 DG "C2'" C N N 128 DG "C1'" C N R 129 DG N9 N Y N 130 DG C8 C Y N 131 DG N7 N Y N 132 DG C5 C Y N 133 DG C6 C N N 134 DG O6 O N N 135 DG N1 N N N 136 DG C2 C N N 137 DG N2 N N N 138 DG N3 N N N 139 DG C4 C Y N 140 DG HOP3 H N N 141 DG HOP2 H N N 142 DG "H5'" H N N 143 DG "H5''" H N N 144 DG "H4'" H N N 145 DG "H3'" H N N 146 DG "HO3'" H N N 147 DG "H2'" H N N 148 DG "H2''" H N N 149 DG "H1'" H N N 150 DG H8 H N N 151 DG H1 H N N 152 DG H21 H N N 153 DG H22 H N N 154 DSN N N N N 155 DSN CA C N R 156 DSN C C N N 157 DSN O O N N 158 DSN OXT O N N 159 DSN CB C N N 160 DSN OG O N N 161 DSN H H N N 162 DSN H2 H N N 163 DSN HA H N N 164 DSN HXT H N N 165 DSN HB2 H N N 166 DSN HB3 H N N 167 DSN HG H N N 168 DT OP3 O N N 169 DT P P N N 170 DT OP1 O N N 171 DT OP2 O N N 172 DT "O5'" O N N 173 DT "C5'" C N N 174 DT "C4'" C N R 175 DT "O4'" O N N 176 DT "C3'" C N S 177 DT "O3'" O N N 178 DT "C2'" C N N 179 DT "C1'" C N R 180 DT N1 N N N 181 DT C2 C N N 182 DT O2 O N N 183 DT N3 N N N 184 DT C4 C N N 185 DT O4 O N N 186 DT C5 C N N 187 DT C7 C N N 188 DT C6 C N N 189 DT HOP3 H N N 190 DT HOP2 H N N 191 DT "H5'" H N N 192 DT "H5''" H N N 193 DT "H4'" H N N 194 DT "H3'" H N N 195 DT "HO3'" H N N 196 DT "H2'" H N N 197 DT "H2''" H N N 198 DT "H1'" H N N 199 DT H3 H N N 200 DT H71 H N N 201 DT H72 H N N 202 DT H73 H N N 203 DT H6 H N N 204 DVA N N N N 205 DVA CA C N R 206 DVA CB C N N 207 DVA CG1 C N N 208 DVA CG2 C N N 209 DVA C C N N 210 DVA O O N N 211 DVA OXT O N N 212 DVA H H N N 213 DVA H2 H N N 214 DVA HA H N N 215 DVA HB H N N 216 DVA HG11 H N N 217 DVA HG12 H N N 218 DVA HG13 H N N 219 DVA HG21 H N N 220 DVA HG22 H N N 221 DVA HG23 H N N 222 DVA HXT H N N 223 HOH O O N N 224 HOH H1 H N N 225 HOH H2 H N N 226 MG MG MG N N 227 MVA N N N N 228 MVA CN C N N 229 MVA CA C N S 230 MVA CB C N N 231 MVA CG1 C N N 232 MVA CG2 C N N 233 MVA C C N N 234 MVA O O N N 235 MVA OXT O N N 236 MVA H H N N 237 MVA HN1 H N N 238 MVA HN2 H N N 239 MVA HN3 H N N 240 MVA HA H N N 241 MVA HB H N N 242 MVA HG11 H N N 243 MVA HG12 H N N 244 MVA HG13 H N N 245 MVA HG21 H N N 246 MVA HG22 H N N 247 MVA HG23 H N N 248 MVA HXT H N N 249 N2C N N N N 250 N2C CA C N R 251 N2C CB C N N 252 N2C SG S N N 253 N2C CD C N N 254 N2C CN C N N 255 N2C C C N N 256 N2C O O N N 257 N2C OXT O N N 258 N2C H H N N 259 N2C HA H N N 260 N2C HB2 H N N 261 N2C HB3 H N N 262 N2C HD1 H N N 263 N2C HD2 H N N 264 N2C HD3 H N N 265 N2C HN1 H N N 266 N2C HN2 H N N 267 N2C HN3 H N N 268 N2C HXT H N N 269 NCY N N N N 270 NCY CA C N R 271 NCY CB C N N 272 NCY SG S N N 273 NCY CN C N N 274 NCY C C N N 275 NCY O O N N 276 NCY OXT O N N 277 NCY H H N N 278 NCY HA H N N 279 NCY HB2 H N N 280 NCY HB3 H N N 281 NCY HG H N N 282 NCY HCN1 H N N 283 NCY HCN2 H N N 284 NCY HCN3 H N N 285 NCY HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 PXZ C1 C Y N 304 PXZ C0 C N N 305 PXZ O1 O N N 306 PXZ C2 C Y N 307 PXZ N2 N N N 308 PXZ C3 C Y N 309 PXZ O3 O N N 310 PXZ C4 C Y N 311 PXZ O5 O Y N 312 PXZ C6 C Y N 313 PXZ C7 C Y N 314 PXZ C8 C Y N 315 PXZ C9 C Y N 316 PXZ "C0'" C N N 317 PXZ "O1'" O N N 318 PXZ N10 N Y N 319 PXZ C11 C Y N 320 PXZ C12 C Y N 321 PXZ C13 C Y N 322 PXZ C14 C Y N 323 PXZ C15 C N N 324 PXZ C16 C N N 325 PXZ H1 H N N 326 PXZ HN21 H N N 327 PXZ HN22 H N N 328 PXZ H7 H N N 329 PXZ H8 H N N 330 PXZ "H1'" H N N 331 PXZ H151 H N N 332 PXZ H152 H N N 333 PXZ H153 H N N 334 PXZ H161 H N N 335 PXZ H162 H N N 336 PXZ H163 H N N 337 QUI N1 N Y N 338 QUI C2 C Y N 339 QUI C3 C Y N 340 QUI N4 N Y N 341 QUI C5 C Y N 342 QUI C6 C Y N 343 QUI C7 C Y N 344 QUI C8 C Y N 345 QUI C9 C Y N 346 QUI C10 C Y N 347 QUI C C N N 348 QUI O1 O N N 349 QUI O2 O N N 350 QUI H3 H N N 351 QUI H5 H N N 352 QUI H6 H N N 353 QUI H7 H N N 354 QUI H8 H N N 355 QUI HO2 H N N 356 SAR N N N N 357 SAR CA C N N 358 SAR C C N N 359 SAR O O N N 360 SAR CN C N N 361 SAR OXT O N N 362 SAR H H N N 363 SAR HA2 H N N 364 SAR HA3 H N N 365 SAR HN1 H N N 366 SAR HN2 H N N 367 SAR HN3 H N N 368 SAR HXT H N N 369 THR N N N N 370 THR CA C N S 371 THR C C N N 372 THR O O N N 373 THR CB C N R 374 THR OG1 O N N 375 THR CG2 C N N 376 THR OXT O N N 377 THR H H N N 378 THR H2 H N N 379 THR HA H N N 380 THR HB H N N 381 THR HG1 H N N 382 THR HG21 H N N 383 THR HG22 H N N 384 THR HG23 H N N 385 THR HXT H N N 386 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 BRU N1 C2 sing N N 13 BRU N1 C6 sing N N 14 BRU N1 "C1'" sing N N 15 BRU C2 N3 sing N N 16 BRU C2 O2 doub N N 17 BRU N3 C4 sing N N 18 BRU N3 HN3 sing N N 19 BRU C4 C5 sing N N 20 BRU C4 O4 doub N N 21 BRU C5 C6 doub N N 22 BRU C5 BR sing N N 23 BRU C6 H6 sing N N 24 BRU "C1'" "C2'" sing N N 25 BRU "C1'" "O4'" sing N N 26 BRU "C1'" "H1'" sing N N 27 BRU "C2'" "C3'" sing N N 28 BRU "C2'" "H2'" sing N N 29 BRU "C2'" "H2''" sing N N 30 BRU "C3'" "C4'" sing N N 31 BRU "C3'" "O3'" sing N N 32 BRU "C3'" "H3'" sing N N 33 BRU "C4'" "O4'" sing N N 34 BRU "C4'" "C5'" sing N N 35 BRU "C4'" "H4'" sing N N 36 BRU "O3'" "HO3'" sing N N 37 BRU "C5'" "O5'" sing N N 38 BRU "C5'" "H5'" sing N N 39 BRU "C5'" "H5''" sing N N 40 BRU "O5'" P sing N N 41 BRU P OP1 doub N N 42 BRU P OP2 sing N N 43 BRU P OP3 sing N N 44 BRU OP2 HOP2 sing N N 45 BRU OP3 HOP3 sing N N 46 DA OP3 P sing N N 47 DA OP3 HOP3 sing N N 48 DA P OP1 doub N N 49 DA P OP2 sing N N 50 DA P "O5'" sing N N 51 DA OP2 HOP2 sing N N 52 DA "O5'" "C5'" sing N N 53 DA "C5'" "C4'" sing N N 54 DA "C5'" "H5'" sing N N 55 DA "C5'" "H5''" sing N N 56 DA "C4'" "O4'" sing N N 57 DA "C4'" "C3'" sing N N 58 DA "C4'" "H4'" sing N N 59 DA "O4'" "C1'" sing N N 60 DA "C3'" "O3'" sing N N 61 DA "C3'" "C2'" sing N N 62 DA "C3'" "H3'" sing N N 63 DA "O3'" "HO3'" sing N N 64 DA "C2'" "C1'" sing N N 65 DA "C2'" "H2'" sing N N 66 DA "C2'" "H2''" sing N N 67 DA "C1'" N9 sing N N 68 DA "C1'" "H1'" sing N N 69 DA N9 C8 sing Y N 70 DA N9 C4 sing Y N 71 DA C8 N7 doub Y N 72 DA C8 H8 sing N N 73 DA N7 C5 sing Y N 74 DA C5 C6 sing Y N 75 DA C5 C4 doub Y N 76 DA C6 N6 sing N N 77 DA C6 N1 doub Y N 78 DA N6 H61 sing N N 79 DA N6 H62 sing N N 80 DA N1 C2 sing Y N 81 DA C2 N3 doub Y N 82 DA C2 H2 sing N N 83 DA N3 C4 sing Y N 84 DC OP3 P sing N N 85 DC OP3 HOP3 sing N N 86 DC P OP1 doub N N 87 DC P OP2 sing N N 88 DC P "O5'" sing N N 89 DC OP2 HOP2 sing N N 90 DC "O5'" "C5'" sing N N 91 DC "C5'" "C4'" sing N N 92 DC "C5'" "H5'" sing N N 93 DC "C5'" "H5''" sing N N 94 DC "C4'" "O4'" sing N N 95 DC "C4'" "C3'" sing N N 96 DC "C4'" "H4'" sing N N 97 DC "O4'" "C1'" sing N N 98 DC "C3'" "O3'" sing N N 99 DC "C3'" "C2'" sing N N 100 DC "C3'" "H3'" sing N N 101 DC "O3'" "HO3'" sing N N 102 DC "C2'" "C1'" sing N N 103 DC "C2'" "H2'" sing N N 104 DC "C2'" "H2''" sing N N 105 DC "C1'" N1 sing N N 106 DC "C1'" "H1'" sing N N 107 DC N1 C2 sing N N 108 DC N1 C6 sing N N 109 DC C2 O2 doub N N 110 DC C2 N3 sing N N 111 DC N3 C4 doub N N 112 DC C4 N4 sing N N 113 DC C4 C5 sing N N 114 DC N4 H41 sing N N 115 DC N4 H42 sing N N 116 DC C5 C6 doub N N 117 DC C5 H5 sing N N 118 DC C6 H6 sing N N 119 DG OP3 P sing N N 120 DG OP3 HOP3 sing N N 121 DG P OP1 doub N N 122 DG P OP2 sing N N 123 DG P "O5'" sing N N 124 DG OP2 HOP2 sing N N 125 DG "O5'" "C5'" sing N N 126 DG "C5'" "C4'" sing N N 127 DG "C5'" "H5'" sing N N 128 DG "C5'" "H5''" sing N N 129 DG "C4'" "O4'" sing N N 130 DG "C4'" "C3'" sing N N 131 DG "C4'" "H4'" sing N N 132 DG "O4'" "C1'" sing N N 133 DG "C3'" "O3'" sing N N 134 DG "C3'" "C2'" sing N N 135 DG "C3'" "H3'" sing N N 136 DG "O3'" "HO3'" sing N N 137 DG "C2'" "C1'" sing N N 138 DG "C2'" "H2'" sing N N 139 DG "C2'" "H2''" sing N N 140 DG "C1'" N9 sing N N 141 DG "C1'" "H1'" sing N N 142 DG N9 C8 sing Y N 143 DG N9 C4 sing Y N 144 DG C8 N7 doub Y N 145 DG C8 H8 sing N N 146 DG N7 C5 sing Y N 147 DG C5 C6 sing N N 148 DG C5 C4 doub Y N 149 DG C6 O6 doub N N 150 DG C6 N1 sing N N 151 DG N1 C2 sing N N 152 DG N1 H1 sing N N 153 DG C2 N2 sing N N 154 DG C2 N3 doub N N 155 DG N2 H21 sing N N 156 DG N2 H22 sing N N 157 DG N3 C4 sing N N 158 DSN N CA sing N N 159 DSN N H sing N N 160 DSN N H2 sing N N 161 DSN CA C sing N N 162 DSN CA CB sing N N 163 DSN CA HA sing N N 164 DSN C O doub N N 165 DSN C OXT sing N N 166 DSN OXT HXT sing N N 167 DSN CB OG sing N N 168 DSN CB HB2 sing N N 169 DSN CB HB3 sing N N 170 DSN OG HG sing N N 171 DT OP3 P sing N N 172 DT OP3 HOP3 sing N N 173 DT P OP1 doub N N 174 DT P OP2 sing N N 175 DT P "O5'" sing N N 176 DT OP2 HOP2 sing N N 177 DT "O5'" "C5'" sing N N 178 DT "C5'" "C4'" sing N N 179 DT "C5'" "H5'" sing N N 180 DT "C5'" "H5''" sing N N 181 DT "C4'" "O4'" sing N N 182 DT "C4'" "C3'" sing N N 183 DT "C4'" "H4'" sing N N 184 DT "O4'" "C1'" sing N N 185 DT "C3'" "O3'" sing N N 186 DT "C3'" "C2'" sing N N 187 DT "C3'" "H3'" sing N N 188 DT "O3'" "HO3'" sing N N 189 DT "C2'" "C1'" sing N N 190 DT "C2'" "H2'" sing N N 191 DT "C2'" "H2''" sing N N 192 DT "C1'" N1 sing N N 193 DT "C1'" "H1'" sing N N 194 DT N1 C2 sing N N 195 DT N1 C6 sing N N 196 DT C2 O2 doub N N 197 DT C2 N3 sing N N 198 DT N3 C4 sing N N 199 DT N3 H3 sing N N 200 DT C4 O4 doub N N 201 DT C4 C5 sing N N 202 DT C5 C7 sing N N 203 DT C5 C6 doub N N 204 DT C7 H71 sing N N 205 DT C7 H72 sing N N 206 DT C7 H73 sing N N 207 DT C6 H6 sing N N 208 DVA N CA sing N N 209 DVA N H sing N N 210 DVA N H2 sing N N 211 DVA CA CB sing N N 212 DVA CA C sing N N 213 DVA CA HA sing N N 214 DVA CB CG1 sing N N 215 DVA CB CG2 sing N N 216 DVA CB HB sing N N 217 DVA CG1 HG11 sing N N 218 DVA CG1 HG12 sing N N 219 DVA CG1 HG13 sing N N 220 DVA CG2 HG21 sing N N 221 DVA CG2 HG22 sing N N 222 DVA CG2 HG23 sing N N 223 DVA C O doub N N 224 DVA C OXT sing N N 225 DVA OXT HXT sing N N 226 HOH O H1 sing N N 227 HOH O H2 sing N N 228 MVA N CN sing N N 229 MVA N CA sing N N 230 MVA N H sing N N 231 MVA CN HN1 sing N N 232 MVA CN HN2 sing N N 233 MVA CN HN3 sing N N 234 MVA CA CB sing N N 235 MVA CA C sing N N 236 MVA CA HA sing N N 237 MVA CB CG1 sing N N 238 MVA CB CG2 sing N N 239 MVA CB HB sing N N 240 MVA CG1 HG11 sing N N 241 MVA CG1 HG12 sing N N 242 MVA CG1 HG13 sing N N 243 MVA CG2 HG21 sing N N 244 MVA CG2 HG22 sing N N 245 MVA CG2 HG23 sing N N 246 MVA C O doub N N 247 MVA C OXT sing N N 248 MVA OXT HXT sing N N 249 N2C N CA sing N N 250 N2C N CN sing N N 251 N2C N H sing N N 252 N2C CA CB sing N N 253 N2C CA C sing N N 254 N2C CA HA sing N N 255 N2C CB SG sing N N 256 N2C CB HB2 sing N N 257 N2C CB HB3 sing N N 258 N2C SG CD sing N N 259 N2C CD HD1 sing N N 260 N2C CD HD2 sing N N 261 N2C CD HD3 sing N N 262 N2C CN HN1 sing N N 263 N2C CN HN2 sing N N 264 N2C CN HN3 sing N N 265 N2C C O doub N N 266 N2C C OXT sing N N 267 N2C OXT HXT sing N N 268 NCY N CA sing N N 269 NCY N CN sing N N 270 NCY N H sing N N 271 NCY CA CB sing N N 272 NCY CA C sing N N 273 NCY CA HA sing N N 274 NCY CB SG sing N N 275 NCY CB HB2 sing N N 276 NCY CB HB3 sing N N 277 NCY SG HG sing N N 278 NCY CN HCN1 sing N N 279 NCY CN HCN2 sing N N 280 NCY CN HCN3 sing N N 281 NCY C O doub N N 282 NCY C OXT sing N N 283 NCY OXT HXT sing N N 284 PRO N CA sing N N 285 PRO N CD sing N N 286 PRO N H sing N N 287 PRO CA C sing N N 288 PRO CA CB sing N N 289 PRO CA HA sing N N 290 PRO C O doub N N 291 PRO C OXT sing N N 292 PRO CB CG sing N N 293 PRO CB HB2 sing N N 294 PRO CB HB3 sing N N 295 PRO CG CD sing N N 296 PRO CG HG2 sing N N 297 PRO CG HG3 sing N N 298 PRO CD HD2 sing N N 299 PRO CD HD3 sing N N 300 PRO OXT HXT sing N N 301 PXZ C1 C0 sing N N 302 PXZ C1 C2 doub Y N 303 PXZ C1 C11 sing Y N 304 PXZ C0 O1 doub N N 305 PXZ C0 H1 sing N N 306 PXZ C2 N2 sing N N 307 PXZ C2 C3 sing Y N 308 PXZ N2 HN21 sing N N 309 PXZ N2 HN22 sing N N 310 PXZ C3 O3 doub N N 311 PXZ C3 C4 sing Y N 312 PXZ C4 C12 doub Y N 313 PXZ C4 C15 sing N N 314 PXZ O5 C12 sing Y N 315 PXZ O5 C13 sing Y N 316 PXZ C6 C7 doub Y N 317 PXZ C6 C13 sing Y N 318 PXZ C6 C16 sing N N 319 PXZ C7 C8 sing Y N 320 PXZ C7 H7 sing N N 321 PXZ C8 C9 doub Y N 322 PXZ C8 H8 sing N N 323 PXZ C9 "C0'" sing N N 324 PXZ C9 C14 sing Y N 325 PXZ "C0'" "O1'" doub N N 326 PXZ "C0'" "H1'" sing N N 327 PXZ N10 C11 doub Y N 328 PXZ N10 C14 sing Y N 329 PXZ C11 C12 sing Y N 330 PXZ C13 C14 doub Y N 331 PXZ C15 H151 sing N N 332 PXZ C15 H152 sing N N 333 PXZ C15 H153 sing N N 334 PXZ C16 H161 sing N N 335 PXZ C16 H162 sing N N 336 PXZ C16 H163 sing N N 337 QUI N1 C2 doub Y N 338 QUI N1 C9 sing Y N 339 QUI C2 C3 sing Y N 340 QUI C2 C sing N N 341 QUI C3 N4 doub Y N 342 QUI C3 H3 sing N N 343 QUI N4 C10 sing Y N 344 QUI C5 C6 doub Y N 345 QUI C5 C10 sing Y N 346 QUI C5 H5 sing N N 347 QUI C6 C7 sing Y N 348 QUI C6 H6 sing N N 349 QUI C7 C8 doub Y N 350 QUI C7 H7 sing N N 351 QUI C8 C9 sing Y N 352 QUI C8 H8 sing N N 353 QUI C9 C10 doub Y N 354 QUI C O1 doub N N 355 QUI C O2 sing N N 356 QUI O2 HO2 sing N N 357 SAR N CA sing N N 358 SAR N CN sing N N 359 SAR N H sing N N 360 SAR CA C sing N N 361 SAR CA HA2 sing N N 362 SAR CA HA3 sing N N 363 SAR C O doub N N 364 SAR C OXT sing N N 365 SAR CN HN1 sing N N 366 SAR CN HN2 sing N N 367 SAR CN HN3 sing N N 368 SAR OXT HXT sing N N 369 THR N CA sing N N 370 THR N H sing N N 371 THR N H2 sing N N 372 THR CA C sing N N 373 THR CA CB sing N N 374 THR CA HA sing N N 375 THR C O doub N N 376 THR C OXT sing N N 377 THR CB OG1 sing N N 378 THR CB CG2 sing N N 379 THR CB HB sing N N 380 THR OG1 HG1 sing N N 381 THR CG2 HG21 sing N N 382 THR CG2 HG22 sing N N 383 THR CG2 HG23 sing N N 384 THR OXT HXT sing N N 385 # _ndb_struct_conf_na.entry_id 7XDJ _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B BRU 7 1_555 -0.116 0.029 0.066 1.657 -11.411 9.181 1 A_DA1:BRU7_B A 1 ? B 7 ? 20 1 1 A DG 2 1_555 B DC 6 1_555 -0.194 -0.174 0.930 9.317 3.986 -2.486 2 A_DG2:DC6_B A 2 ? B 6 ? 19 1 1 A DC 3 1_555 B DG 5 1_555 0.304 -0.019 0.747 -9.882 7.631 6.240 3 A_DC3:DG5_B A 3 ? B 5 ? 19 1 1 A DG 4 1_555 B DA 4 1_555 -1.834 -3.622 -0.601 3.687 -12.825 73.553 4 A_DG4:DA4_B A 4 ? B 4 ? ? 3 1 A DC 5 1_555 B DG 3 1_555 0.179 -0.039 0.613 -19.468 1.058 -4.793 5 A_DC5:DG3_B A 5 ? B 3 ? 19 1 1 A DG 6 1_555 B DC 2 1_555 0.041 -0.010 0.375 16.688 0.825 -2.069 6 A_DG6:DC2_B A 6 ? B 2 ? 19 1 1 A DT 7 1_555 B DA 1 1_555 -0.658 -0.150 0.300 -7.779 7.228 -1.927 7 A_DT7:DA1_B A 7 ? B 1 ? 20 1 1 D DC 6 1_555 C DG 2 1_555 0.179 -0.135 0.810 -10.831 3.332 -1.832 8 F_DC6:DG2_E F 6 ? E 2 ? 19 1 1 D BRU 7 1_555 C DA 1 1_555 -0.373 -0.113 0.010 -2.231 -12.958 7.064 9 F_BRU7:DA1_E F 7 ? E 1 ? 20 1 1 E DG 6 1_555 F DC 2 1_555 -0.170 0.129 0.523 23.512 0.815 -3.032 10 I_DG6:DC2_J I 6 ? J 2 ? 19 1 1 C DC 3 1_555 D DG 5 1_555 0.407 -0.017 0.832 -12.716 7.297 6.534 11 E_DC3:DG5_F E 3 ? F 5 ? 19 1 1 C DG 4 1_555 D DA 4 1_555 -2.195 -3.465 -0.589 3.562 -12.289 69.947 12 E_DG4:DA4_F E 4 ? F 4 ? ? 3 1 C DC 5 1_555 D DG 3 1_555 0.283 -0.025 0.602 -20.506 4.349 -5.267 13 E_DC5:DG3_F E 5 ? F 3 ? 19 1 1 C DG 6 1_555 D DC 2 1_555 0.013 -0.011 0.442 18.224 1.384 -2.653 14 E_DG6:DC2_F E 6 ? F 2 ? 19 1 1 C DT 7 1_555 D DA 1 1_555 -0.799 -0.085 0.381 -4.060 11.841 0.360 15 E_DT7:DA1_F E 7 ? F 1 ? 20 1 1 F DC 6 1_555 E DG 2 1_555 0.379 -0.157 0.743 -8.172 7.691 1.102 16 J_DC6:DG2_I J 6 ? I 2 ? 19 1 1 F BRU 7 1_555 E DA 1 1_555 0.046 -0.166 0.093 2.651 -13.852 1.350 17 J_BRU7:DA1_I J 7 ? I 1 ? 20 1 1 I DG 3 1_555 H DC 5 1_555 -0.470 -0.061 0.326 18.590 -1.480 -2.565 18 N_DG3:DC5_M N 3 ? M 5 ? 19 1 1 I DC 2 1_555 H DG 6 1_555 0.315 0.118 0.612 -28.257 0.615 2.236 19 N_DC2:DG6_M N 2 ? M 6 ? 19 1 1 I DA 1 1_555 H DT 7 1_555 -0.125 -0.030 0.137 -1.363 7.713 -8.230 20 N_DA1:DT7_M N 1 ? M 7 ? 20 1 1 E DC 3 1_555 F DG 5 1_555 0.286 0.013 0.820 -16.648 12.062 0.247 21 I_DC3:DG5_J I 3 ? J 5 ? 19 1 1 E DG 4 1_555 F DA 4 1_555 6.054 -1.547 0.207 7.981 17.489 46.370 22 I_DG4:DA4_J I 4 ? J 4 ? ? ? 1 E DC 5 1_555 F DG 3 1_555 0.183 0.145 0.479 -20.137 2.398 0.220 23 I_DC5:DG3_J I 5 ? J 3 ? 19 1 1 E DT 7 1_555 F DA 1 1_555 -0.170 0.000 0.281 -1.156 8.444 -8.530 24 I_DT7:DA1_J I 7 ? J 1 ? 20 1 1 H DA 1 1_555 I BRU 7 1_555 0.071 -0.104 0.102 -5.322 -12.123 3.243 25 M_DA1:BRU7_N M 1 ? N 7 ? 20 1 1 H DG 2 1_555 I DC 6 1_555 -0.406 -0.251 0.544 7.377 8.847 -0.356 26 M_DG2:DC6_N M 2 ? N 6 ? 19 1 1 H DC 3 1_555 I DG 5 1_555 0.321 -0.175 0.634 -13.256 12.369 -1.195 27 M_DC3:DG5_N M 3 ? N 5 ? 19 1 1 H DG 4 1_555 I DA 4 1_555 6.358 -2.080 0.261 10.624 15.669 42.038 28 M_DG4:DA4_N M 4 ? N 4 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B BRU 7 1_555 A DG 2 1_555 B DC 6 1_555 -0.036 0.646 3.238 -6.130 4.093 29.192 0.401 -1.193 3.237 7.961 11.924 30.088 1 AA_DA1DG2:DC6BRU7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 3 1_555 B DG 5 1_555 A DG 4 1_555 B DA 4 1_555 1.966 -3.624 1.756 -171.300 32.769 140.584 -1.853 -1.199 0.774 16.415 85.811 178.114 2 AA_DC3DG4:DA4DG5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A DG 4 1_555 B DA 4 1_555 A DC 5 1_555 B DG 3 1_555 4.261 5.746 -1.288 -132.103 109.177 -48.217 -2.434 2.675 -0.871 -56.211 -68.015 -172.132 3 AA_DG4DC5:DG3DA4_BB A 4 ? B 4 ? A 5 ? B 3 ? 1 A DC 5 1_555 B DG 3 1_555 A DG 6 1_555 B DC 2 1_555 0.064 2.239 2.762 0.655 -1.528 10.999 13.396 0.459 2.428 -7.912 -3.392 11.123 4 AA_DC5DG6:DC2DG3_BB A 5 ? B 3 ? A 6 ? B 2 ? 1 A DG 6 1_555 B DC 2 1_555 A DT 7 1_555 B DA 1 1_555 -0.509 0.384 7.057 -9.808 -2.062 10.101 5.776 -18.033 5.314 -9.235 43.928 14.220 5 AA_DG6DT7:DA1DC2_BB A 6 ? B 2 ? A 7 ? B 1 ? 1 D DC 6 1_555 C DG 2 1_555 D BRU 7 1_555 C DA 1 1_555 -0.158 0.637 3.172 5.783 4.091 26.328 0.349 1.754 3.128 8.781 -12.412 27.248 6 FF_DC6BRU7:DA1DG2_EE F 6 ? E 2 ? F 7 ? E 1 ? 1 D BRU 7 1_555 C DA 1 1_555 E DG 6 1_555 F DC 2 1_555 0.405 6.024 0.893 18.517 107.080 -175.352 -3.026 0.205 0.695 -53.562 9.262 -177.290 7 FI_BRU7DG6:DC2DA1_JE F 7 ? E 1 ? I 6 ? J 2 ? 1 C DC 3 1_555 D DG 5 1_555 C DG 4 1_555 D DA 4 1_555 1.751 -3.585 1.769 -169.852 35.816 135.579 -1.843 -1.113 0.712 17.957 85.158 177.577 8 EE_DC3DG4:DA4DG5_FF E 3 ? F 5 ? E 4 ? F 4 ? 1 C DG 4 1_555 D DA 4 1_555 C DC 5 1_555 D DG 3 1_555 4.372 5.645 -1.502 -130.134 111.880 -58.518 -2.340 2.759 -1.054 -57.335 -66.690 -172.687 9 EE_DG4DC5:DG3DA4_FF E 4 ? F 4 ? E 5 ? F 3 ? 1 C DC 5 1_555 D DG 3 1_555 C DG 6 1_555 D DC 2 1_555 -0.071 2.172 2.718 -0.225 -2.008 10.031 14.926 0.090 2.242 -11.332 1.269 10.232 10 EE_DC5DG6:DC2DG3_FF E 5 ? F 3 ? E 6 ? F 2 ? 1 C DG 6 1_555 D DC 2 1_555 C DT 7 1_555 D DA 1 1_555 -0.265 0.307 7.022 -10.684 -5.553 11.867 8.920 -14.249 5.009 -21.016 40.439 16.890 11 EE_DG6DT7:DA1DC2_FF E 6 ? F 2 ? E 7 ? F 1 ? 1 F DC 6 1_555 E DG 2 1_555 F BRU 7 1_555 E DA 1 1_555 0.007 0.488 3.078 6.321 8.353 28.263 -0.707 1.233 3.028 16.410 -12.417 30.104 12 JJ_DC6BRU7:DA1DG2_II J 6 ? I 2 ? J 7 ? I 1 ? 1 F BRU 7 1_555 E DA 1 1_555 I DG 3 1_555 H DC 5 1_555 -0.118 -6.131 0.483 -16.351 -109.242 172.907 -3.052 0.057 0.792 -54.672 8.183 175.957 13 JN_BRU7DG3:DC5DA1_MI J 7 ? I 1 ? N 3 ? M 5 ? 1 I DG 3 1_555 H DC 5 1_555 I DC 2 1_555 H DG 6 1_555 0.057 -1.931 -2.437 -0.903 -1.507 -6.783 11.154 3.256 -2.767 12.463 -7.472 -7.006 14 NN_DG3DC2:DG6DC5_MM N 3 ? M 5 ? N 2 ? M 6 ? 1 I DC 2 1_555 H DG 6 1_555 I DA 1 1_555 H DT 7 1_555 -1.137 -0.781 -7.148 -2.213 3.536 -32.623 2.699 -1.182 -7.086 -6.262 -3.920 -32.882 15 NN_DC2DA1:DT7DG6_MM N 2 ? M 6 ? N 1 ? M 7 ? 1 E DC 3 1_555 F DG 5 1_555 E DG 4 1_555 F DA 4 1_555 2.652 3.258 2.853 3.307 15.030 49.317 2.682 -2.816 3.790 17.526 -3.856 51.519 16 II_DC3DG4:DA4DG5_JJ I 3 ? J 5 ? I 4 ? J 4 ? 1 E DG 4 1_555 F DA 4 1_555 E DC 5 1_555 F DG 3 1_555 0.370 -1.531 7.316 12.237 1.052 -12.895 3.575 17.190 5.150 -3.751 43.615 -17.791 17 II_DG4DC5:DG3DA4_JJ I 4 ? J 4 ? I 5 ? J 3 ? 1 H DA 1 1_555 I BRU 7 1_555 H DG 2 1_555 I DC 6 1_555 -0.036 0.527 2.986 -4.539 9.554 27.744 -0.868 -0.830 2.969 19.069 9.059 29.655 18 MM_DA1DG2:DC6BRU7_NN M 1 ? N 7 ? M 2 ? N 6 ? 1 H DC 3 1_555 I DG 5 1_555 H DG 4 1_555 I DA 4 1_555 2.380 3.301 2.878 4.857 17.387 51.876 2.472 -2.276 3.912 19.225 -5.370 54.721 19 MM_DC3DG4:DA4DG5_NN M 3 ? N 5 ? M 4 ? N 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Science and Technology (MoST, Taiwan)' Taiwan 109-2628-M-005-001-MY4 1 'Ministry of Science and Technology (MoST, Taiwan)' Taiwan 109-2311-B-005-007-MY3 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'CHLORIDE ION' CL 6 'MAGNESIUM ION' MG 7 2-CARBOXYQUINOXALINE QUI 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7DQ0 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #