HEADER SUGAR BINDING PROTEIN 17-MAY-22 7XTL TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN N- TITLE 2 ACETYLGLUCOSAMINYLTRANSFERASE IVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 4-BETA-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE A SOLUBLE FORM; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CBM DOMAIN; COMPND 6 SYNONYM: MGAT4A; COMPND 7 EC: 2.4.1.145; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: HEK293; SOURCE 6 GENE: MGAT4A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSYLTRANSFERASE, N-GLYCAN, N-GLYCOSYLATION, GOLGI, N- KEYWDS 2 ACETYLGLUCOSAMINE, CARBOHYDRATE-BINDING MODULE, LECTIN, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAZAKI,N.OKA,S.MORI REVDAT 3 03-APR-24 7XTL 1 REMARK REVDAT 2 07-DEC-22 7XTL 1 JRNL REVDAT 1 28-SEP-22 7XTL 0 JRNL AUTH N.OKA,S.MORI,M.IKEGAYA,E.Y.PARK,T.MIYAZAKI JRNL TITL CRYSTAL STRUCTURE AND SUGAR-BINDING ABILITY OF THE JRNL TITL 2 C-TERMINAL DOMAIN OF N-ACETYLGLUCOSAMINYLTRANSFERASE IV JRNL TITL 3 ESTABLISH A NEW CARBOHYDRATE-BINDING MODULE FAMILY. JRNL REF GLYCOBIOLOGY V. 32 1153 2022 JRNL REFN ESSN 1460-2423 JRNL PMID 36106687 JRNL DOI 10.1093/GLYCOB/CWAC058 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.775 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.94500 REMARK 3 B22 (A**2) : 2.99100 REMARK 3 B33 (A**2) : -5.82500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2397 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2256 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3252 ; 1.704 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5227 ; 1.265 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 8.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;31.939 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;15.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2689 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 523 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 358 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 39 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1082 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 2.969 ; 4.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1174 ; 2.961 ; 4.523 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1467 ; 4.181 ; 6.769 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1468 ; 4.182 ; 6.770 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 3.210 ; 4.864 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1223 ; 3.209 ; 4.866 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1785 ; 4.735 ; 7.149 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1786 ; 4.733 ; 7.151 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 387 A 534 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6076 -0.6165 6.9604 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.0189 REMARK 3 T33: 0.2247 T12: 0.0144 REMARK 3 T13: 0.0654 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.5735 L22: 1.3119 REMARK 3 L33: 1.9697 L12: 0.2897 REMARK 3 L13: -0.9716 L23: 0.1011 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0226 S13: -0.0139 REMARK 3 S21: 0.1026 S22: -0.1085 S23: 0.0282 REMARK 3 S31: 0.0775 S32: -0.0982 S33: 0.1131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 390 B 534 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1480 4.1358 -34.5946 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.3924 REMARK 3 T33: 0.1106 T12: -0.0342 REMARK 3 T13: 0.0358 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 0.8177 L22: 1.8945 REMARK 3 L33: 6.0913 L12: -0.6930 REMARK 3 L13: 1.8286 L23: 0.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.3851 S13: -0.0084 REMARK 3 S21: -0.2602 S22: -0.0607 S23: 0.0439 REMARK 3 S31: -0.1513 S32: 1.2637 S33: 0.0225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20101 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 85.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.20700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: ALPHAFOLD2 MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM NITRATE, 20%(W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 364 REMARK 465 GLY A 365 REMARK 465 SER A 366 REMARK 465 SER A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 SER A 374 REMARK 465 SER A 375 REMARK 465 GLY A 376 REMARK 465 LEU A 377 REMARK 465 VAL A 378 REMARK 465 PRO A 379 REMARK 465 ARG A 380 REMARK 465 GLY A 381 REMARK 465 SER A 382 REMARK 465 HIS A 383 REMARK 465 MET A 384 REMARK 465 ALA A 385 REMARK 465 SER A 386 REMARK 465 ASN A 535 REMARK 465 MET B 364 REMARK 465 GLY B 365 REMARK 465 SER B 366 REMARK 465 SER B 367 REMARK 465 HIS B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 SER B 374 REMARK 465 SER B 375 REMARK 465 GLY B 376 REMARK 465 LEU B 377 REMARK 465 VAL B 378 REMARK 465 PRO B 379 REMARK 465 ARG B 380 REMARK 465 GLY B 381 REMARK 465 SER B 382 REMARK 465 HIS B 383 REMARK 465 MET B 384 REMARK 465 ALA B 385 REMARK 465 SER B 386 REMARK 465 LYS B 387 REMARK 465 ILE B 388 REMARK 465 HIS B 389 REMARK 465 ASN B 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 394 C ALA B 394 O 0.154 REMARK 500 LYS B 432 C LYS B 432 O 0.211 REMARK 500 THR B 534 C THR B 534 O 0.303 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 422 81.09 23.16 REMARK 500 LEU A 471 115.10 -175.65 REMARK 500 GLN B 404 66.05 67.80 REMARK 500 THR B 422 94.02 -4.45 REMARK 500 LYS B 467 111.39 -12.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XTL A 387 535 UNP Q9UM21 MGT4A_HUMAN 387 535 DBREF 7XTL B 387 535 UNP Q9UM21 MGT4A_HUMAN 387 535 SEQADV 7XTL MET A 364 UNP Q9UM21 INITIATING METHIONINE SEQADV 7XTL GLY A 365 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER A 366 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER A 367 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 368 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 369 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 370 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 371 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 372 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 373 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER A 374 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER A 375 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL GLY A 376 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL LEU A 377 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL VAL A 378 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL PRO A 379 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL ARG A 380 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL GLY A 381 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER A 382 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS A 383 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL MET A 384 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL ALA A 385 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER A 386 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL MET B 364 UNP Q9UM21 INITIATING METHIONINE SEQADV 7XTL GLY B 365 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER B 366 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER B 367 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 368 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 369 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 370 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 371 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 372 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 373 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER B 374 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER B 375 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL GLY B 376 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL LEU B 377 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL VAL B 378 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL PRO B 379 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL ARG B 380 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL GLY B 381 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER B 382 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL HIS B 383 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL MET B 384 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL ALA B 385 UNP Q9UM21 EXPRESSION TAG SEQADV 7XTL SER B 386 UNP Q9UM21 EXPRESSION TAG SEQRES 1 A 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 172 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS ILE HIS SEQRES 3 A 172 VAL ASN PRO PRO ALA GLU VAL SER THR SER LEU LYS VAL SEQRES 4 A 172 TYR GLN GLY HIS THR LEU GLU LYS THR TYR MET GLY GLU SEQRES 5 A 172 ASP PHE PHE TRP ALA ILE THR PRO ILE ALA GLY ASP TYR SEQRES 6 A 172 ILE LEU PHE LYS PHE ASP LYS PRO VAL ASN VAL GLU SER SEQRES 7 A 172 TYR LEU PHE HIS SER GLY ASN GLN GLU HIS PRO GLY ASP SEQRES 8 A 172 ILE LEU LEU ASN THR THR VAL GLU VAL LEU PRO PHE LYS SEQRES 9 A 172 SER GLU GLY LEU GLU ILE SER LYS GLU THR LYS ASP LYS SEQRES 10 A 172 ARG LEU GLU ASP GLY TYR PHE ARG ILE GLY LYS PHE GLU SEQRES 11 A 172 ASN GLY VAL ALA GLU GLY MET VAL ASP PRO SER LEU ASN SEQRES 12 A 172 PRO ILE SER ALA PHE ARG LEU SER VAL ILE GLN ASN SER SEQRES 13 A 172 ALA VAL TRP ALA ILE LEU ASN GLU ILE HIS ILE LYS LYS SEQRES 14 A 172 ALA THR ASN SEQRES 1 B 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 172 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS ILE HIS SEQRES 3 B 172 VAL ASN PRO PRO ALA GLU VAL SER THR SER LEU LYS VAL SEQRES 4 B 172 TYR GLN GLY HIS THR LEU GLU LYS THR TYR MET GLY GLU SEQRES 5 B 172 ASP PHE PHE TRP ALA ILE THR PRO ILE ALA GLY ASP TYR SEQRES 6 B 172 ILE LEU PHE LYS PHE ASP LYS PRO VAL ASN VAL GLU SER SEQRES 7 B 172 TYR LEU PHE HIS SER GLY ASN GLN GLU HIS PRO GLY ASP SEQRES 8 B 172 ILE LEU LEU ASN THR THR VAL GLU VAL LEU PRO PHE LYS SEQRES 9 B 172 SER GLU GLY LEU GLU ILE SER LYS GLU THR LYS ASP LYS SEQRES 10 B 172 ARG LEU GLU ASP GLY TYR PHE ARG ILE GLY LYS PHE GLU SEQRES 11 B 172 ASN GLY VAL ALA GLU GLY MET VAL ASP PRO SER LEU ASN SEQRES 12 B 172 PRO ILE SER ALA PHE ARG LEU SER VAL ILE GLN ASN SER SEQRES 13 B 172 ALA VAL TRP ALA ILE LEU ASN GLU ILE HIS ILE LYS LYS SEQRES 14 B 172 ALA THR ASN FORMUL 3 HOH *22(H2 O) HELIX 1 AA1 THR A 407 GLY A 414 1 8 HELIX 2 AA2 SER A 474 ASP A 479 1 6 HELIX 3 AA3 ASP A 502 ASN A 506 5 5 HELIX 4 AA4 THR B 407 MET B 413 1 7 HELIX 5 AA5 SER B 474 ASP B 479 1 6 HELIX 6 AA6 ASP B 502 ASN B 506 5 5 SHEET 1 AA1 5 ALA A 394 THR A 398 0 SHEET 2 AA1 5 TYR A 428 SER A 446 -1 O LEU A 430 N SER A 397 SHEET 3 AA1 5 ILE A 508 VAL A 515 -1 O PHE A 511 N PHE A 431 SHEET 4 AA1 5 THR A 459 PRO A 465 -1 N LEU A 464 O SER A 509 SHEET 5 AA1 5 PHE A 487 LYS A 491 -1 O PHE A 487 N VAL A 463 SHEET 1 AA2 4 PHE A 418 ALA A 420 0 SHEET 2 AA2 4 ALA A 523 THR A 534 -1 O ALA A 523 N ALA A 420 SHEET 3 AA2 4 TYR A 428 SER A 446 -1 N LEU A 443 O HIS A 529 SHEET 4 AA2 4 VAL A 496 MET A 500 -1 O ALA A 497 N PHE A 444 SHEET 1 AA3 5 ALA B 394 THR B 398 0 SHEET 2 AA3 5 TYR B 428 VAL B 437 -1 O LYS B 432 N GLU B 395 SHEET 3 AA3 5 ILE B 508 VAL B 515 -1 O ILE B 508 N VAL B 437 SHEET 4 AA3 5 THR B 459 PRO B 465 -1 N LEU B 464 O SER B 509 SHEET 5 AA3 5 PHE B 487 LYS B 491 -1 O PHE B 487 N VAL B 463 SHEET 1 AA4 4 PHE B 418 ALA B 420 0 SHEET 2 AA4 4 ALA B 523 LYS B 532 -1 O ALA B 523 N ALA B 420 SHEET 3 AA4 4 VAL B 439 SER B 446 -1 N LEU B 443 O HIS B 529 SHEET 4 AA4 4 VAL B 496 MET B 500 -1 O ALA B 497 N PHE B 444 CISPEP 1 ASN A 506 PRO A 507 0 -5.44 CISPEP 2 ASN B 506 PRO B 507 0 -8.09 CRYST1 50.699 32.490 85.629 90.00 94.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019724 0.000000 0.001625 0.00000 SCALE2 0.000000 0.030779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011718 0.00000