HEADER METAL TRANSPORT 21-APR-22 7XLD TITLE CRYSTAL STRUCTURE OF ISDH LINKER-NEAT3 BOUND TO A NANOBODY (VHH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-REGULATED SURFACE DETERMINANT PROTEIN H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NEAT3; COMPND 5 SYNONYM: HAPTOGLOBIN RECEPTOR A,STAPHYLOCOCCUS AUREUS SURFACE PROTEIN COMPND 6 I; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NANOBODY VHH6; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50 / ATCC 700699; SOURCE 5 GENE: ISDH, HARA, SASI, SAV1731; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISDH SYSTEM HEME STAPHYLOCOCCUS AUREUS VHH NANODOBY ANTIMICROBIAL, KEYWDS 2 METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,S.VALENCIANO-BELLIDO,K.TSUMOTO REVDAT 3 29-NOV-23 7XLD 1 REMARK REVDAT 2 01-NOV-23 7XLD 1 JRNL REVDAT 1 31-MAY-23 7XLD 0 JRNL AUTH S.VALENCIANO-BELLIDO,J.M.M.CAAVEIRO,M.NAKAKIDO,D.KURODA, JRNL AUTH 2 C.AIKAWA,I.NAKAGAWA,K.TSUMOTO JRNL TITL TARGETING HEMOGLOBIN RECEPTORS ISDH AND ISDB OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS WITH A SINGLE VHH ANTIBODY INHIBITS JRNL TITL 3 BACTERIAL GROWTH. JRNL REF J.BIOL.CHEM. V. 299 04927 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37330175 JRNL DOI 10.1016/J.JBC.2023.104927 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 31086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1950 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1747 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2646 ; 1.512 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4058 ; 1.356 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ;14.562 ; 5.305 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;31.138 ;23.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;13.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.011 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 247 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2337 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 426 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3697 ; 1.698 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7XLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300029096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4GRW, 3VTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3,350 0.1 M HEPES (PH 7.5), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.71000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 476 REMARK 465 LEU A 477 REMARK 465 GLN A 478 REMARK 465 LYS A 479 REMARK 465 LEU A 480 REMARK 465 LEU A 481 REMARK 465 ALA A 482 REMARK 465 PRO A 483 REMARK 465 TYR A 484 REMARK 465 HIS A 485 REMARK 465 LYS A 486 REMARK 465 ALA A 487 REMARK 465 LYS A 488 REMARK 465 THR A 489 REMARK 465 LEU A 490 REMARK 465 GLU A 491 REMARK 465 ARG A 492 REMARK 465 GLN A 493 REMARK 465 VAL A 494 REMARK 465 TYR A 495 REMARK 465 GLU A 496 REMARK 465 LEU A 497 REMARK 465 GLU A 498 REMARK 465 LYS A 499 REMARK 465 LEU A 500 REMARK 465 GLN A 501 REMARK 465 GLU A 502 REMARK 465 LYS A 503 REMARK 465 LEU A 504 REMARK 465 PRO A 505 REMARK 465 GLU A 506 REMARK 465 LYS A 507 REMARK 465 TYR A 508 REMARK 465 LYS A 509 REMARK 465 ALA A 510 REMARK 465 GLU A 511 REMARK 465 TYR A 512 REMARK 465 LYS A 513 REMARK 465 LYS A 514 REMARK 465 LYS A 515 REMARK 465 LEU A 516 REMARK 465 ASP A 517 REMARK 465 GLN A 518 REMARK 465 THR A 519 REMARK 465 ARG A 520 REMARK 465 VAL A 521 REMARK 465 GLU A 522 REMARK 465 LEU A 523 REMARK 465 ALA A 524 REMARK 465 ASP A 525 REMARK 465 GLN A 526 REMARK 465 VAL A 527 REMARK 465 LYS A 528 REMARK 465 SER A 529 REMARK 465 ALA A 530 REMARK 465 VAL A 531 REMARK 465 THR A 532 REMARK 465 GLU A 533 REMARK 465 PHE A 534 REMARK 465 GLU A 535 REMARK 465 ASN A 536 REMARK 465 VAL A 537 REMARK 465 THR A 538 REMARK 465 PRO A 539 REMARK 465 THR A 540 REMARK 465 ASN A 541 REMARK 465 ASP A 542 REMARK 465 GLN A 543 REMARK 465 ASN A 656 REMARK 465 THR A 657 REMARK 465 LYS A 658 REMARK 465 ASP A 659 REMARK 465 ASP A 660 REMARK 465 ALA B 126 REMARK 465 ALA B 127 REMARK 465 GLY B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 593 14.48 -57.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 415 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 416 DISTANCE = 7.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 556 OE1 REMARK 620 2 SER A 561 OG 83.6 REMARK 620 3 GLU A 562 O 111.0 99.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 102 OD2 REMARK 620 2 GLY B 111 O 86.5 REMARK 620 3 ASP B 113 OD1 94.0 86.0 REMARK 620 N 1 2 DBREF 7XLD A 476 660 UNP Q931P4 ISDH_STAAM 476 660 DBREF 7XLD B 1 134 PDB 7XLD 7XLD 1 134 SEQRES 1 A 185 ASN LEU GLN LYS LEU LEU ALA PRO TYR HIS LYS ALA LYS SEQRES 2 A 185 THR LEU GLU ARG GLN VAL TYR GLU LEU GLU LYS LEU GLN SEQRES 3 A 185 GLU LYS LEU PRO GLU LYS TYR LYS ALA GLU TYR LYS LYS SEQRES 4 A 185 LYS LEU ASP GLN THR ARG VAL GLU LEU ALA ASP GLN VAL SEQRES 5 A 185 LYS SER ALA VAL THR GLU PHE GLU ASN VAL THR PRO THR SEQRES 6 A 185 ASN ASP GLN LEU THR ASP LEU GLN GLU ALA HIS PHE VAL SEQRES 7 A 185 VAL PHE GLU SER GLU GLU ASN SER GLU SER VAL MET ASP SEQRES 8 A 185 GLY PHE VAL GLU HIS PRO PHE TYR THR ALA THR LEU ASN SEQRES 9 A 185 GLY GLN LYS TYR VAL VAL MET LYS THR LYS ASP ASP SER SEQRES 10 A 185 TYR TRP LYS ASP LEU ILE VAL GLU GLY LYS ARG VAL THR SEQRES 11 A 185 THR VAL SER LYS ASP PRO LYS ASN ASN SER ARG THR LEU SEQRES 12 A 185 ILE PHE PRO TYR ILE PRO ASP LYS ALA VAL TYR ASN ALA SEQRES 13 A 185 ILE VAL LYS VAL VAL VAL ALA ASN ILE GLY TYR GLU GLY SEQRES 14 A 185 GLN TYR HIS VAL ARG ILE ILE ASN GLN ASP ILE ASN THR SEQRES 15 A 185 LYS ASP ASP SEQRES 1 B 134 GLU LEU GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 134 PRO GLY GLY SER LEU SER LEU SER CYS GLU VAL SER GLY SEQRES 3 B 134 PHE SER PHE ASP ASP VAL ASP ASN PHE ILE ILE ALA TRP SEQRES 4 B 134 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SER SEQRES 5 B 134 PHE LEU ARG LYS TYR ASP MET SER THR TYR TYR ALA GLU SEQRES 6 B 134 SER VAL LYS GLY ARG PHE THR ILE SER SER ASP ASN ALA SEQRES 7 B 134 ARG ASP THR VAL TYR LEU GLN MET THR ASN LEU LYS PRO SEQRES 8 B 134 GLU ASP THR ALA VAL TYR TYR CYS ALA LEU ASP ARG GLU SEQRES 9 B 134 GLY PHE VAL PHE GLU GLN GLY MET ASP PHE TRP GLY LYS SEQRES 10 B 134 GLY THR GLN VAL THR VAL SER SER ALA ALA GLY HIS HIS SEQRES 11 B 134 HIS HIS HIS HIS HET NA A 701 1 HET MG B 201 1 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 3 NA NA 1+ FORMUL 4 MG MG 2+ FORMUL 5 HOH *199(H2 O) HELIX 1 AA1 SER A 563 VAL A 569 5 7 HELIX 2 AA2 ASP A 590 TRP A 594 5 5 HELIX 3 AA3 PRO A 611 ASN A 614 5 4 HELIX 4 AA4 ALA A 638 GLY A 641 5 4 HELIX 5 AA5 ASN B 77 ARG B 79 5 3 HELIX 6 AA6 LYS B 90 THR B 94 5 5 HELIX 7 AA7 PHE B 108 MET B 112 5 5 SHEET 1 AA1 5 THR A 545 ALA A 550 0 SHEET 2 AA1 5 PHE A 573 LEU A 578 -1 O THR A 577 N THR A 545 SHEET 3 AA1 5 GLN A 581 LYS A 587 -1 O VAL A 585 N TYR A 574 SHEET 4 AA1 5 SER A 615 PRO A 621 -1 O PHE A 620 N VAL A 584 SHEET 5 AA1 5 THR A 605 ASP A 610 -1 N ASP A 610 O SER A 615 SHEET 1 AA2 5 PHE A 552 GLU A 556 0 SHEET 2 AA2 5 TYR A 642 ASN A 652 -1 O ARG A 649 N PHE A 555 SHEET 3 AA2 5 VAL A 628 VAL A 637 -1 N VAL A 635 O GLY A 644 SHEET 4 AA2 5 LYS A 595 VAL A 599 -1 N ILE A 598 O ILE A 632 SHEET 5 AA2 5 LYS A 602 ARG A 603 -1 O LYS A 602 N VAL A 599 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AA3 4 THR B 81 MET B 86 -1 O MET B 86 N LEU B 18 SHEET 4 AA3 4 PHE B 71 ASP B 76 -1 N SER B 74 O TYR B 83 SHEET 1 AA4 6 GLY B 10 VAL B 12 0 SHEET 2 AA4 6 THR B 119 VAL B 123 1 O THR B 122 N GLY B 10 SHEET 3 AA4 6 ALA B 95 ASP B 102 -1 N TYR B 97 O THR B 119 SHEET 4 AA4 6 ILE B 36 GLN B 42 -1 N PHE B 40 O TYR B 98 SHEET 5 AA4 6 GLU B 49 ARG B 55 -1 O SER B 52 N TRP B 39 SHEET 6 AA4 6 SER B 60 TYR B 63 -1 O SER B 60 N ARG B 55 SHEET 1 AA5 4 GLY B 10 VAL B 12 0 SHEET 2 AA5 4 THR B 119 VAL B 123 1 O THR B 122 N GLY B 10 SHEET 3 AA5 4 ALA B 95 ASP B 102 -1 N TYR B 97 O THR B 119 SHEET 4 AA5 4 PHE B 114 TRP B 115 -1 O PHE B 114 N LEU B 101 SSBOND 1 CYS B 22 CYS B 99 1555 1555 2.02 LINK OE1 GLU A 556 NA NA A 701 1555 1555 2.43 LINK OG SER A 561 NA NA A 701 1555 1555 3.04 LINK O GLU A 562 NA NA A 701 1555 1555 2.57 LINK OD2 ASP B 102 MG MG B 201 1555 1555 2.43 LINK O GLY B 111 MG MG B 201 1555 1555 2.26 LINK OD1 ASP B 113 MG MG B 201 1555 1555 2.31 CISPEP 1 HIS A 571 PRO A 572 0 -2.71 CRYST1 53.130 49.420 53.940 90.00 99.54 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018822 0.000000 0.003163 0.00000 SCALE2 0.000000 0.020235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018799 0.00000