HEADER DNA 20-APR-22 7XKM TITLE CRYSTAL STRUCTURE OF DNA-AG(I) ROD COMPRISING A ONE-DIMENSIONAL ARRAY TITLE 2 OF 11 SILVER IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*CP*(BRU)P*CP*(BRU)P*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, SILVER, ROD EXPDTA X-RAY DIFFRACTION AUTHOR J.KONDO,A.ONO,T.ATSUGI REVDAT 4 29-MAY-24 7XKM 1 REMARK REVDAT 3 19-OCT-22 7XKM 1 JRNL REVDAT 2 10-AUG-22 7XKM 1 JRNL REVDAT 1 06-JUL-22 7XKM 0 JRNL AUTH T.ATSUGI,A.ONO,M.TASAKA,N.EGUCHI,S.FUJIWARA,J.KONDO JRNL TITL A NOVEL AG I -DNA ROD COMPRISING A ONE-DIMENSIONAL ARRAY OF JRNL TITL 2 11 SILVER IONS WITHIN A DOUBLE HELICAL STRUCTURE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 04798 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 35641885 JRNL DOI 10.1002/ANIE.202204798 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9600 - 5.3400 1.00 1326 150 0.1670 0.1584 REMARK 3 2 5.3400 - 4.2400 1.00 1321 140 0.2061 0.2608 REMARK 3 3 4.2400 - 3.7100 1.00 1325 153 0.1823 0.1767 REMARK 3 4 3.7100 - 3.3700 1.00 1299 153 0.1973 0.2814 REMARK 3 5 3.3700 - 3.1300 1.00 1331 153 0.1999 0.2417 REMARK 3 6 3.1300 - 2.9400 1.00 1329 144 0.1846 0.2571 REMARK 3 7 2.9400 - 2.7900 0.99 1306 144 0.1939 0.2294 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300029056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 36.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.10 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 19.64 REMARK 200 R MERGE FOR SHELL (I) : 0.25700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.43 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SPERMINE, MOPS, LITHIUM NITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.24067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.48133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.86100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.10167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.62033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.24067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.48133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 103.10167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.86100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.62033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC B 3 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC B 9 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 2 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG D 2 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 1 N3 REMARK 620 2 DC B 11 N3 177.9 REMARK 620 3 DG D 12 O6 97.1 83.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 N7 REMARK 620 2 DG B 10 N7 167.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 3 N3 REMARK 620 2 DC B 9 N3 172.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 N7 REMARK 620 2 BRU B 8 N3 172.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 5 N3 REMARK 620 2 DC B 7 N3 172.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BRU A 6 N3 REMARK 620 2 BRU B 6 N3 171.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 7 N3 REMARK 620 2 DC B 5 N3 176.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BRU A 8 N3 REMARK 620 2 BRU A 8 O2 57.1 REMARK 620 3 DG B 4 N7 168.2 122.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 106 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 9 N3 REMARK 620 2 DC B 3 N3 177.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 107 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 10 N7 REMARK 620 2 DG B 2 N7 175.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 108 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 11 N3 REMARK 620 2 DC B 1 N3 168.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG D 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 1 N3 REMARK 620 2 DC D 11 N3 175.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 106 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 2 N7 REMARK 620 2 DG D 10 N7 163.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 3 N3 REMARK 620 2 DC D 9 N3 173.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG D 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 4 N7 REMARK 620 2 BRU D 8 N3 169.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG D 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 5 N3 REMARK 620 2 DC D 7 N3 169.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BRU C 6 N3 REMARK 620 2 BRU D 6 N3 167.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 7 N3 REMARK 620 2 DC D 5 N3 175.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BRU C 8 N3 REMARK 620 2 DG D 4 N7 170.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG D 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 9 N3 REMARK 620 2 DC D 3 N3 177.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG D 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 10 N7 REMARK 620 2 DG D 2 N7 170.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 11 N3 REMARK 620 2 DC D 1 N3 164.9 REMARK 620 N 1 DBREF 7XKM A 1 12 PDB 7XKM 7XKM 1 12 DBREF 7XKM B 1 12 PDB 7XKM 7XKM 1 12 DBREF 7XKM C 1 12 PDB 7XKM 7XKM 1 12 DBREF 7XKM D 1 12 PDB 7XKM 7XKM 1 12 SEQRES 1 A 12 DC DG DC DG DC BRU DC BRU DC DG DC DG SEQRES 1 B 12 DC DG DC DG DC BRU DC BRU DC DG DC DG SEQRES 1 C 12 DC DG DC DG DC BRU DC BRU DC DG DC DG SEQRES 1 D 12 DC DG DC DG DC BRU DC BRU DC DG DC DG HET BRU A 6 20 HET BRU A 8 20 HET BRU B 6 20 HET BRU B 8 20 HET BRU C 6 20 HET BRU C 8 20 HET BRU D 6 20 HET BRU D 8 20 HET AG A 101 1 HET AG A 102 1 HET AG A 103 1 HET AG A 104 1 HET AG A 105 1 HET AG A 106 1 HET AG A 107 1 HET AG A 108 1 HET AG A 109 1 HET AG B 101 1 HET AG B 102 1 HET AG B 103 1 HET AG C 101 1 HET AG C 102 1 HET AG C 103 1 HET AG C 104 1 HET AG C 105 1 HET AG C 106 1 HET AG D 101 1 HET AG D 102 1 HET AG D 103 1 HET AG D 104 1 HET AG D 105 1 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM AG SILVER ION FORMUL 1 BRU 8(C9 H12 BR N2 O8 P) FORMUL 5 AG 23(AG 1+) FORMUL 28 HOH *6(H2 O) LINK O3' DC A 5 P BRU A 6 1555 1555 1.60 LINK O3' BRU A 6 P DC A 7 1555 1555 1.60 LINK O3' DC A 7 P BRU A 8 1555 1555 1.60 LINK O3' BRU A 8 P DC A 9 1555 1555 1.61 LINK O3' DC B 5 P BRU B 6 1555 1555 1.60 LINK O3' BRU B 6 P DC B 7 1555 1555 1.60 LINK O3' DC B 7 P BRU B 8 1555 1555 1.61 LINK O3' BRU B 8 P DC B 9 1555 1555 1.60 LINK O3' DC C 5 P BRU C 6 1555 1555 1.60 LINK O3' BRU C 6 P DC C 7 1555 1555 1.60 LINK O3' DC C 7 P BRU C 8 1555 1555 1.60 LINK O3' BRU C 8 P DC C 9 1555 1555 1.61 LINK O3' DC D 5 P BRU D 6 1555 1555 1.60 LINK O3' BRU D 6 P DC D 7 1555 1555 1.61 LINK O3' DC D 7 P BRU D 8 1555 1555 1.60 LINK O3' BRU D 8 P DC D 9 1555 1555 1.61 LINK N3 DC A 1 AG AG B 101 1555 1555 2.21 LINK N7 DG A 2 AG AG B 102 1555 1555 2.18 LINK N3 DC A 3 AG AG A 101 1555 1555 2.19 LINK N7 DG A 4 AG AG A 102 1555 1555 2.24 LINK N3 DC A 5 AG AG B 103 1555 1555 2.13 LINK N3 BRU A 6 AG AG A 103 1555 1555 1.92 LINK N3 DC A 7 AG AG A 104 1555 1555 2.06 LINK N3 BRU A 8 AG AG A 105 1555 1555 1.95 LINK O2 BRU A 8 AG AG A 105 1555 1555 2.70 LINK N3 DC A 9 AG AG A 106 1555 1555 2.02 LINK N7 DG A 10 AG AG A 107 1555 1555 2.07 LINK N3 DC A 11 AG AG A 108 1555 1555 2.10 LINK AG AG A 101 N3 DC B 9 1555 1555 2.22 LINK AG AG A 102 N3 BRU B 8 1555 1555 1.92 LINK AG AG A 103 N3 BRU B 6 1555 1555 1.90 LINK AG AG A 104 N3 DC B 5 1555 1555 2.04 LINK AG AG A 105 N7 DG B 4 1555 1555 2.02 LINK AG AG A 106 N3 DC B 3 1555 1555 2.10 LINK AG AG A 107 N7 DG B 2 1555 1555 2.16 LINK AG AG A 108 N3 DC B 1 1555 1555 2.11 LINK N3 DC B 7 AG AG B 103 1555 1555 2.14 LINK N7 DG B 10 AG AG B 102 1555 1555 2.00 LINK N3 DC B 11 AG AG B 101 1555 1555 2.21 LINK AG AG B 101 O6 DG D 12 12666 1555 2.68 LINK N3 DC C 1 AG AG D 105 1555 1555 2.05 LINK N7 DG C 2 AG AG C 106 1555 1555 2.01 LINK N3 DC C 3 AG AG C 105 1555 1555 2.30 LINK N7 DG C 4 AG AG D 104 1555 1555 2.14 LINK N3 DC C 5 AG AG D 103 1555 1555 2.01 LINK N3 BRU C 6 AG AG C 104 1555 1555 1.88 LINK N3 DC C 7 AG AG C 103 1555 1555 2.15 LINK N3 BRU C 8 AG AG C 102 1555 1555 1.91 LINK N3 DC C 9 AG AG D 102 1555 1555 1.98 LINK N7 DG C 10 AG AG D 101 1555 1555 2.17 LINK N3 DC C 11 AG AG C 101 1555 1555 2.21 LINK AG AG C 101 N3 DC D 1 1555 1555 2.08 LINK AG AG C 102 N7 DG D 4 1555 1555 2.17 LINK AG AG C 103 N3 DC D 5 1555 1555 2.14 LINK AG AG C 104 N3 BRU D 6 1555 1555 1.94 LINK AG AG C 105 N3 DC D 9 1555 1555 2.00 LINK AG AG C 106 N7 DG D 10 1555 1555 2.05 LINK N7 DG D 2 AG AG D 101 1555 1555 2.18 LINK N3 DC D 3 AG AG D 102 1555 1555 2.14 LINK N3 DC D 7 AG AG D 103 1555 1555 2.00 LINK N3 BRU D 8 AG AG D 104 1555 1555 1.95 LINK N3 DC D 11 AG AG D 105 1555 1555 2.08 CRYST1 77.461 77.461 123.722 90.00 90.00 120.00 P 61 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012910 0.007453 0.000000 0.00000 SCALE2 0.000000 0.014907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008083 0.00000