HEADER LIGASE 15-MAY-22 7XT2 TITLE CRYSTAL STRUCTURE OF TRIM72 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 72; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: MITSUGUMIN-53,MG53,TRIM72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM72, MG53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIM72, MG53, B-BOX, CC, SPRY, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHOU,Y.M.MA,L.DING REVDAT 3 08-MAY-24 7XT2 1 JRNL REVDAT 2 29-NOV-23 7XT2 1 REMARK REVDAT 1 29-MAR-23 7XT2 0 JRNL AUTH Y.MA,L.DING,Z.LI,C.ZHOU JRNL TITL STRUCTURAL BASIS FOR TRIM72 OLIGOMERIZATION DURING MEMBRANE JRNL TITL 2 DAMAGE REPAIR. JRNL REF NAT COMMUN V. 14 1555 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36944613 JRNL DOI 10.1038/S41467-023-37198-1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC1_4392 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 60046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.590 REMARK 3 FREE R VALUE TEST SET COUNT : 2758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1400 - 8.1300 0.95 2762 149 0.1352 0.1777 REMARK 3 2 8.1200 - 6.4600 0.97 2772 214 0.1969 0.2277 REMARK 3 3 6.4600 - 5.6400 0.98 2819 180 0.2149 0.2515 REMARK 3 4 5.6400 - 5.1300 0.99 2954 84 0.2128 0.2485 REMARK 3 5 5.1300 - 4.7600 0.99 2932 136 0.1738 0.2355 REMARK 3 6 4.7600 - 4.4800 0.97 2774 148 0.1883 0.1995 REMARK 3 7 4.4800 - 4.2600 0.97 2795 170 0.1938 0.2571 REMARK 3 8 4.2600 - 4.0700 0.99 2920 162 0.2120 0.2203 REMARK 3 9 4.0700 - 3.9100 0.99 2921 143 0.2223 0.2570 REMARK 3 10 3.9100 - 3.7800 0.98 2851 161 0.2603 0.3072 REMARK 3 11 3.7800 - 3.6600 0.97 2923 88 0.2620 0.2873 REMARK 3 12 3.6600 - 3.5600 0.99 2930 107 0.2759 0.3911 REMARK 3 13 3.5600 - 3.4600 0.98 2842 108 0.3061 0.3970 REMARK 3 14 3.4600 - 3.3800 0.93 2816 125 0.3470 0.3996 REMARK 3 15 3.3800 - 3.3000 0.98 2780 137 0.3499 0.3615 REMARK 3 16 3.3000 - 3.2300 0.98 2991 133 0.3695 0.4153 REMARK 3 17 3.2300 - 3.1700 0.99 2885 95 0.3877 0.4019 REMARK 3 18 3.1700 - 3.1100 0.99 2945 148 0.4035 0.4292 REMARK 3 19 3.1100 - 3.0500 0.98 2833 160 0.4330 0.4634 REMARK 3 20 3.0500 - 3.0000 0.97 2843 110 0.4344 0.4873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 140.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN B AND RESID 84:254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.322 -23.137 129.819 REMARK 3 T TENSOR REMARK 3 T11: 1.4153 T22: 0.5261 REMARK 3 T33: 0.9393 T12: -0.2793 REMARK 3 T13: -0.0284 T23: 0.0910 REMARK 3 L TENSOR REMARK 3 L11: 0.9477 L22: 0.1614 REMARK 3 L33: 1.2739 L12: -0.0341 REMARK 3 L13: 0.6917 L23: 0.3771 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.2207 S13: -0.1847 REMARK 3 S21: 0.3058 S22: -0.0942 S23: -0.1226 REMARK 3 S31: 1.7874 S32: -1.6644 S33: 0.1500 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 255:284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.247 -5.662 100.673 REMARK 3 T TENSOR REMARK 3 T11: 0.8256 T22: 1.1317 REMARK 3 T33: 0.8876 T12: 0.0568 REMARK 3 T13: -0.0991 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.1035 L22: 1.3932 REMARK 3 L33: 6.1066 L12: -1.2742 REMARK 3 L13: -2.6385 L23: 2.7666 REMARK 3 S TENSOR REMARK 3 S11: 0.5117 S12: 0.1645 S13: 0.1653 REMARK 3 S21: -0.5817 S22: -0.2180 S23: 0.3701 REMARK 3 S31: -0.9411 S32: -0.0151 S33: 0.1533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 285:471 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.647 -0.625 117.784 REMARK 3 T TENSOR REMARK 3 T11: 0.5953 T22: 0.7925 REMARK 3 T33: 0.8634 T12: 0.0811 REMARK 3 T13: 0.0764 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 9.4870 L22: 5.5251 REMARK 3 L33: 6.3494 L12: 1.6267 REMARK 3 L13: 1.4154 L23: 0.4413 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.4883 S13: 1.0670 REMARK 3 S21: 0.0389 S22: -0.0518 S23: 0.4929 REMARK 3 S31: -0.3815 S32: -0.4192 S33: 0.0773 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 83:231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.171 -19.083 94.277 REMARK 3 T TENSOR REMARK 3 T11: 0.6308 T22: 0.9683 REMARK 3 T33: 0.8723 T12: 0.1098 REMARK 3 T13: -0.1283 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 0.5910 L22: 0.7595 REMARK 3 L33: 3.9371 L12: 0.2992 REMARK 3 L13: -0.8486 L23: 0.4456 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: -0.0940 S13: -0.0121 REMARK 3 S21: 0.0400 S22: 0.1734 S23: -0.1055 REMARK 3 S31: 0.6110 S32: 0.3134 S33: -0.1698 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 232:270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.833 -22.905 169.868 REMARK 3 T TENSOR REMARK 3 T11: 2.2525 T22: 1.9072 REMARK 3 T33: 1.2315 T12: -0.1488 REMARK 3 T13: -0.0099 T23: 0.3684 REMARK 3 L TENSOR REMARK 3 L11: 0.0785 L22: 1.0159 REMARK 3 L33: 4.7319 L12: -0.3286 REMARK 3 L13: 0.7967 L23: -1.3847 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: -0.5589 S13: -0.6089 REMARK 3 S21: 1.0187 S22: 0.3931 S23: -0.0023 REMARK 3 S31: 1.2366 S32: -2.2800 S33: -0.7248 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 271:471 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.118 19.275 116.599 REMARK 3 T TENSOR REMARK 3 T11: 1.0451 T22: 0.7189 REMARK 3 T33: 0.9396 T12: 0.1092 REMARK 3 T13: 0.0822 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 3.6414 L22: 8.5253 REMARK 3 L33: 5.6242 L12: 2.9276 REMARK 3 L13: -0.2651 L23: -0.1970 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.1448 S13: 0.7878 REMARK 3 S21: -0.0689 S22: 0.0384 S23: -0.3755 REMARK 3 S31: -1.6930 S32: -0.1110 S33: -0.1189 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 84 THROUGH 602) REMARK 3 SELECTION : (CHAIN B AND (RESID 84 THROUGH 396 OR REMARK 3 RESID 398 THROUGH 602)) REMARK 3 ATOM PAIRS NUMBER : 2376 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60046 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09720 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.28550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.61550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.28550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.61550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 HIS B 9 REMARK 465 GLN B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 SER B 13 REMARK 465 CYS B 14 REMARK 465 PRO B 15 REMARK 465 LEU B 16 REMARK 465 CYS B 17 REMARK 465 LEU B 18 REMARK 465 GLN B 19 REMARK 465 LEU B 20 REMARK 465 PHE B 21 REMARK 465 ASP B 22 REMARK 465 ALA B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 CYS B 29 REMARK 465 GLY B 30 REMARK 465 HIS B 31 REMARK 465 SER B 32 REMARK 465 PHE B 33 REMARK 465 CYS B 34 REMARK 465 ARG B 35 REMARK 465 ALA B 36 REMARK 465 CYS B 37 REMARK 465 LEU B 38 REMARK 465 GLY B 39 REMARK 465 ARG B 40 REMARK 465 VAL B 41 REMARK 465 ALA B 42 REMARK 465 GLY B 43 REMARK 465 GLU B 44 REMARK 465 PRO B 45 REMARK 465 ALA B 46 REMARK 465 ALA B 47 REMARK 465 ASP B 48 REMARK 465 GLY B 49 REMARK 465 THR B 50 REMARK 465 VAL B 51 REMARK 465 LEU B 52 REMARK 465 CYS B 53 REMARK 465 PRO B 54 REMARK 465 CYS B 55 REMARK 465 CYS B 56 REMARK 465 GLN B 57 REMARK 465 ALA B 58 REMARK 465 PRO B 59 REMARK 465 THR B 60 REMARK 465 ARG B 61 REMARK 465 PRO B 62 REMARK 465 GLN B 63 REMARK 465 ALA B 64 REMARK 465 LEU B 65 REMARK 465 SER B 66 REMARK 465 THR B 67 REMARK 465 ASN B 68 REMARK 465 LEU B 69 REMARK 465 GLN B 70 REMARK 465 LEU B 71 REMARK 465 ALA B 72 REMARK 465 ARG B 73 REMARK 465 LEU B 74 REMARK 465 VAL B 75 REMARK 465 GLU B 76 REMARK 465 GLY B 77 REMARK 465 LEU B 78 REMARK 465 ALA B 79 REMARK 465 GLN B 80 REMARK 465 VAL B 81 REMARK 465 PRO B 82 REMARK 465 GLN B 83 REMARK 465 PRO B 472 REMARK 465 GLU B 473 REMARK 465 GLY B 474 REMARK 465 ALA B 475 REMARK 465 GLU B 476 REMARK 465 ALA B 477 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 HIS A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 PRO A 15 REMARK 465 LEU A 16 REMARK 465 CYS A 17 REMARK 465 LEU A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 PHE A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 THR A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 CYS A 29 REMARK 465 GLY A 30 REMARK 465 HIS A 31 REMARK 465 SER A 32 REMARK 465 PHE A 33 REMARK 465 CYS A 34 REMARK 465 ARG A 35 REMARK 465 ALA A 36 REMARK 465 CYS A 37 REMARK 465 LEU A 38 REMARK 465 GLY A 39 REMARK 465 ARG A 40 REMARK 465 VAL A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 GLU A 44 REMARK 465 PRO A 45 REMARK 465 ALA A 46 REMARK 465 ALA A 47 REMARK 465 ASP A 48 REMARK 465 GLY A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 LEU A 52 REMARK 465 CYS A 53 REMARK 465 PRO A 54 REMARK 465 CYS A 55 REMARK 465 CYS A 56 REMARK 465 GLN A 57 REMARK 465 ALA A 58 REMARK 465 PRO A 59 REMARK 465 THR A 60 REMARK 465 ARG A 61 REMARK 465 PRO A 62 REMARK 465 GLN A 63 REMARK 465 ALA A 64 REMARK 465 LEU A 65 REMARK 465 SER A 66 REMARK 465 THR A 67 REMARK 465 ASN A 68 REMARK 465 LEU A 69 REMARK 465 GLN A 70 REMARK 465 LEU A 71 REMARK 465 ALA A 72 REMARK 465 ARG A 73 REMARK 465 LEU A 74 REMARK 465 VAL A 75 REMARK 465 GLU A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 VAL A 81 REMARK 465 PRO A 82 REMARK 465 ALA A 397 REMARK 465 PRO A 472 REMARK 465 GLU A 473 REMARK 465 GLY A 474 REMARK 465 ALA A 475 REMARK 465 GLU A 476 REMARK 465 ALA A 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 114 30.87 -145.26 REMARK 500 ALA B 259 153.60 69.30 REMARK 500 SER B 306 69.56 61.05 REMARK 500 ASP B 353 31.28 -91.60 REMARK 500 GLU B 387 18.10 55.95 REMARK 500 PHE B 439 148.63 -174.98 REMARK 500 CYS B 456 162.31 70.31 REMARK 500 HIS A 114 33.06 -89.59 REMARK 500 GLU A 387 18.50 52.21 REMARK 500 CYS A 456 165.80 69.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 86 SG REMARK 620 2 HIS B 89 NE2 99.6 REMARK 620 3 CYS B 105 SG 112.0 88.9 REMARK 620 4 CYS B 108 SG 125.0 96.0 120.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 ASP B 100 OD1 97.5 REMARK 620 3 HIS B 114 ND1 139.2 106.6 REMARK 620 4 HIS B 117 ND1 99.7 73.8 118.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 HIS A 89 ND1 114.7 REMARK 620 3 CYS A 105 SG 100.5 110.9 REMARK 620 4 CYS A 108 SG 112.9 101.3 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 HIS A 114 ND1 126.0 REMARK 620 3 HIS A 117 ND1 87.5 138.5 REMARK 620 N 1 2 DBREF 7XT2 B 1 477 UNP Q6ZMU5 TRI72_HUMAN 1 477 DBREF 7XT2 A 1 477 UNP Q6ZMU5 TRI72_HUMAN 1 477 SEQRES 1 B 477 MET SER ALA ALA PRO GLY LEU LEU HIS GLN GLU LEU SER SEQRES 2 B 477 CYS PRO LEU CYS LEU GLN LEU PHE ASP ALA PRO VAL THR SEQRES 3 B 477 ALA GLU CYS GLY HIS SER PHE CYS ARG ALA CYS LEU GLY SEQRES 4 B 477 ARG VAL ALA GLY GLU PRO ALA ALA ASP GLY THR VAL LEU SEQRES 5 B 477 CYS PRO CYS CYS GLN ALA PRO THR ARG PRO GLN ALA LEU SEQRES 6 B 477 SER THR ASN LEU GLN LEU ALA ARG LEU VAL GLU GLY LEU SEQRES 7 B 477 ALA GLN VAL PRO GLN GLY HIS CYS GLU GLU HIS LEU ASP SEQRES 8 B 477 PRO LEU SER ILE TYR CYS GLU GLN ASP ARG ALA LEU VAL SEQRES 9 B 477 CYS GLY VAL CYS ALA SER LEU GLY SER HIS ARG GLY HIS SEQRES 10 B 477 ARG LEU LEU PRO ALA ALA GLU ALA HIS ALA ARG LEU LYS SEQRES 11 B 477 THR GLN LEU PRO GLN GLN LYS LEU GLN LEU GLN GLU ALA SEQRES 12 B 477 CYS MET ARG LYS GLU LYS SER VAL ALA VAL LEU GLU HIS SEQRES 13 B 477 GLN LEU VAL GLU VAL GLU GLU THR VAL ARG GLN PHE ARG SEQRES 14 B 477 GLY ALA VAL GLY GLU GLN LEU GLY LYS MET ARG VAL PHE SEQRES 15 B 477 LEU ALA ALA LEU GLU GLY SER LEU ASP ARG GLU ALA GLU SEQRES 16 B 477 ARG VAL ARG GLY GLU ALA GLY VAL ALA LEU ARG ARG GLU SEQRES 17 B 477 LEU GLY SER LEU ASN SER TYR LEU GLU GLN LEU ARG GLN SEQRES 18 B 477 MET GLU LYS VAL LEU GLU GLU VAL ALA ASP LYS PRO GLN SEQRES 19 B 477 THR GLU PHE LEU MET LYS TYR CYS LEU VAL THR SER ARG SEQRES 20 B 477 LEU GLN LYS ILE LEU ALA GLU SER PRO PRO PRO ALA ARG SEQRES 21 B 477 LEU ASP ILE GLN LEU PRO ILE ILE SER ASP ASP PHE LYS SEQRES 22 B 477 PHE GLN VAL TRP ARG LYS MET PHE ARG ALA LEU MET PRO SEQRES 23 B 477 ALA LEU GLU GLU LEU THR PHE ASP PRO SER SER ALA HIS SEQRES 24 B 477 PRO SER LEU VAL VAL SER SER SER GLY ARG ARG VAL GLU SEQRES 25 B 477 CYS SER GLU GLN LYS ALA PRO PRO ALA GLY GLU ASP PRO SEQRES 26 B 477 ARG GLN PHE ASP LYS ALA VAL ALA VAL VAL ALA HIS GLN SEQRES 27 B 477 GLN LEU SER GLU GLY GLU HIS TYR TRP GLU VAL ASP VAL SEQRES 28 B 477 GLY ASP LYS PRO ARG TRP ALA LEU GLY VAL ILE ALA ALA SEQRES 29 B 477 GLU ALA PRO ARG ARG GLY ARG LEU HIS ALA VAL PRO SER SEQRES 30 B 477 GLN GLY LEU TRP LEU LEU GLY LEU ARG GLU GLY LYS ILE SEQRES 31 B 477 LEU GLU ALA HIS VAL GLU ALA LYS GLU PRO ARG ALA LEU SEQRES 32 B 477 ARG SER PRO GLU ARG ARG PRO THR ARG ILE GLY LEU TYR SEQRES 33 B 477 LEU SER PHE GLY ASP GLY VAL LEU SER PHE TYR ASP ALA SEQRES 34 B 477 SER ASP ALA ASP ALA LEU VAL PRO LEU PHE ALA PHE HIS SEQRES 35 B 477 GLU ARG LEU PRO ARG PRO VAL TYR PRO PHE PHE ASP VAL SEQRES 36 B 477 CYS TRP HIS ASP LYS GLY LYS ASN ALA GLN PRO LEU LEU SEQRES 37 B 477 LEU VAL GLY PRO GLU GLY ALA GLU ALA SEQRES 1 A 477 MET SER ALA ALA PRO GLY LEU LEU HIS GLN GLU LEU SER SEQRES 2 A 477 CYS PRO LEU CYS LEU GLN LEU PHE ASP ALA PRO VAL THR SEQRES 3 A 477 ALA GLU CYS GLY HIS SER PHE CYS ARG ALA CYS LEU GLY SEQRES 4 A 477 ARG VAL ALA GLY GLU PRO ALA ALA ASP GLY THR VAL LEU SEQRES 5 A 477 CYS PRO CYS CYS GLN ALA PRO THR ARG PRO GLN ALA LEU SEQRES 6 A 477 SER THR ASN LEU GLN LEU ALA ARG LEU VAL GLU GLY LEU SEQRES 7 A 477 ALA GLN VAL PRO GLN GLY HIS CYS GLU GLU HIS LEU ASP SEQRES 8 A 477 PRO LEU SER ILE TYR CYS GLU GLN ASP ARG ALA LEU VAL SEQRES 9 A 477 CYS GLY VAL CYS ALA SER LEU GLY SER HIS ARG GLY HIS SEQRES 10 A 477 ARG LEU LEU PRO ALA ALA GLU ALA HIS ALA ARG LEU LYS SEQRES 11 A 477 THR GLN LEU PRO GLN GLN LYS LEU GLN LEU GLN GLU ALA SEQRES 12 A 477 CYS MET ARG LYS GLU LYS SER VAL ALA VAL LEU GLU HIS SEQRES 13 A 477 GLN LEU VAL GLU VAL GLU GLU THR VAL ARG GLN PHE ARG SEQRES 14 A 477 GLY ALA VAL GLY GLU GLN LEU GLY LYS MET ARG VAL PHE SEQRES 15 A 477 LEU ALA ALA LEU GLU GLY SER LEU ASP ARG GLU ALA GLU SEQRES 16 A 477 ARG VAL ARG GLY GLU ALA GLY VAL ALA LEU ARG ARG GLU SEQRES 17 A 477 LEU GLY SER LEU ASN SER TYR LEU GLU GLN LEU ARG GLN SEQRES 18 A 477 MET GLU LYS VAL LEU GLU GLU VAL ALA ASP LYS PRO GLN SEQRES 19 A 477 THR GLU PHE LEU MET LYS TYR CYS LEU VAL THR SER ARG SEQRES 20 A 477 LEU GLN LYS ILE LEU ALA GLU SER PRO PRO PRO ALA ARG SEQRES 21 A 477 LEU ASP ILE GLN LEU PRO ILE ILE SER ASP ASP PHE LYS SEQRES 22 A 477 PHE GLN VAL TRP ARG LYS MET PHE ARG ALA LEU MET PRO SEQRES 23 A 477 ALA LEU GLU GLU LEU THR PHE ASP PRO SER SER ALA HIS SEQRES 24 A 477 PRO SER LEU VAL VAL SER SER SER GLY ARG ARG VAL GLU SEQRES 25 A 477 CYS SER GLU GLN LYS ALA PRO PRO ALA GLY GLU ASP PRO SEQRES 26 A 477 ARG GLN PHE ASP LYS ALA VAL ALA VAL VAL ALA HIS GLN SEQRES 27 A 477 GLN LEU SER GLU GLY GLU HIS TYR TRP GLU VAL ASP VAL SEQRES 28 A 477 GLY ASP LYS PRO ARG TRP ALA LEU GLY VAL ILE ALA ALA SEQRES 29 A 477 GLU ALA PRO ARG ARG GLY ARG LEU HIS ALA VAL PRO SER SEQRES 30 A 477 GLN GLY LEU TRP LEU LEU GLY LEU ARG GLU GLY LYS ILE SEQRES 31 A 477 LEU GLU ALA HIS VAL GLU ALA LYS GLU PRO ARG ALA LEU SEQRES 32 A 477 ARG SER PRO GLU ARG ARG PRO THR ARG ILE GLY LEU TYR SEQRES 33 A 477 LEU SER PHE GLY ASP GLY VAL LEU SER PHE TYR ASP ALA SEQRES 34 A 477 SER ASP ALA ASP ALA LEU VAL PRO LEU PHE ALA PHE HIS SEQRES 35 A 477 GLU ARG LEU PRO ARG PRO VAL TYR PRO PHE PHE ASP VAL SEQRES 36 A 477 CYS TRP HIS ASP LYS GLY LYS ASN ALA GLN PRO LEU LEU SEQRES 37 A 477 LEU VAL GLY PRO GLU GLY ALA GLU ALA HET ZN B 601 1 HET ZN B 602 1 HET ZN A 601 1 HET ZN A 602 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) HELIX 1 AA1 CYS B 105 LEU B 111 1 7 HELIX 2 AA2 ALA B 122 ALA B 230 1 109 HELIX 3 AA3 PRO B 233 SER B 255 1 23 HELIX 4 AA4 ASP B 271 MET B 285 1 15 HELIX 5 AA5 ASP B 294 ALA B 298 5 5 HELIX 6 AA6 VAL B 375 GLN B 378 5 4 HELIX 7 AA7 ASP B 431 LEU B 435 5 5 HELIX 8 AA8 HIS B 458 LYS B 462 5 5 HELIX 9 AA9 CYS A 105 LEU A 111 1 7 HELIX 10 AB1 ALA A 122 VAL A 229 1 108 HELIX 11 AB2 ALA A 230 LYS A 232 5 3 HELIX 12 AB3 PRO A 233 GLU A 254 1 22 HELIX 13 AB4 ASP A 270 MET A 285 1 16 HELIX 14 AB5 ASP A 294 ALA A 298 5 5 HELIX 15 AB6 VAL A 375 GLN A 378 5 4 SHEET 1 AA1 3 ALA B 102 VAL B 104 0 SHEET 2 AA1 3 ILE B 95 CYS B 97 -1 N ILE B 95 O VAL B 104 SHEET 3 AA1 3 LEU B 119 PRO B 121 -1 O LEU B 120 N TYR B 96 SHEET 1 AA2 7 LEU B 302 SER B 305 0 SHEET 2 AA2 7 ARG B 310 CYS B 313 -1 O ARG B 310 N SER B 305 SHEET 3 AA2 7 LEU B 467 LEU B 469 -1 O LEU B 467 N VAL B 311 SHEET 4 AA2 7 GLU B 344 ASP B 350 -1 N ASP B 350 O LEU B 468 SHEET 5 AA2 7 ARG B 412 SER B 418 -1 O ILE B 413 N VAL B 349 SHEET 6 AA2 7 VAL B 423 ASP B 428 -1 O TYR B 427 N GLY B 414 SHEET 7 AA2 7 VAL B 436 PHE B 441 -1 O PHE B 439 N PHE B 426 SHEET 1 AA3 6 ALA B 333 VAL B 335 0 SHEET 2 AA3 6 VAL B 449 ASP B 454 -1 O PHE B 453 N VAL B 334 SHEET 3 AA3 6 TRP B 357 ALA B 363 -1 N GLY B 360 O PHE B 452 SHEET 4 AA3 6 LEU B 380 ARG B 386 -1 O TRP B 381 N VAL B 361 SHEET 5 AA3 6 ILE B 390 HIS B 394 -1 O GLU B 392 N GLY B 384 SHEET 6 AA3 6 ARG B 401 ALA B 402 -1 O ARG B 401 N ALA B 393 SHEET 1 AA4 3 ALA A 102 VAL A 104 0 SHEET 2 AA4 3 ILE A 95 CYS A 97 -1 N ILE A 95 O VAL A 104 SHEET 3 AA4 3 LEU A 119 PRO A 121 -1 O LEU A 120 N TYR A 96 SHEET 1 AA5 7 LEU A 302 VAL A 304 0 SHEET 2 AA5 7 ARG A 310 CYS A 313 -1 O GLU A 312 N VAL A 303 SHEET 3 AA5 7 LEU A 467 LEU A 469 -1 O LEU A 467 N VAL A 311 SHEET 4 AA5 7 GLU A 344 ASP A 350 -1 N ASP A 350 O LEU A 468 SHEET 5 AA5 7 ARG A 412 SER A 418 -1 O ILE A 413 N VAL A 349 SHEET 6 AA5 7 VAL A 423 ASP A 428 -1 O SER A 425 N TYR A 416 SHEET 7 AA5 7 VAL A 436 PHE A 441 -1 O PHE A 439 N PHE A 426 SHEET 1 AA6 6 ALA A 333 VAL A 335 0 SHEET 2 AA6 6 VAL A 449 ASP A 454 -1 O PHE A 453 N VAL A 334 SHEET 3 AA6 6 TRP A 357 ALA A 363 -1 N ALA A 358 O ASP A 454 SHEET 4 AA6 6 LEU A 380 ARG A 386 -1 O LEU A 383 N LEU A 359 SHEET 5 AA6 6 ILE A 390 HIS A 394 -1 O GLU A 392 N GLY A 384 SHEET 6 AA6 6 ARG A 401 LEU A 403 -1 O ARG A 401 N ALA A 393 LINK SG CYS B 86 ZN ZN B 602 1555 1555 2.33 LINK NE2 HIS B 89 ZN ZN B 602 1555 1555 2.19 LINK SG CYS B 97 ZN ZN B 601 1555 1555 2.27 LINK OD1 ASP B 100 ZN ZN B 601 1555 1555 2.63 LINK SG CYS B 105 ZN ZN B 602 1555 1555 2.35 LINK SG CYS B 108 ZN ZN B 602 1555 1555 2.31 LINK ND1 HIS B 114 ZN ZN B 601 1555 1555 2.28 LINK ND1 HIS B 117 ZN ZN B 601 1555 1555 2.27 LINK SG CYS A 86 ZN ZN A 601 1555 1555 2.27 LINK ND1 HIS A 89 ZN ZN A 601 1555 1555 2.15 LINK SG CYS A 97 ZN ZN A 602 1555 1555 2.31 LINK SG CYS A 105 ZN ZN A 601 1555 1555 2.31 LINK SG CYS A 108 ZN ZN A 601 1555 1555 2.29 LINK ND1 HIS A 114 ZN ZN A 602 1555 1555 2.21 LINK ND1 HIS A 117 ZN ZN A 602 1555 1555 2.27 CISPEP 1 ARG B 447 PRO B 448 0 0.85 CISPEP 2 ARG A 447 PRO A 448 0 1.76 CRYST1 72.571 125.231 174.537 90.00 91.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013780 0.000000 0.000349 0.00000 SCALE2 0.000000 0.007985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005731 0.00000