HEADER TRANSFERASE 05-MAY-22 7XPT TITLE CRYSTAL STRUCTRUE OF MTDL:GDP:MN SOAKED WITH GDP-GLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSGLYCOSYLSE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINACTINOSPORA THERMOTOLERANS; SOURCE 3 ORGANISM_TAXID: 531310; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.D.LI,C.HE REVDAT 2 29-NOV-23 7XPT 1 REMARK REVDAT 1 29-MAR-23 7XPT 0 JRNL AUTH X.DU,X.CHU,N.LIU,X.JIA,H.PENG,Y.XIAO,L.LIU,H.YU,F.LI,C.HE JRNL TITL STRUCTURES OF THE NDP-PYRANOSE MUTASE BELONGING TO JRNL TITL 2 GLYCOSYLTRANSFERASE FAMILY 75 REVEAL RESIDUES IMPORTANT FOR JRNL TITL 3 MN 2+ COORDINATION AND SUBSTRATE BINDING. JRNL REF J.BIOL.CHEM. V. 299 02903 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36642179 JRNL DOI 10.1016/J.JBC.2023.102903 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 54968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.7000 - 5.4300 0.99 2990 143 0.1937 0.2242 REMARK 3 2 5.4300 - 4.3100 0.99 2904 158 0.1788 0.2116 REMARK 3 3 4.3100 - 3.7600 0.99 2880 177 0.1762 0.2078 REMARK 3 4 3.7600 - 3.4200 0.98 2873 139 0.1937 0.2478 REMARK 3 5 3.4200 - 3.1700 0.98 2845 180 0.2198 0.2407 REMARK 3 6 3.1700 - 2.9900 0.99 2857 183 0.2210 0.2776 REMARK 3 7 2.9900 - 2.8400 0.99 2860 175 0.2403 0.2836 REMARK 3 8 2.8400 - 2.7100 0.98 2885 129 0.2377 0.3329 REMARK 3 9 2.7100 - 2.6100 0.52 1531 80 0.2552 0.2669 REMARK 3 10 2.6100 - 2.5200 0.99 2887 140 0.2492 0.2720 REMARK 3 11 2.5200 - 2.4400 0.98 2865 151 0.2551 0.3212 REMARK 3 12 2.4400 - 2.3700 0.99 2878 152 0.2339 0.2974 REMARK 3 13 2.3700 - 2.3100 0.98 2847 165 0.2412 0.3358 REMARK 3 14 2.3100 - 2.2600 0.96 2291 116 0.2802 0.3433 REMARK 3 15 2.2400 - 2.2000 0.94 2100 103 0.2753 0.3528 REMARK 3 16 2.2000 - 2.1500 0.99 2874 132 0.2672 0.3224 REMARK 3 17 2.1500 - 2.1100 0.99 2924 137 0.2600 0.3180 REMARK 3 18 2.1100 - 2.0800 0.97 1944 93 0.2822 0.3797 REMARK 3 19 2.0500 - 2.0300 0.89 1117 53 0.3264 0.3540 REMARK 3 20 2.0300 - 2.0000 0.99 2860 150 0.2876 0.3635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1749 38.7447 2.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.4618 REMARK 3 T33: 0.2095 T12: 0.0008 REMARK 3 T13: 0.0255 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.7253 L22: 3.0490 REMARK 3 L33: 2.7140 L12: 0.1730 REMARK 3 L13: -0.0809 L23: -0.9134 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.4287 S13: 0.0300 REMARK 3 S21: -0.4384 S22: 0.0579 S23: -0.0434 REMARK 3 S31: 0.0138 S32: -0.0093 S33: -0.1080 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0823 48.2705 22.5791 REMARK 3 T TENSOR REMARK 3 T11: 0.1991 T22: 0.3520 REMARK 3 T33: 0.2364 T12: -0.0349 REMARK 3 T13: 0.0096 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.4288 L22: 1.3314 REMARK 3 L33: 0.6778 L12: -0.0304 REMARK 3 L13: -0.0867 L23: -0.2469 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.1063 S13: 0.2339 REMARK 3 S21: -0.0053 S22: 0.0318 S23: -0.0292 REMARK 3 S31: -0.1253 S32: -0.0113 S33: -0.0274 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9722 30.2973 28.4689 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.3923 REMARK 3 T33: 0.3203 T12: 0.0333 REMARK 3 T13: -0.0556 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.5646 L22: 1.9109 REMARK 3 L33: 3.8492 L12: 1.4417 REMARK 3 L13: -1.5491 L23: -0.5954 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.1462 S13: -0.1836 REMARK 3 S21: -0.0044 S22: 0.0035 S23: -0.1714 REMARK 3 S31: 0.1355 S32: 0.2993 S33: -0.0412 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5758 46.5469 4.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.5804 REMARK 3 T33: 0.2580 T12: -0.0326 REMARK 3 T13: 0.0085 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.5452 L22: 2.9581 REMARK 3 L33: 2.7399 L12: -0.8713 REMARK 3 L13: 0.7272 L23: 0.4663 REMARK 3 S TENSOR REMARK 3 S11: -0.5637 S12: 0.4504 S13: -0.2704 REMARK 3 S21: -0.4662 S22: 0.3665 S23: 0.4555 REMARK 3 S31: 0.3239 S32: -0.5480 S33: 0.2413 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.3886 50.6053 0.7145 REMARK 3 T TENSOR REMARK 3 T11: 0.3747 T22: 0.4844 REMARK 3 T33: 0.2311 T12: 0.0225 REMARK 3 T13: -0.0122 T23: -0.0885 REMARK 3 L TENSOR REMARK 3 L11: 4.5878 L22: 6.8084 REMARK 3 L33: 2.9855 L12: 1.0075 REMARK 3 L13: -0.9666 L23: 0.2336 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.5901 S13: -0.4061 REMARK 3 S21: -0.5175 S22: 0.0690 S23: -0.3651 REMARK 3 S31: 0.4361 S32: 0.1011 S33: -0.0613 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.7275 58.9209 -2.7273 REMARK 3 T TENSOR REMARK 3 T11: 0.4634 T22: 0.6550 REMARK 3 T33: 0.2675 T12: -0.1174 REMARK 3 T13: -0.0670 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.7882 L22: 6.4354 REMARK 3 L33: 3.3474 L12: -0.3798 REMARK 3 L13: -0.6541 L23: 2.2106 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: 0.6718 S13: 0.0726 REMARK 3 S21: -1.0536 S22: -0.2234 S23: 0.1974 REMARK 3 S31: -0.4067 S32: -0.2086 S33: 0.3476 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1526 63.5513 10.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.3828 REMARK 3 T33: 0.3263 T12: -0.0192 REMARK 3 T13: 0.0103 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 1.4076 L22: 7.1827 REMARK 3 L33: 4.5373 L12: -0.9779 REMARK 3 L13: 0.9337 L23: 1.9734 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 0.2295 S13: 0.5135 REMARK 3 S21: -0.4884 S22: -0.1560 S23: -0.1373 REMARK 3 S31: -0.3678 S32: -0.1702 S33: 0.1434 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0981 41.0498 17.0426 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.3576 REMARK 3 T33: 0.4675 T12: -0.0329 REMARK 3 T13: -0.0116 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 2.5177 L22: 1.5175 REMARK 3 L33: 3.1151 L12: 0.6200 REMARK 3 L13: 0.2543 L23: -0.6697 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.1671 S13: -0.4500 REMARK 3 S21: -0.1629 S22: 0.0663 S23: 0.0223 REMARK 3 S31: 0.3218 S32: -0.0336 S33: -0.0726 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8668 47.0278 23.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.2182 T22: 0.3618 REMARK 3 T33: 0.3453 T12: -0.0324 REMARK 3 T13: -0.0350 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.0899 L22: 2.0662 REMARK 3 L33: 0.7409 L12: -0.1239 REMARK 3 L13: 0.2484 L23: 0.5434 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.0112 S13: -0.2955 REMARK 3 S21: -0.0072 S22: 0.0708 S23: -0.0752 REMARK 3 S31: 0.0935 S32: 0.0130 S33: -0.0743 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4785 56.4458 30.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.2259 REMARK 3 T33: 0.2183 T12: -0.0206 REMARK 3 T13: -0.0606 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 5.7987 L22: 3.3853 REMARK 3 L33: 4.8502 L12: -1.4792 REMARK 3 L13: -1.1515 L23: 2.1892 REMARK 3 S TENSOR REMARK 3 S11: 0.3133 S12: -0.3039 S13: 0.2856 REMARK 3 S21: 0.1711 S22: 0.1266 S23: -0.1834 REMARK 3 S31: 0.1260 S32: 0.0422 S33: -0.4233 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7646 61.9627 30.6015 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.6093 REMARK 3 T33: 0.3968 T12: 0.0290 REMARK 3 T13: 0.0151 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 8.4045 L22: 4.8321 REMARK 3 L33: 2.6517 L12: 5.1989 REMARK 3 L13: 3.4752 L23: 3.1010 REMARK 3 S TENSOR REMARK 3 S11: 0.1973 S12: -0.7044 S13: 0.1776 REMARK 3 S21: 0.1270 S22: -0.2780 S23: 0.4734 REMARK 3 S31: -0.0619 S32: -0.9814 S33: 0.0935 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9689 66.6137 26.6228 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.2830 REMARK 3 T33: 0.2009 T12: 0.0003 REMARK 3 T13: 0.0499 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.1374 L22: 3.7626 REMARK 3 L33: 7.2341 L12: 0.6119 REMARK 3 L13: 1.7528 L23: 0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.2293 S13: 0.0799 REMARK 3 S21: -0.0379 S22: 0.0625 S23: -0.0176 REMARK 3 S31: -0.2410 S32: -0.0927 S33: -0.0817 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55455 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 80.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7XPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE PH 5.6, 10% REMARK 280 (W/V) PEG 4000, 10% (W/V) ISOPROPANOL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.13750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.41250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.13750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.41250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -6.84930 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.69688 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -81.13750 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -49.41250 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 74.28820 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -49.41250 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 57.69688 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 375 REMARK 465 THR A 376 REMARK 465 GLY B 375 REMARK 465 THR B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 118 31.73 -96.57 REMARK 500 ASN A 230 58.99 -161.52 REMARK 500 ASP B 118 31.91 -87.16 REMARK 500 ASN B 230 60.14 -160.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 777 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 733 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 734 DISTANCE = 7.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD1 REMARK 620 2 ASP A 111 OD2 55.4 REMARK 620 3 HIS A 287 NE2 98.3 91.9 REMARK 620 4 GDG A 401 O14 85.8 85.3 172.5 REMARK 620 5 GDG A 401 O19 168.1 119.1 92.3 83.1 REMARK 620 6 HOH A 510 O 90.5 145.5 88.5 97.7 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 111 OD1 REMARK 620 2 ASP B 111 OD2 54.2 REMARK 620 3 HIS B 287 NE2 101.6 99.2 REMARK 620 4 GDG B 401 O14 84.3 79.4 171.7 REMARK 620 5 GDG B 401 O19 165.1 122.6 93.3 80.8 REMARK 620 6 HOH B 520 O 86.1 139.9 93.7 92.5 94.1 REMARK 620 N 1 2 3 4 5 DBREF 7XPT A 1 376 UNP G8HX37 G8HX37_9ACTN 1 376 DBREF 7XPT B 1 376 UNP G8HX37 G8HX37_9ACTN 1 376 SEQADV 7XPT HIS A 0 UNP G8HX37 EXPRESSION TAG SEQADV 7XPT HIS B 0 UNP G8HX37 EXPRESSION TAG SEQRES 1 A 377 HIS MET SER GLY ARG ASP ILE SER THR ALA VAL VAL VAL SEQRES 2 A 377 THR THR ILE SER ASP GLY GLY PHE LEU ASP ARG LEU ALA SEQRES 3 A 377 PRO ALA LEU ARG ASP ALA GLY ALA ARG LEU ILE VAL ILE SEQRES 4 A 377 PRO ASP ARG ASN THR GLY PRO ALA LEU PHE ALA ALA CYS SEQRES 5 A 377 GLU ARG HIS ARG ARG LEU GLY LEU ASP VAL VAL CYS PRO SEQRES 6 A 377 SER VAL ALA GLU GLN GLN ASP LEU LEU GLU ARG LEU ALA SEQRES 7 A 377 VAL PRO ASP LEU ILE PRO TYR HIS SER ASP ASN ARG ARG SEQRES 8 A 377 ASN VAL GLY TYR LEU MET ALA TRP MET GLU GLY PHE ASP SEQRES 9 A 377 VAL ILE VAL SER MET ASP ASP ASP ASN LEU PRO THR THR SEQRES 10 A 377 ASP ASP PHE VAL GLU ARG HIS GLN VAL VAL CYS GLN GLY SEQRES 11 A 377 PRO ARG THR GLN PRO VAL THR ALA SER SER ASP GLY TRP SEQRES 12 A 377 PHE ASN ASN CYS ALA LEU LEU GLU VAL GLU PRO THR GLU SEQRES 13 A 377 VAL PHE PRO ARG GLY PHE PRO PHE HIS ALA ARG PRO ALA SEQRES 14 A 377 HIS ALA GLN ALA ARG THR SER VAL CYS GLU ARG PRO ALA SEQRES 15 A 377 ASP VAL ARG ILE ASN ALA GLY LEU TRP LEU GLY ASP PRO SEQRES 16 A 377 ASP VAL ASP ALA ILE THR ARG LEU ALA VAL ARG PRO ASN SEQRES 17 A 377 ALA LEU ALA HIS SER GLY GLY SER VAL VAL LEU ALA GLU SEQRES 18 A 377 GLY THR TRP CYS PRO VAL ASN SER GLN ASN THR ALA VAL SEQRES 19 A 377 HIS ARG ASP ALA LEU PRO ALA TYR TYR PHE LEU ARG MET SEQRES 20 A 377 GLY GLN PRO VAL ASP GLY VAL PRO MET GLU ARG PHE GLY SEQRES 21 A 377 ASP ILE PHE SER GLY TYR PHE VAL GLN VAL CYS ALA GLN SEQRES 22 A 377 HIS LEU GLY HIS ALA VAL ARG PHE GLY ASP PRO VAL VAL SEQRES 23 A 377 GLU HIS PRO ARG ASN GLU HIS ASP LEU LEU ASP ASP LEU SEQRES 24 A 377 HIS LYS GLU VAL PRO ALA VAL ARG LEU LEU ASP ASP ILE SEQRES 25 A 377 LEU ASP HIS LEU ARG ASP HIS PRO LEU GLU GLY GLY ASP SEQRES 26 A 377 TYR LEU GLU THR TYR GLU SER LEU SER TYR ALA LEU GLN SEQRES 27 A 377 GLU ILE ALA GLU ARG VAL ASN GLY ARG ALA TRP SER PRO SEQRES 28 A 377 ASP ALA ARG ALA PHE LEU HIS ARG SER ALA HIS LEU MET SEQRES 29 A 377 ARG SER TRP THR GLY ALA LEU ARG THR VAL ALA GLY THR SEQRES 1 B 377 HIS MET SER GLY ARG ASP ILE SER THR ALA VAL VAL VAL SEQRES 2 B 377 THR THR ILE SER ASP GLY GLY PHE LEU ASP ARG LEU ALA SEQRES 3 B 377 PRO ALA LEU ARG ASP ALA GLY ALA ARG LEU ILE VAL ILE SEQRES 4 B 377 PRO ASP ARG ASN THR GLY PRO ALA LEU PHE ALA ALA CYS SEQRES 5 B 377 GLU ARG HIS ARG ARG LEU GLY LEU ASP VAL VAL CYS PRO SEQRES 6 B 377 SER VAL ALA GLU GLN GLN ASP LEU LEU GLU ARG LEU ALA SEQRES 7 B 377 VAL PRO ASP LEU ILE PRO TYR HIS SER ASP ASN ARG ARG SEQRES 8 B 377 ASN VAL GLY TYR LEU MET ALA TRP MET GLU GLY PHE ASP SEQRES 9 B 377 VAL ILE VAL SER MET ASP ASP ASP ASN LEU PRO THR THR SEQRES 10 B 377 ASP ASP PHE VAL GLU ARG HIS GLN VAL VAL CYS GLN GLY SEQRES 11 B 377 PRO ARG THR GLN PRO VAL THR ALA SER SER ASP GLY TRP SEQRES 12 B 377 PHE ASN ASN CYS ALA LEU LEU GLU VAL GLU PRO THR GLU SEQRES 13 B 377 VAL PHE PRO ARG GLY PHE PRO PHE HIS ALA ARG PRO ALA SEQRES 14 B 377 HIS ALA GLN ALA ARG THR SER VAL CYS GLU ARG PRO ALA SEQRES 15 B 377 ASP VAL ARG ILE ASN ALA GLY LEU TRP LEU GLY ASP PRO SEQRES 16 B 377 ASP VAL ASP ALA ILE THR ARG LEU ALA VAL ARG PRO ASN SEQRES 17 B 377 ALA LEU ALA HIS SER GLY GLY SER VAL VAL LEU ALA GLU SEQRES 18 B 377 GLY THR TRP CYS PRO VAL ASN SER GLN ASN THR ALA VAL SEQRES 19 B 377 HIS ARG ASP ALA LEU PRO ALA TYR TYR PHE LEU ARG MET SEQRES 20 B 377 GLY GLN PRO VAL ASP GLY VAL PRO MET GLU ARG PHE GLY SEQRES 21 B 377 ASP ILE PHE SER GLY TYR PHE VAL GLN VAL CYS ALA GLN SEQRES 22 B 377 HIS LEU GLY HIS ALA VAL ARG PHE GLY ASP PRO VAL VAL SEQRES 23 B 377 GLU HIS PRO ARG ASN GLU HIS ASP LEU LEU ASP ASP LEU SEQRES 24 B 377 HIS LYS GLU VAL PRO ALA VAL ARG LEU LEU ASP ASP ILE SEQRES 25 B 377 LEU ASP HIS LEU ARG ASP HIS PRO LEU GLU GLY GLY ASP SEQRES 26 B 377 TYR LEU GLU THR TYR GLU SER LEU SER TYR ALA LEU GLN SEQRES 27 B 377 GLU ILE ALA GLU ARG VAL ASN GLY ARG ALA TRP SER PRO SEQRES 28 B 377 ASP ALA ARG ALA PHE LEU HIS ARG SER ALA HIS LEU MET SEQRES 29 B 377 ARG SER TRP THR GLY ALA LEU ARG THR VAL ALA GLY THR HET GDG A 401 39 HET MN A 402 1 HET GDG B 401 39 HET MN B 402 1 HETNAM GDG GDP-ALPHA-D-GLUCOSE HETNAM MN MANGANESE (II) ION HETSYN GDG GDP-ALPHA-D-GLUCOSE FORMUL 3 GDG 2(C16 H25 N5 O16 P2) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *511(H2 O) HELIX 1 AA1 PHE A 20 ALA A 31 1 12 HELIX 2 AA2 PRO A 45 LEU A 57 1 13 HELIX 3 AA3 SER A 65 LEU A 76 1 12 HELIX 4 AA4 SER A 86 ASN A 88 5 3 HELIX 5 AA5 ARG A 89 GLU A 100 1 12 HELIX 6 AA6 ASP A 118 GLN A 124 1 7 HELIX 7 AA7 VAL A 125 GLN A 128 5 4 HELIX 8 AA8 ASN A 144 ALA A 147 5 4 HELIX 9 AA9 ARG A 166 ALA A 172 5 7 HELIX 10 AB1 ASP A 197 ARG A 205 1 9 HELIX 11 AB2 ALA A 237 TYR A 241 5 5 HELIX 12 AB3 PHE A 258 LEU A 274 1 17 HELIX 13 AB4 ASP A 293 ARG A 316 1 24 HELIX 14 AB5 ASP A 324 VAL A 343 1 20 HELIX 15 AB6 SER A 349 ALA A 374 1 26 HELIX 16 AB7 PHE B 20 GLY B 32 1 13 HELIX 17 AB8 PRO B 45 ARG B 56 1 12 HELIX 18 AB9 SER B 65 LEU B 76 1 12 HELIX 19 AC1 SER B 86 ASN B 88 5 3 HELIX 20 AC2 ARG B 89 GLU B 100 1 12 HELIX 21 AC3 ASP B 118 GLN B 124 1 7 HELIX 22 AC4 VAL B 125 GLN B 128 5 4 HELIX 23 AC5 ASN B 144 ALA B 147 5 4 HELIX 24 AC6 ALA B 165 ALA B 170 1 6 HELIX 25 AC7 ASP B 197 ARG B 205 1 9 HELIX 26 AC8 ALA B 237 TYR B 241 5 5 HELIX 27 AC9 PHE B 258 LEU B 274 1 17 HELIX 28 AD1 ASP B 293 ARG B 316 1 24 HELIX 29 AD2 ASP B 324 VAL B 343 1 20 HELIX 30 AD3 SER B 349 ALA B 374 1 26 SHEET 1 AA1 8 ASP A 60 VAL A 62 0 SHEET 2 AA1 8 ARG A 34 ILE A 38 1 N VAL A 37 O VAL A 62 SHEET 3 AA1 8 THR A 8 THR A 13 1 N VAL A 10 O ILE A 36 SHEET 4 AA1 8 VAL A 104 MET A 108 1 O VAL A 106 N VAL A 11 SHEET 5 AA1 8 ASN A 230 HIS A 234 -1 O THR A 231 N SER A 107 SHEET 6 AA1 8 THR A 174 GLY A 192 -1 N GLY A 188 O ASN A 230 SHEET 7 AA1 8 HIS A 276 HIS A 287 1 O VAL A 285 N LEU A 191 SHEET 8 AA1 8 ARG A 131 SER A 138 0 SHEET 1 AA2 4 LEU A 113 PRO A 114 0 SHEET 2 AA2 4 HIS A 276 HIS A 287 -1 O GLU A 286 N LEU A 113 SHEET 3 AA2 4 THR A 174 GLY A 192 1 N LEU A 191 O VAL A 285 SHEET 4 AA2 4 VAL A 216 VAL A 217 0 SHEET 1 AA3 2 LEU A 149 GLU A 152 0 SHEET 2 AA3 2 ASN A 207 HIS A 211 -1 O LEU A 209 N GLU A 150 SHEET 1 AA4 2 PRO A 249 VAL A 250 0 SHEET 2 AA4 2 VAL A 253 PRO A 254 -1 O VAL A 253 N VAL A 250 SHEET 1 AA5 8 ASP B 60 VAL B 62 0 SHEET 2 AA5 8 ARG B 34 ILE B 38 1 N VAL B 37 O VAL B 62 SHEET 3 AA5 8 THR B 8 THR B 13 1 N VAL B 10 O ARG B 34 SHEET 4 AA5 8 VAL B 104 MET B 108 1 O VAL B 106 N VAL B 11 SHEET 5 AA5 8 ASN B 230 HIS B 234 -1 O THR B 231 N SER B 107 SHEET 6 AA5 8 VAL B 183 GLY B 192 -1 N ASN B 186 O ALA B 232 SHEET 7 AA5 8 ALA B 277 HIS B 287 1 O ARG B 279 N ALA B 187 SHEET 8 AA5 8 LEU B 113 PRO B 114 -1 N LEU B 113 O GLU B 286 SHEET 1 AA6 8 ASP B 60 VAL B 62 0 SHEET 2 AA6 8 ARG B 34 ILE B 38 1 N VAL B 37 O VAL B 62 SHEET 3 AA6 8 THR B 8 THR B 13 1 N VAL B 10 O ARG B 34 SHEET 4 AA6 8 VAL B 104 MET B 108 1 O VAL B 106 N VAL B 11 SHEET 5 AA6 8 ASN B 230 HIS B 234 -1 O THR B 231 N SER B 107 SHEET 6 AA6 8 VAL B 183 GLY B 192 -1 N ASN B 186 O ALA B 232 SHEET 7 AA6 8 ALA B 277 HIS B 287 1 O ARG B 279 N ALA B 187 SHEET 8 AA6 8 VAL B 216 VAL B 217 -1 N VAL B 216 O PHE B 280 SHEET 1 AA7 2 ARG B 131 SER B 138 0 SHEET 2 AA7 2 THR B 174 ALA B 181 -1 O SER B 175 N ALA B 137 SHEET 1 AA8 2 LEU B 149 GLU B 152 0 SHEET 2 AA8 2 ASN B 207 HIS B 211 -1 O LEU B 209 N GLU B 150 SHEET 1 AA9 2 PRO B 249 VAL B 250 0 SHEET 2 AA9 2 VAL B 253 PRO B 254 -1 O VAL B 253 N VAL B 250 LINK OD1 ASP A 111 MN MN A 402 1555 1555 2.45 LINK OD2 ASP A 111 MN MN A 402 1555 1555 2.27 LINK NE2 HIS A 287 MN MN A 402 1555 1555 2.35 LINK O14 GDG A 401 MN MN A 402 1555 1555 2.07 LINK O19 GDG A 401 MN MN A 402 1555 1555 2.30 LINK MN MN A 402 O HOH A 510 1555 1555 2.29 LINK OD1 ASP B 111 MN MN B 402 1555 1555 2.49 LINK OD2 ASP B 111 MN MN B 402 1555 1555 2.30 LINK NE2 HIS B 287 MN MN B 402 1555 1555 2.27 LINK O14 GDG B 401 MN MN B 402 1555 1555 2.23 LINK O19 GDG B 401 MN MN B 402 1555 1555 2.29 LINK MN MN B 402 O HOH B 520 1555 1555 2.27 CISPEP 1 GLU A 152 PRO A 153 0 2.23 CISPEP 2 ASP A 282 PRO A 283 0 -0.10 CISPEP 3 GLU B 152 PRO B 153 0 1.07 CISPEP 4 ASP B 282 PRO B 283 0 -1.76 CRYST1 162.275 98.825 58.102 90.00 96.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006162 0.000000 0.000732 0.00000 SCALE2 0.000000 0.010119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017332 0.00000