HEADER TRANSFERASE 31-MAR-22 7XEZ TITLE NMR SOLUTION STRUCTURES OF P300 TAZ2 DOMAIN IN COMPLEX WITH BRD4-NUT TITLE 2 F1C DOMAIN BINDING MOTIF #2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE P300,NUT FAMILY MEMBER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P300 HAT,E1A-ASSOCIATED PROTEIN P300,HISTONE COMPND 5 BUTYRYLTRANSFERASE P300,HISTONE CROTONYLTRANSFERASE P300,PROTEIN 2- COMPND 6 HYDROXYISOBUTYRYLTRANSFERASE P300,PROTEIN LACTYLTRANSFERAS P300, COMPND 7 PROTEIN PROPIONYLTRANSFERASE P300,NUCLEAR PROTEIN IN TESTIS; COMPND 8 EC: 2.3.1.48,2.3.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: THE FUSION PROTEIN OF P300 (UNP RESIDUES 1723-1812), COMPND 12 LINKERS AND NUT (UNP RESIDUES 419-470) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EP300, P300, NUTM1, C15ORF55, NUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BRD4-NUT FUSION PROTEIN, CBP/P300, TAZ2 DOMAIN, F1C DOMAIN, NUT KEYWDS 2 CARCINOMA, PEPTIDE BINDING PROTEIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.YU,L.ZENG,M.-M.ZHOU REVDAT 3 30-OCT-24 7XEZ 1 JRNL REVDAT 2 15-MAY-24 7XEZ 1 REMARK REVDAT 1 12-APR-23 7XEZ 0 JRNL AUTH D.YU,Y.LIANG,C.KIM,A.JAGANATHAN,D.JI,X.HAN,X.YANG,Y.JIA, JRNL AUTH 2 R.GU,C.WANG,Q.ZHANG,K.L.CHEUNG,M.M.ZHOU,L.ZENG JRNL TITL STRUCTURAL MECHANISM OF BRD4-NUT AND P300 BIPARTITE JRNL TITL 2 INTERACTION IN PROPAGATING ABERRANT GENE TRANSCRIPTION IN JRNL TITL 3 CHROMATIN IN NUT CARCINOMA. JRNL REF NAT COMMUN V. 14 378 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36690674 JRNL DOI 10.1038/S41467-023-36063-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028688. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 P300 TAZ2 DOMAIN IN FUSION WITH REMARK 210 BRD4-NUT F1C DOMAIN BINDING REMARK 210 MOTIF #2, 200 MM SODIUM REMARK 210 PHOSPHATE, 3 MM [U-100% 2H] DTT, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-100% REMARK 210 13C; U-100% 15N] P300 TAZ2 REMARK 210 DOMAIN IN FUSION WITH BRD4-NUT REMARK 210 F1C DOMAIN BINDING MOTIF #2, 200 REMARK 210 MM SODIUM PHOSPHATE, 3 MM [U-100% REMARK 210 2H] DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HN(COCA)CB; 3D 1H REMARK 210 -15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TOPSPIN, NMRPIPE REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 GLU A 136 HG3 ARG A 139 1.24 REMARK 500 HZ2 LYS A 65 OE2 GLU A 152 1.53 REMARK 500 O LEU A 154 HG1 THR A 155 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 72.78 62.66 REMARK 500 1 LYS A 56 -71.74 -37.27 REMARK 500 1 LYS A 82 50.81 -105.19 REMARK 500 1 LYS A 94 -56.03 -124.88 REMARK 500 1 SER A 102 175.23 179.60 REMARK 500 1 SER A 111 95.51 -65.18 REMARK 500 1 GLN A 113 39.94 -95.41 REMARK 500 1 LYS A 114 -53.27 -138.31 REMARK 500 1 ALA A 122 -81.13 -89.92 REMARK 500 1 HIS A 125 73.47 44.68 REMARK 500 1 PRO A 126 -25.65 -33.68 REMARK 500 1 THR A 155 149.30 60.39 REMARK 500 1 LEU A 156 -49.24 67.31 REMARK 500 2 LYS A 56 -71.85 -35.53 REMARK 500 2 LYS A 82 52.84 -105.93 REMARK 500 2 LYS A 94 -56.25 -123.89 REMARK 500 2 SER A 99 49.17 -104.30 REMARK 500 2 SER A 102 -40.26 -161.67 REMARK 500 2 LYS A 114 -55.05 -175.11 REMARK 500 2 PHE A 116 -167.46 -72.39 REMARK 500 2 VAL A 120 -57.76 -125.99 REMARK 500 2 ALA A 122 -66.92 -95.08 REMARK 500 2 HIS A 125 73.46 53.24 REMARK 500 2 PRO A 126 -21.97 -35.93 REMARK 500 2 GLN A 138 40.07 -94.50 REMARK 500 2 LEU A 154 -95.34 29.24 REMARK 500 2 LEU A 156 -19.99 148.21 REMARK 500 3 ARG A 4 40.17 -109.49 REMARK 500 3 SER A 36 43.51 -143.71 REMARK 500 3 LYS A 56 -71.97 -38.50 REMARK 500 3 HIS A 77 30.01 -94.11 REMARK 500 3 LYS A 94 -57.60 -124.72 REMARK 500 3 SER A 102 97.89 64.75 REMARK 500 3 GLN A 113 54.01 -114.41 REMARK 500 3 LYS A 114 -62.93 -165.11 REMARK 500 3 VAL A 120 -67.17 -120.76 REMARK 500 3 ALA A 122 -78.97 -83.94 REMARK 500 3 HIS A 125 72.50 50.60 REMARK 500 3 PRO A 126 -27.72 -31.48 REMARK 500 3 GLN A 138 57.56 -90.67 REMARK 500 3 THR A 155 142.80 58.29 REMARK 500 3 LEU A 156 -48.44 66.83 REMARK 500 3 GLN A 158 102.10 -47.62 REMARK 500 3 LYS A 162 -157.48 46.09 REMARK 500 4 LYS A 54 -42.73 -134.50 REMARK 500 4 LYS A 56 -72.15 -38.72 REMARK 500 4 HIS A 77 30.64 -98.73 REMARK 500 4 LYS A 94 -56.51 -125.95 REMARK 500 4 LYS A 114 -58.34 -170.52 REMARK 500 4 PHE A 116 -177.65 -63.42 REMARK 500 REMARK 500 THIS ENTRY HAS 288 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 CYS A 30 SG 107.0 REMARK 620 3 CYS A 35 SG 106.8 115.4 REMARK 620 4 CYS A 40 SG 103.5 110.9 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 CYS A 53 SG 107.8 REMARK 620 3 CYS A 61 SG 110.3 111.4 REMARK 620 4 CYS A 64 SG 106.0 111.6 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 CYS A 78 SG 108.8 REMARK 620 3 CYS A 83 SG 106.3 114.0 REMARK 620 4 CYS A 88 SG 105.6 110.3 111.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36480 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURES OF P300 TAZ2 DOMAIN IN COMPLEX WITH BRD4- REMARK 900 NUT F1C DOMAIN BINDING MOTIF #2 DBREF 7XEZ A 5 94 UNP Q09472 EP300_HUMAN 1723 1812 DBREF 7XEZ A 112 163 UNP Q86Y26 NUTM1_HUMAN 419 470 SEQADV 7XEZ SER A 1 UNP Q09472 EXPRESSION TAG SEQADV 7XEZ GLY A 2 UNP Q09472 EXPRESSION TAG SEQADV 7XEZ GLY A 3 UNP Q09472 EXPRESSION TAG SEQADV 7XEZ ARG A 4 UNP Q09472 EXPRESSION TAG SEQADV 7XEZ ALA A 20 UNP Q09472 CYS 1738 ENGINEERED MUTATION SEQADV 7XEZ ALA A 28 UNP Q09472 CYS 1746 ENGINEERED MUTATION SEQADV 7XEZ ALA A 71 UNP Q09472 CYS 1789 ENGINEERED MUTATION SEQADV 7XEZ ALA A 72 UNP Q09472 CYS 1790 ENGINEERED MUTATION SEQADV 7XEZ GLY A 95 UNP Q09472 LINKER SEQADV 7XEZ SER A 96 UNP Q09472 LINKER SEQADV 7XEZ GLY A 97 UNP Q09472 LINKER SEQADV 7XEZ GLY A 98 UNP Q09472 LINKER SEQADV 7XEZ SER A 99 UNP Q09472 LINKER SEQADV 7XEZ GLY A 100 UNP Q09472 LINKER SEQADV 7XEZ GLY A 101 UNP Q09472 LINKER SEQADV 7XEZ SER A 102 UNP Q09472 LINKER SEQADV 7XEZ GLY A 103 UNP Q09472 LINKER SEQADV 7XEZ GLY A 104 UNP Q09472 LINKER SEQADV 7XEZ SER A 105 UNP Q09472 LINKER SEQADV 7XEZ GLY A 106 UNP Q09472 LINKER SEQADV 7XEZ GLY A 107 UNP Q09472 LINKER SEQADV 7XEZ SER A 108 UNP Q09472 LINKER SEQADV 7XEZ GLY A 109 UNP Q09472 LINKER SEQADV 7XEZ GLY A 110 UNP Q09472 LINKER SEQADV 7XEZ SER A 111 UNP Q09472 LINKER SEQRES 1 A 163 SER GLY GLY ARG ALA THR GLN SER PRO GLY ASP SER ARG SEQRES 2 A 163 ARG LEU SER ILE GLN ARG ALA ILE GLN SER LEU VAL HIS SEQRES 3 A 163 ALA ALA GLN CYS ARG ASN ALA ASN CYS SER LEU PRO SER SEQRES 4 A 163 CYS GLN LYS MET LYS ARG VAL VAL GLN HIS THR LYS GLY SEQRES 5 A 163 CYS LYS ARG LYS THR ASN GLY GLY CYS PRO ILE CYS LYS SEQRES 6 A 163 GLN LEU ILE ALA LEU ALA ALA TYR HIS ALA LYS HIS CYS SEQRES 7 A 163 GLN GLU ASN LYS CYS PRO VAL PRO PHE CYS LEU ASN ILE SEQRES 8 A 163 LYS GLN LYS GLY SER GLY GLY SER GLY GLY SER GLY GLY SEQRES 9 A 163 SER GLY GLY SER GLY GLY SER SER GLN LYS VAL PHE VAL SEQRES 10 A 163 SER LYS VAL GLU ALA VAL ILE HIS PRO GLN PHE LEU ALA SEQRES 11 A 163 ASP LEU LEU SER PRO GLU LYS GLN ARG ASP PRO LEU ALA SEQRES 12 A 163 LEU ILE GLU GLU LEU GLU GLN GLU GLU GLY LEU THR LEU SEQRES 13 A 163 ALA GLN LEU VAL GLN LYS ARG HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 AA1 SER A 8 CYS A 30 1 23 HELIX 2 AA2 LEU A 37 CYS A 53 1 17 HELIX 3 AA3 CYS A 61 HIS A 77 1 17 HELIX 4 AA4 VAL A 85 LYS A 94 1 10 HELIX 5 AA5 PRO A 126 SER A 134 1 9 HELIX 6 AA6 ASP A 140 GLU A 152 1 13 LINK NE2 HIS A 26 ZN ZN A 502 1555 1555 2.24 LINK SG CYS A 30 ZN ZN A 502 1555 1555 2.44 LINK SG CYS A 35 ZN ZN A 502 1555 1555 2.56 LINK SG CYS A 40 ZN ZN A 502 1555 1555 2.41 LINK NE2 HIS A 49 ZN ZN A 501 1555 1555 2.18 LINK SG CYS A 53 ZN ZN A 501 1555 1555 2.24 LINK SG CYS A 61 ZN ZN A 501 1555 1555 2.27 LINK SG CYS A 64 ZN ZN A 501 1555 1555 2.32 LINK NE2 HIS A 74 ZN ZN A 503 1555 1555 2.11 LINK SG CYS A 78 ZN ZN A 503 1555 1555 2.41 LINK SG CYS A 83 ZN ZN A 503 1555 1555 2.30 LINK SG CYS A 88 ZN ZN A 503 1555 1555 2.39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1