HEADER SUGAR BINDING PROTEIN 17-MAY-22 7XTN TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF BOMBYX MORI N- TITLE 2 ACETYLGLUCOSAMINYLTRANSFERASE IV IN COMPLEX WITH N-ACETYLGLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINYLTRANSFERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBM DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: GB:BDI24347.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 4 ORGANISM_TAXID: 7092; SOURCE 5 GENE: MGAT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSYLTRANSFERASE, N-GLYCAN, N-GLYCOSYLATION, GOLGI, N- KEYWDS 2 ACETYLGLUCOSAMINE, CARBOHYDRATE-BINDING MODULE, LECTIN, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAZAKI,N.OKA,S.MORI REVDAT 4 03-APR-24 7XTN 1 REMARK REVDAT 3 07-DEC-22 7XTN 1 JRNL REVDAT 2 30-NOV-22 7XTN 1 COMPND SOURCE DBREF SEQADV REVDAT 1 28-SEP-22 7XTN 0 JRNL AUTH N.OKA,S.MORI,M.IKEGAYA,E.Y.PARK,T.MIYAZAKI JRNL TITL CRYSTAL STRUCTURE AND SUGAR-BINDING ABILITY OF THE JRNL TITL 2 C-TERMINAL DOMAIN OF N-ACETYLGLUCOSAMINYLTRANSFERASE IV JRNL TITL 3 ESTABLISH A NEW CARBOHYDRATE-BINDING MODULE FAMILY. JRNL REF GLYCOBIOLOGY V. 32 1153 2022 JRNL REFN ESSN 1460-2423 JRNL PMID 36106687 JRNL DOI 10.1093/GLYCOB/CWAC058 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 113579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.035 REMARK 3 FREE R VALUE TEST SET COUNT : 5719 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 420 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53400 REMARK 3 B22 (A**2) : 0.21500 REMARK 3 B33 (A**2) : -0.65300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2653 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2377 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3606 ; 1.677 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5483 ; 1.423 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 7.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;33.022 ;23.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;12.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3010 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 660 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 394 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 142 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1229 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1211 ; 0.811 ; 1.097 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1210 ; 0.810 ; 1.096 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1511 ; 1.317 ; 1.645 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1512 ; 1.317 ; 1.646 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 1.264 ; 1.324 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1443 ; 1.263 ; 1.326 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2090 ; 1.998 ; 1.912 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2091 ; 1.998 ; 1.913 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 392 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3334 1.6567 15.3494 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.0629 REMARK 3 T33: 0.1232 T12: 0.0033 REMARK 3 T13: 0.0315 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1270 L22: 0.9060 REMARK 3 L33: 1.0387 L12: 0.2087 REMARK 3 L13: -0.2445 L23: 0.0476 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.0093 S13: 0.0019 REMARK 3 S21: 0.1952 S22: -0.0371 S23: 0.1606 REMARK 3 S31: 0.0165 S32: -0.0525 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 461 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5730 0.3307 2.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.0511 REMARK 3 T33: 0.0660 T12: -0.0014 REMARK 3 T13: -0.0010 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.2835 L22: 1.0141 REMARK 3 L33: 1.1595 L12: -0.0443 REMARK 3 L13: 0.1807 L23: 0.2547 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0027 S13: -0.0307 REMARK 3 S21: -0.0605 S22: 0.0085 S23: 0.0058 REMARK 3 S31: -0.0210 S32: 0.0571 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 401 B 448 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4873 -32.8590 27.5929 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.1414 REMARK 3 T33: 0.0747 T12: 0.0176 REMARK 3 T13: -0.0017 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.0400 L22: 1.2296 REMARK 3 L33: 1.8081 L12: 0.1456 REMARK 3 L13: -0.1012 L23: 0.1143 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0464 S13: 0.0432 REMARK 3 S21: -0.0935 S22: -0.0242 S23: 0.2002 REMARK 3 S31: 0.0718 S32: -0.2120 S33: 0.0245 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 449 B 548 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4354 -29.7547 35.9223 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.0793 REMARK 3 T33: 0.0670 T12: -0.0010 REMARK 3 T13: -0.0013 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.2044 L22: 1.3821 REMARK 3 L33: 1.2091 L12: -0.0327 REMARK 3 L13: 0.0184 L23: 0.1361 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0699 S13: 0.0493 REMARK 3 S21: 0.1653 S22: -0.0815 S23: -0.0389 REMARK 3 S31: 0.0517 S32: 0.1289 S33: 0.0371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 39.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: ALPHAFOLD2 MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-NAOH, PH 7.0, 12%(W/V) REMARK 280 PEG20000, 10 MM N-ACETYLGLUCOSAMINE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.04900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 388 REMARK 465 GLY A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 GLU A 548 REMARK 465 LYS A 549 REMARK 465 LYS A 550 REMARK 465 THR A 551 REMARK 465 MET B 388 REMARK 465 GLY B 389 REMARK 465 SER B 390 REMARK 465 SER B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 SER B 398 REMARK 465 SER B 399 REMARK 465 GLY B 400 REMARK 465 ARG B 404 REMARK 465 GLY B 405 REMARK 465 SER B 406 REMARK 465 LYS B 549 REMARK 465 LYS B 550 REMARK 465 THR B 551 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 430 -123.51 43.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XTN A 388 551 PDB 7XTN 7XTN 388 551 DBREF 7XTN B 388 551 PDB 7XTN 7XTN 388 551 SEQRES 1 A 164 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 164 LEU VAL PRO ARG GLY SER HIS MET GLN SER TYR PHE PRO SEQRES 3 A 164 HIS GLN ASN PRO PRO ALA GLN LYS ILE THR THR THR ILE SEQRES 4 A 164 GLU ASP TYR TYR GLN HIS SER ILE GLN ASN ALA TYR GLU SEQRES 5 A 164 GLY ILE ASP PHE PHE TRP GLY LYS LYS PRO LYS LYS GLY SEQRES 6 A 164 ASP THR LEU GLU PHE TRP TYR GLY ARG PRO LEU GLN ILE SEQRES 7 A 164 LYS ARG VAL THR PHE ARG SER GLY ASN ALA GLU HIS ILE SEQRES 8 A 164 THR ASP GLN PHE TYR ASN THR VAL VAL GLU VAL LEU PRO SEQRES 9 A 164 ALA PHE GLY ASP ASN ASN PHE THR THR ILE LEU HIS PHE SEQRES 10 A 164 ASP GLU PHE GLY LEU ALA ASP GLY ASP VAL GLU GLU GLU SEQRES 11 A 164 PHE SER LEU VAL LYS ALA ILE ARG LEU ARG VAL ASN ALA SEQRES 12 A 164 ASP SER LYS TYR TRP VAL ILE LEU SER GLU ILE TYR ILE SEQRES 13 A 164 GLN THR PRO ASP GLU LYS LYS THR SEQRES 1 B 164 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 164 LEU VAL PRO ARG GLY SER HIS MET GLN SER TYR PHE PRO SEQRES 3 B 164 HIS GLN ASN PRO PRO ALA GLN LYS ILE THR THR THR ILE SEQRES 4 B 164 GLU ASP TYR TYR GLN HIS SER ILE GLN ASN ALA TYR GLU SEQRES 5 B 164 GLY ILE ASP PHE PHE TRP GLY LYS LYS PRO LYS LYS GLY SEQRES 6 B 164 ASP THR LEU GLU PHE TRP TYR GLY ARG PRO LEU GLN ILE SEQRES 7 B 164 LYS ARG VAL THR PHE ARG SER GLY ASN ALA GLU HIS ILE SEQRES 8 B 164 THR ASP GLN PHE TYR ASN THR VAL VAL GLU VAL LEU PRO SEQRES 9 B 164 ALA PHE GLY ASP ASN ASN PHE THR THR ILE LEU HIS PHE SEQRES 10 B 164 ASP GLU PHE GLY LEU ALA ASP GLY ASP VAL GLU GLU GLU SEQRES 11 B 164 PHE SER LEU VAL LYS ALA ILE ARG LEU ARG VAL ASN ALA SEQRES 12 B 164 ASP SER LYS TYR TRP VAL ILE LEU SER GLU ILE TYR ILE SEQRES 13 B 164 GLN THR PRO ASP GLU LYS LYS THR HET NAG A 601 15 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET NAG B 601 15 HET EDO B 602 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *214(H2 O) HELIX 1 AA1 SER A 433 GLU A 439 1 7 HELIX 2 AA2 GLU A 515 PHE A 518 5 4 HELIX 3 AA3 SER B 433 GLU B 439 1 7 HELIX 4 AA4 GLU B 515 PHE B 518 5 4 SHEET 1 AA1 5 LYS A 421 THR A 424 0 SHEET 2 AA1 5 THR A 454 GLN A 464 -1 O TRP A 458 N LYS A 421 SHEET 3 AA1 5 LEU A 520 VAL A 528 -1 O ILE A 524 N PHE A 457 SHEET 4 AA1 5 THR A 485 PRO A 491 -1 N LEU A 490 O LYS A 522 SHEET 5 AA1 5 THR A 499 HIS A 503 -1 O ILE A 501 N VAL A 487 SHEET 1 AA2 4 PHE A 444 GLY A 446 0 SHEET 2 AA2 4 VAL A 536 GLN A 544 -1 O VAL A 536 N GLY A 446 SHEET 3 AA2 4 ARG A 467 SER A 472 -1 N ARG A 471 O GLU A 540 SHEET 4 AA2 4 LEU A 509 ASP A 513 -1 O ALA A 510 N PHE A 470 SHEET 1 AA3 5 LYS B 421 THR B 424 0 SHEET 2 AA3 5 THR B 454 GLN B 464 -1 O GLU B 456 N THR B 423 SHEET 3 AA3 5 LEU B 520 VAL B 528 -1 O ILE B 524 N PHE B 457 SHEET 4 AA3 5 THR B 485 PRO B 491 -1 N LEU B 490 O LYS B 522 SHEET 5 AA3 5 THR B 499 HIS B 503 -1 O THR B 499 N VAL B 489 SHEET 1 AA4 4 PHE B 444 GLY B 446 0 SHEET 2 AA4 4 VAL B 536 GLN B 544 -1 O VAL B 536 N GLY B 446 SHEET 3 AA4 4 ARG B 467 SER B 472 -1 N ARG B 471 O GLU B 540 SHEET 4 AA4 4 LEU B 509 ASP B 513 -1 O ALA B 510 N PHE B 470 CRYST1 32.697 64.098 79.148 90.00 95.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030584 0.000000 0.003156 0.00000 SCALE2 0.000000 0.015601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012702 0.00000