HEADER LYASE 02-APR-22 7XFU TITLE MUCP PDZ2 DOMAIN WITH PEPTIDE GPAVLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZINC METALLOPROTEASE PA3649,PEPTIDE GPAVLA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MUCP; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PDZ2 DOMAIN WITH PEPTIDE GPAVLA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1, SYNTHETIC SOURCE 3 CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 208964, 32630; SOURCE 5 GENE: PA3649; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS MUCP, ALGINATE BIOSYNTHESIS, PSEUDOMONAS AERUGINOSA PAO1, CRYSTAL KEYWDS 2 STRUCTURE., LYASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LOU,S.LI,Q.ZHANG,M.BARTLAM REVDAT 2 29-NOV-23 7XFU 1 REMARK REVDAT 1 05-APR-23 7XFU 0 JRNL AUTH X.LOU,S.LI,Q.ZHANG,M.BARTLAM JRNL TITL MUCP PDZ2 DOMAIN WITH PEPTIDE GPAVLA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8700 - 3.6900 1.00 1341 146 0.1741 0.1769 REMARK 3 2 3.6900 - 2.9300 1.00 1317 144 0.1720 0.1979 REMARK 3 3 2.9300 - 2.5600 1.00 1341 152 0.1956 0.2444 REMARK 3 4 2.5600 - 2.3200 1.00 1294 149 0.1966 0.2175 REMARK 3 5 2.3200 - 2.1600 1.00 1328 144 0.1840 0.2274 REMARK 3 6 2.1600 - 2.0300 1.00 1331 145 0.1874 0.2159 REMARK 3 7 2.0300 - 1.9300 1.00 1317 144 0.1929 0.2506 REMARK 3 8 1.9300 - 1.8400 1.00 1311 141 0.1892 0.2541 REMARK 3 9 1.8400 - 1.7700 1.00 1338 145 0.2007 0.2192 REMARK 3 10 1.7700 - 1.7100 1.00 1334 136 0.1927 0.2704 REMARK 3 11 1.7100 - 1.6600 1.00 1295 145 0.2060 0.2360 REMARK 3 12 1.6600 - 1.6100 0.99 1329 144 0.1971 0.2611 REMARK 3 13 1.6100 - 1.5700 0.97 1296 141 0.2041 0.2353 REMARK 3 14 1.5700 - 1.5300 0.89 1135 125 0.2296 0.2849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.144 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1364 REMARK 3 ANGLE : 0.919 1848 REMARK 3 CHIRALITY : 0.061 216 REMARK 3 PLANARITY : 0.008 248 REMARK 3 DIHEDRAL : 5.222 202 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.9826 11.7661 -9.0065 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0980 REMARK 3 T33: 0.1070 T12: -0.0173 REMARK 3 T13: 0.0062 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0448 L22: 0.0443 REMARK 3 L33: 0.2023 L12: 0.0350 REMARK 3 L13: 0.0215 L23: 0.0167 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0089 S13: -0.0061 REMARK 3 S21: -0.0098 S22: -0.0019 S23: 0.0098 REMARK 3 S31: 0.0070 S32: -0.0100 S33: -0.0079 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7XFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6, REMARK 280 2.0M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.23350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.85025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.61675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 ALA A 312 REMARK 465 GLY B 310 REMARK 465 PRO B 311 REMARK 465 ALA B 312 DBREF 7XFU A 222 309 UNP Q9HXY3 Y3649_PSEAE 222 309 DBREF 7XFU A 310 315 PDB 7XFU 7XFU 310 315 DBREF 7XFU B 222 309 UNP Q9HXY3 Y3649_PSEAE 222 309 DBREF 7XFU B 310 315 PDB 7XFU 7XFU 310 315 SEQADV 7XFU SER A 221 UNP Q9HXY3 EXPRESSION TAG SEQADV 7XFU SER B 221 UNP Q9HXY3 EXPRESSION TAG SEQRES 1 A 95 SER LEU PRO PRO VAL LEU ALA GLU LEU ASP PRO LYS GLY SEQRES 2 A 95 PRO ALA GLN ALA ALA GLY LEU LYS LEU GLY ASP ARG LEU SEQRES 3 A 95 GLN SER ILE ASP GLY ILE ALA VAL ASP ASP TRP GLN GLN SEQRES 4 A 95 VAL VAL ASP SER VAL ARG ALA ARG PRO GLY GLN ARG VAL SEQRES 5 A 95 GLN LEU LYS VAL LEU ARG ASP GLY GLU VAL LEU ASP VAL SEQRES 6 A 95 ALA LEU GLU LEU ALA VAL ARG GLY GLU GLY LYS ALA ARG SEQRES 7 A 95 SER GLY TYR MET GLY ALA GLY VAL ALA GLY THR GLY PRO SEQRES 8 A 95 ALA VAL LEU ALA SEQRES 1 B 95 SER LEU PRO PRO VAL LEU ALA GLU LEU ASP PRO LYS GLY SEQRES 2 B 95 PRO ALA GLN ALA ALA GLY LEU LYS LEU GLY ASP ARG LEU SEQRES 3 B 95 GLN SER ILE ASP GLY ILE ALA VAL ASP ASP TRP GLN GLN SEQRES 4 B 95 VAL VAL ASP SER VAL ARG ALA ARG PRO GLY GLN ARG VAL SEQRES 5 B 95 GLN LEU LYS VAL LEU ARG ASP GLY GLU VAL LEU ASP VAL SEQRES 6 B 95 ALA LEU GLU LEU ALA VAL ARG GLY GLU GLY LYS ALA ARG SEQRES 7 B 95 SER GLY TYR MET GLY ALA GLY VAL ALA GLY THR GLY PRO SEQRES 8 B 95 ALA VAL LEU ALA FORMUL 3 HOH *247(H2 O) HELIX 1 AA1 GLY A 233 ALA A 238 1 6 HELIX 2 AA2 ASP A 256 ALA A 266 1 11 HELIX 3 AA3 GLU A 294 ARG A 298 5 5 HELIX 4 AA4 GLY B 233 ALA B 238 1 6 HELIX 5 AA5 ASP B 256 ALA B 266 1 11 HELIX 6 AA6 GLU B 294 ARG B 298 5 5 SHEET 1 AA1 3 GLU A 228 LEU A 229 0 SHEET 2 AA1 3 ALA A 304 GLY A 305 -1 O GLY A 305 N GLU A 228 SHEET 3 AA1 3 LEU A 314 ALA A 315 -1 O ALA A 315 N ALA A 304 SHEET 1 AA2 4 ILE A 252 ALA A 253 0 SHEET 2 AA2 4 ARG A 245 ILE A 249 -1 N ILE A 249 O ILE A 252 SHEET 3 AA2 4 ARG A 271 ARG A 278 -1 O LYS A 275 N GLN A 247 SHEET 4 AA2 4 GLU A 281 GLU A 288 -1 O VAL A 285 N LEU A 274 SHEET 1 AA3 2 ALA A 290 ARG A 292 0 SHEET 2 AA3 2 SER A 299 TYR A 301 -1 O SER A 299 N ARG A 292 SHEET 1 AA4 3 GLU B 228 LEU B 229 0 SHEET 2 AA4 3 ALA B 304 GLY B 305 -1 O GLY B 305 N GLU B 228 SHEET 3 AA4 3 LEU B 314 ALA B 315 -1 O ALA B 315 N ALA B 304 SHEET 1 AA5 4 ILE B 252 ALA B 253 0 SHEET 2 AA5 4 ARG B 245 ILE B 249 -1 N ILE B 249 O ILE B 252 SHEET 3 AA5 4 ARG B 271 ARG B 278 -1 O LYS B 275 N GLN B 247 SHEET 4 AA5 4 GLU B 281 GLU B 288 -1 O VAL B 285 N LEU B 274 SHEET 1 AA6 2 ALA B 290 ARG B 292 0 SHEET 2 AA6 2 SER B 299 TYR B 301 -1 O SER B 299 N ARG B 292 CRYST1 34.865 34.865 114.467 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008736 0.00000