HEADER OXIDOREDUCTASE 26-MAY-22 7XWK TITLE STRUCTURE OF PATULIN-DETOXIFYING ENZYME Y155F WITH NADPH AND SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEYEROZYMA GUILLIERMONDII; SOURCE 3 ORGANISM_TAXID: 4929; SOURCE 4 GENE: SDR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASES/REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DAI,H.LI,Y.HU,R.T.GUO,C.C.CHEN REVDAT 3 08-MAY-24 7XWK 1 JRNL REVDAT 2 29-NOV-23 7XWK 1 REMARK REVDAT 1 26-OCT-22 7XWK 0 JRNL AUTH L.DAI,H.LI,J.W.HUANG,Y.HU,M.HE,Y.YANG,J.MIN,R.T.GUO,C.C.CHEN JRNL TITL STRUCTURE-BASED RATIONAL DESIGN OF A SHORT-CHAIN JRNL TITL 2 DEHYDROGENASE/REDUCTASE FOR IMPROVING ACTIVITY TOWARD JRNL TITL 3 MYCOTOXIN PATULIN. JRNL REF INT.J.BIOL.MACROMOL. V. 222 421 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 36176222 JRNL DOI 10.1016/J.IJBIOMAC.2022.09.121 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 50294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 258 REMARK 3 SOLVENT ATOMS : 636 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7338 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6776 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9980 ; 1.778 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15792 ; 1.336 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 886 ; 7.177 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 322 ;36.759 ;24.037 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1214 ;16.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 996 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8028 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1438 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7XWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300029774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34138 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 35.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.580 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.4457 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44570 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7XWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-23% PEG SMEAR BROAD, 0.1 M MES PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.54500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 ASP A 191 REMARK 465 MET A 192 REMARK 465 GLY A 193 REMARK 465 LYS A 194 REMARK 465 GLY A 195 REMARK 465 GLY A 196 REMARK 465 GLU A 197 REMARK 465 ARG A 198 REMARK 465 ALA A 199 REMARK 465 PHE A 200 REMARK 465 THR A 201 REMARK 465 ALA A 202 REMARK 465 VAL A 203 REMARK 465 ASP A 204 REMARK 465 GLU A 205 REMARK 465 VAL A 206 REMARK 465 SER A 207 REMARK 465 ALA A 208 REMARK 465 LYS A 209 REMARK 465 LYS A 210 REMARK 465 PHE A 211 REMARK 465 PHE A 212 REMARK 465 THR A 213 REMARK 465 PRO A 214 REMARK 465 GLU A 215 REMARK 465 THR B 189 REMARK 465 THR B 190 REMARK 465 ASP B 191 REMARK 465 MET B 192 REMARK 465 GLY B 193 REMARK 465 LYS B 194 REMARK 465 GLY B 195 REMARK 465 GLY B 196 REMARK 465 GLU B 197 REMARK 465 ARG B 198 REMARK 465 ALA B 199 REMARK 465 PHE B 200 REMARK 465 THR B 201 REMARK 465 ALA B 202 REMARK 465 VAL B 203 REMARK 465 ASP B 204 REMARK 465 GLU B 205 REMARK 465 VAL B 206 REMARK 465 SER B 207 REMARK 465 ALA B 208 REMARK 465 LYS B 209 REMARK 465 LYS B 210 REMARK 465 PHE B 211 REMARK 465 PHE B 212 REMARK 465 THR B 213 REMARK 465 PRO B 214 REMARK 465 GLU B 215 REMARK 465 MET C 1 REMARK 465 THR C 189 REMARK 465 THR C 190 REMARK 465 ASP C 191 REMARK 465 MET C 192 REMARK 465 GLY C 193 REMARK 465 LYS C 194 REMARK 465 GLY C 195 REMARK 465 GLY C 196 REMARK 465 GLU C 197 REMARK 465 ARG C 198 REMARK 465 ALA C 199 REMARK 465 PHE C 200 REMARK 465 THR C 201 REMARK 465 ALA C 202 REMARK 465 VAL C 203 REMARK 465 ASP C 204 REMARK 465 GLU C 205 REMARK 465 VAL C 206 REMARK 465 SER C 207 REMARK 465 ALA C 208 REMARK 465 LYS C 209 REMARK 465 LYS C 210 REMARK 465 PHE C 211 REMARK 465 PHE C 212 REMARK 465 THR C 213 REMARK 465 MET D 1 REMARK 465 THR D 189 REMARK 465 THR D 190 REMARK 465 ASP D 191 REMARK 465 MET D 192 REMARK 465 GLY D 193 REMARK 465 LYS D 194 REMARK 465 GLY D 195 REMARK 465 GLY D 196 REMARK 465 GLU D 197 REMARK 465 ARG D 198 REMARK 465 ALA D 199 REMARK 465 PHE D 200 REMARK 465 THR D 201 REMARK 465 ALA D 202 REMARK 465 VAL D 203 REMARK 465 ASP D 204 REMARK 465 GLU D 205 REMARK 465 VAL D 206 REMARK 465 SER D 207 REMARK 465 ALA D 208 REMARK 465 LYS D 209 REMARK 465 LYS D 210 REMARK 465 PHE D 211 REMARK 465 PHE D 212 REMARK 465 THR D 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 138 N SER B 138 CA 0.173 REMARK 500 SER B 139 CA SER B 139 CB -0.207 REMARK 500 ALA B 154 CA ALA B 154 C 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 138 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 138 -151.29 -108.86 REMARK 500 ASN A 145 21.26 -143.24 REMARK 500 SER A 153 -129.05 44.75 REMARK 500 SER B 138 -145.94 -114.10 REMARK 500 ASN B 145 14.66 -140.53 REMARK 500 SER B 153 -131.97 45.86 REMARK 500 ALA C 40 45.57 -77.82 REMARK 500 ALA C 90 71.32 -157.09 REMARK 500 SER C 138 -153.34 -109.16 REMARK 500 SER C 153 -131.47 49.78 REMARK 500 ALA D 90 74.42 -159.95 REMARK 500 SER D 138 -153.99 -110.64 REMARK 500 SER D 153 -131.92 51.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 585 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 587 DISTANCE = 10.31 ANGSTROMS REMARK 525 HOH B 588 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH C 524 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH C 525 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH C 526 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH C 527 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH C 528 DISTANCE = 9.77 ANGSTROMS REMARK 525 HOH C 529 DISTANCE = 13.60 ANGSTROMS REMARK 525 HOH D 531 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH D 532 DISTANCE = 7.35 ANGSTROMS DBREF1 7XWK A 1 250 UNP A0A888VSF1_PICGM DBREF2 7XWK A A0A888VSF1 1 250 DBREF1 7XWK B 1 250 UNP A0A888VSF1_PICGM DBREF2 7XWK B A0A888VSF1 1 250 DBREF1 7XWK C 1 250 UNP A0A888VSF1_PICGM DBREF2 7XWK C A0A888VSF1 1 250 DBREF1 7XWK D 1 250 UNP A0A888VSF1_PICGM DBREF2 7XWK D A0A888VSF1 1 250 SEQADV 7XWK PHE A 155 UNP A0A888VSF TYR 155 ENGINEERED MUTATION SEQADV 7XWK PHE B 155 UNP A0A888VSF TYR 155 ENGINEERED MUTATION SEQADV 7XWK PHE C 155 UNP A0A888VSF TYR 155 ENGINEERED MUTATION SEQADV 7XWK PHE D 155 UNP A0A888VSF TYR 155 ENGINEERED MUTATION SEQRES 1 A 250 MET GLU GLN THR TYR PHE ILE SER GLY ALA ASN ARG GLY SEQRES 2 A 250 ILE GLY PHE SER VAL VAL GLN ARG LEU ALA ALA LYS SER SEQRES 3 A 250 GLY VAL LYS VAL ILE ALA THR ALA ARG ASP PRO ALA SER SEQRES 4 A 250 ALA THR ALA LEU ASN GLU LEU ALA LYS GLU ASN PRO GLN SEQRES 5 A 250 VAL LYS VAL VAL GLN LEU ASP ILE SER ASP GLU GLU SER SEQRES 6 A 250 ILE LYS LYS ILE ALA LYS ASN VAL SER GLN TYR THR ASP SEQRES 7 A 250 SER ILE ASP VAL PHE VAL SER ASN ALA ALA ILE ALA LYS SEQRES 8 A 250 SER PHE GLY PRO LEU LEU ASN THR PRO ARG GLU GLN TRP SEQRES 9 A 250 ILE GLU HIS PHE PHE THR ASN VAL LEU GLY PRO ILE ARG SEQRES 10 A 250 LEU PHE GLN GLU LEU TYR PRO LEU ILE LYS LYS GLY THR SEQRES 11 A 250 GLN LYS LYS VAL PHE PHE ILE SER SER ASN ALA GLY SER SEQRES 12 A 250 LEU ASN LEU ASP PHE GLY LEU ASP PHE SER ALA PHE GLY SEQRES 13 A 250 GLN SER LYS ALA ALA LEU ASN TYR SER THR LYS GLU LEU SEQRES 14 A 250 ALA ARG GLN LEU LYS PRO GLU ASN PHE ILE VAL ALA ALA SEQRES 15 A 250 VAL HIS PRO GLY VAL VAL THR THR ASP MET GLY LYS GLY SEQRES 16 A 250 GLY GLU ARG ALA PHE THR ALA VAL ASP GLU VAL SER ALA SEQRES 17 A 250 LYS LYS PHE PHE THR PRO GLU THR LYS ILE THR PRO GLU SEQRES 18 A 250 GLU SER ALA ALA ALA LEU CYS LYS LEU PHE GLU SER LEU SEQRES 19 A 250 ASN THR THR GLY LYS TYR LEU SER TYR ASP GLY THR GLU SEQRES 20 A 250 LEU PRO TRP SEQRES 1 B 250 MET GLU GLN THR TYR PHE ILE SER GLY ALA ASN ARG GLY SEQRES 2 B 250 ILE GLY PHE SER VAL VAL GLN ARG LEU ALA ALA LYS SER SEQRES 3 B 250 GLY VAL LYS VAL ILE ALA THR ALA ARG ASP PRO ALA SER SEQRES 4 B 250 ALA THR ALA LEU ASN GLU LEU ALA LYS GLU ASN PRO GLN SEQRES 5 B 250 VAL LYS VAL VAL GLN LEU ASP ILE SER ASP GLU GLU SER SEQRES 6 B 250 ILE LYS LYS ILE ALA LYS ASN VAL SER GLN TYR THR ASP SEQRES 7 B 250 SER ILE ASP VAL PHE VAL SER ASN ALA ALA ILE ALA LYS SEQRES 8 B 250 SER PHE GLY PRO LEU LEU ASN THR PRO ARG GLU GLN TRP SEQRES 9 B 250 ILE GLU HIS PHE PHE THR ASN VAL LEU GLY PRO ILE ARG SEQRES 10 B 250 LEU PHE GLN GLU LEU TYR PRO LEU ILE LYS LYS GLY THR SEQRES 11 B 250 GLN LYS LYS VAL PHE PHE ILE SER SER ASN ALA GLY SER SEQRES 12 B 250 LEU ASN LEU ASP PHE GLY LEU ASP PHE SER ALA PHE GLY SEQRES 13 B 250 GLN SER LYS ALA ALA LEU ASN TYR SER THR LYS GLU LEU SEQRES 14 B 250 ALA ARG GLN LEU LYS PRO GLU ASN PHE ILE VAL ALA ALA SEQRES 15 B 250 VAL HIS PRO GLY VAL VAL THR THR ASP MET GLY LYS GLY SEQRES 16 B 250 GLY GLU ARG ALA PHE THR ALA VAL ASP GLU VAL SER ALA SEQRES 17 B 250 LYS LYS PHE PHE THR PRO GLU THR LYS ILE THR PRO GLU SEQRES 18 B 250 GLU SER ALA ALA ALA LEU CYS LYS LEU PHE GLU SER LEU SEQRES 19 B 250 ASN THR THR GLY LYS TYR LEU SER TYR ASP GLY THR GLU SEQRES 20 B 250 LEU PRO TRP SEQRES 1 C 250 MET GLU GLN THR TYR PHE ILE SER GLY ALA ASN ARG GLY SEQRES 2 C 250 ILE GLY PHE SER VAL VAL GLN ARG LEU ALA ALA LYS SER SEQRES 3 C 250 GLY VAL LYS VAL ILE ALA THR ALA ARG ASP PRO ALA SER SEQRES 4 C 250 ALA THR ALA LEU ASN GLU LEU ALA LYS GLU ASN PRO GLN SEQRES 5 C 250 VAL LYS VAL VAL GLN LEU ASP ILE SER ASP GLU GLU SER SEQRES 6 C 250 ILE LYS LYS ILE ALA LYS ASN VAL SER GLN TYR THR ASP SEQRES 7 C 250 SER ILE ASP VAL PHE VAL SER ASN ALA ALA ILE ALA LYS SEQRES 8 C 250 SER PHE GLY PRO LEU LEU ASN THR PRO ARG GLU GLN TRP SEQRES 9 C 250 ILE GLU HIS PHE PHE THR ASN VAL LEU GLY PRO ILE ARG SEQRES 10 C 250 LEU PHE GLN GLU LEU TYR PRO LEU ILE LYS LYS GLY THR SEQRES 11 C 250 GLN LYS LYS VAL PHE PHE ILE SER SER ASN ALA GLY SER SEQRES 12 C 250 LEU ASN LEU ASP PHE GLY LEU ASP PHE SER ALA PHE GLY SEQRES 13 C 250 GLN SER LYS ALA ALA LEU ASN TYR SER THR LYS GLU LEU SEQRES 14 C 250 ALA ARG GLN LEU LYS PRO GLU ASN PHE ILE VAL ALA ALA SEQRES 15 C 250 VAL HIS PRO GLY VAL VAL THR THR ASP MET GLY LYS GLY SEQRES 16 C 250 GLY GLU ARG ALA PHE THR ALA VAL ASP GLU VAL SER ALA SEQRES 17 C 250 LYS LYS PHE PHE THR PRO GLU THR LYS ILE THR PRO GLU SEQRES 18 C 250 GLU SER ALA ALA ALA LEU CYS LYS LEU PHE GLU SER LEU SEQRES 19 C 250 ASN THR THR GLY LYS TYR LEU SER TYR ASP GLY THR GLU SEQRES 20 C 250 LEU PRO TRP SEQRES 1 D 250 MET GLU GLN THR TYR PHE ILE SER GLY ALA ASN ARG GLY SEQRES 2 D 250 ILE GLY PHE SER VAL VAL GLN ARG LEU ALA ALA LYS SER SEQRES 3 D 250 GLY VAL LYS VAL ILE ALA THR ALA ARG ASP PRO ALA SER SEQRES 4 D 250 ALA THR ALA LEU ASN GLU LEU ALA LYS GLU ASN PRO GLN SEQRES 5 D 250 VAL LYS VAL VAL GLN LEU ASP ILE SER ASP GLU GLU SER SEQRES 6 D 250 ILE LYS LYS ILE ALA LYS ASN VAL SER GLN TYR THR ASP SEQRES 7 D 250 SER ILE ASP VAL PHE VAL SER ASN ALA ALA ILE ALA LYS SEQRES 8 D 250 SER PHE GLY PRO LEU LEU ASN THR PRO ARG GLU GLN TRP SEQRES 9 D 250 ILE GLU HIS PHE PHE THR ASN VAL LEU GLY PRO ILE ARG SEQRES 10 D 250 LEU PHE GLN GLU LEU TYR PRO LEU ILE LYS LYS GLY THR SEQRES 11 D 250 GLN LYS LYS VAL PHE PHE ILE SER SER ASN ALA GLY SER SEQRES 12 D 250 LEU ASN LEU ASP PHE GLY LEU ASP PHE SER ALA PHE GLY SEQRES 13 D 250 GLN SER LYS ALA ALA LEU ASN TYR SER THR LYS GLU LEU SEQRES 14 D 250 ALA ARG GLN LEU LYS PRO GLU ASN PHE ILE VAL ALA ALA SEQRES 15 D 250 VAL HIS PRO GLY VAL VAL THR THR ASP MET GLY LYS GLY SEQRES 16 D 250 GLY GLU ARG ALA PHE THR ALA VAL ASP GLU VAL SER ALA SEQRES 17 D 250 LYS LYS PHE PHE THR PRO GLU THR LYS ILE THR PRO GLU SEQRES 18 D 250 GLU SER ALA ALA ALA LEU CYS LYS LEU PHE GLU SER LEU SEQRES 19 D 250 ASN THR THR GLY LYS TYR LEU SER TYR ASP GLY THR GLU SEQRES 20 D 250 LEU PRO TRP HET NDP A 301 48 HET I8L A 302 11 HET NDP B 301 48 HET I8L B 302 11 HET NDP C 301 48 HET I8L C 302 11 HET I8L C 303 11 HET NDP D 301 48 HET I8L D 302 11 HET I8L D 303 11 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM I8L (4~{S})-4-OXIDANYL-4,6-DIHYDROFURO[3,2-C]PYRAN-2-ONE FORMUL 5 NDP 4(C21 H30 N7 O17 P3) FORMUL 6 I8L 6(C7 H6 O4) FORMUL 15 HOH *636(H2 O) HELIX 1 AA1 ARG A 12 LYS A 25 1 14 HELIX 2 AA2 ASP A 36 SER A 39 5 4 HELIX 3 AA3 ALA A 40 ASN A 50 1 11 HELIX 4 AA4 ASP A 62 GLN A 75 1 14 HELIX 5 AA5 PRO A 95 THR A 99 5 5 HELIX 6 AA6 PRO A 100 VAL A 112 1 13 HELIX 7 AA7 VAL A 112 LYS A 128 1 17 HELIX 8 AA8 SER A 139 SER A 143 5 5 HELIX 9 AA9 PHE A 152 LYS A 174 1 23 HELIX 10 AB1 PRO A 175 ASN A 177 5 3 HELIX 11 AB2 THR A 219 LEU A 234 1 16 HELIX 12 AB3 ARG B 12 LYS B 25 1 14 HELIX 13 AB4 ASP B 36 SER B 39 5 4 HELIX 14 AB5 ALA B 40 ASN B 50 1 11 HELIX 15 AB6 ASP B 62 LYS B 67 1 6 HELIX 16 AB7 LYS B 68 GLN B 75 1 8 HELIX 17 AB8 PRO B 95 THR B 99 5 5 HELIX 18 AB9 PRO B 100 VAL B 112 1 13 HELIX 19 AC1 VAL B 112 LYS B 128 1 17 HELIX 20 AC2 SER B 139 SER B 143 5 5 HELIX 21 AC3 PHE B 152 LYS B 174 1 23 HELIX 22 AC4 PRO B 175 ASN B 177 5 3 HELIX 23 AC5 THR B 219 LEU B 234 1 16 HELIX 24 AC6 ARG C 12 ALA C 23 1 12 HELIX 25 AC7 ASP C 36 SER C 39 5 4 HELIX 26 AC8 ALA C 40 ASN C 50 1 11 HELIX 27 AC9 ASP C 62 LYS C 67 1 6 HELIX 28 AD1 LYS C 68 GLN C 75 1 8 HELIX 29 AD2 PRO C 100 VAL C 112 1 13 HELIX 30 AD3 VAL C 112 LYS C 128 1 17 HELIX 31 AD4 SER C 139 SER C 143 5 5 HELIX 32 AD5 PHE C 152 LYS C 174 1 23 HELIX 33 AD6 PRO C 175 ASN C 177 5 3 HELIX 34 AD7 THR C 219 LEU C 234 1 16 HELIX 35 AD8 ARG D 12 LYS D 25 1 14 HELIX 36 AD9 ASP D 36 SER D 39 5 4 HELIX 37 AE1 ALA D 40 ASN D 50 1 11 HELIX 38 AE2 ASP D 62 LYS D 67 1 6 HELIX 39 AE3 LYS D 68 GLN D 75 1 8 HELIX 40 AE4 PRO D 100 VAL D 112 1 13 HELIX 41 AE5 VAL D 112 GLY D 129 1 18 HELIX 42 AE6 SER D 139 SER D 143 5 5 HELIX 43 AE7 PHE D 152 LYS D 174 1 23 HELIX 44 AE8 PRO D 175 ASN D 177 5 3 HELIX 45 AE9 THR D 219 LEU D 234 1 16 SHEET 1 AA1 7 VAL A 53 GLN A 57 0 SHEET 2 AA1 7 VAL A 28 ALA A 34 1 N ALA A 32 O LYS A 54 SHEET 3 AA1 7 GLN A 3 ILE A 7 1 N TYR A 5 O ILE A 31 SHEET 4 AA1 7 VAL A 82 SER A 85 1 O VAL A 82 N PHE A 6 SHEET 5 AA1 7 LYS A 133 ILE A 137 1 O PHE A 135 N PHE A 83 SHEET 6 AA1 7 ILE A 179 HIS A 184 1 O ILE A 179 N VAL A 134 SHEET 7 AA1 7 LYS A 239 SER A 242 1 O LEU A 241 N ALA A 182 SHEET 1 AA2 7 VAL B 53 GLN B 57 0 SHEET 2 AA2 7 VAL B 28 ALA B 34 1 N ALA B 32 O LYS B 54 SHEET 3 AA2 7 GLN B 3 ILE B 7 1 N GLN B 3 O LYS B 29 SHEET 4 AA2 7 VAL B 82 SER B 85 1 O VAL B 84 N PHE B 6 SHEET 5 AA2 7 LYS B 133 ILE B 137 1 O PHE B 135 N PHE B 83 SHEET 6 AA2 7 ILE B 179 HIS B 184 1 O ILE B 179 N VAL B 134 SHEET 7 AA2 7 LYS B 239 SER B 242 1 O LEU B 241 N ALA B 182 SHEET 1 AA3 7 VAL C 53 GLN C 57 0 SHEET 2 AA3 7 LYS C 29 ALA C 34 1 N VAL C 30 O LYS C 54 SHEET 3 AA3 7 THR C 4 ILE C 7 1 N TYR C 5 O ILE C 31 SHEET 4 AA3 7 VAL C 82 SER C 85 1 O VAL C 82 N PHE C 6 SHEET 5 AA3 7 LYS C 133 ILE C 137 1 O ILE C 137 N SER C 85 SHEET 6 AA3 7 ILE C 179 HIS C 184 1 O ILE C 179 N VAL C 134 SHEET 7 AA3 7 LYS C 239 SER C 242 1 O LEU C 241 N ALA C 182 SHEET 1 AA4 7 VAL D 53 GLN D 57 0 SHEET 2 AA4 7 VAL D 28 ALA D 34 1 N VAL D 30 O LYS D 54 SHEET 3 AA4 7 GLN D 3 ILE D 7 1 N TYR D 5 O LYS D 29 SHEET 4 AA4 7 VAL D 82 SER D 85 1 O VAL D 84 N PHE D 6 SHEET 5 AA4 7 LYS D 133 ILE D 137 1 O ILE D 137 N SER D 85 SHEET 6 AA4 7 ILE D 179 HIS D 184 1 O ILE D 179 N VAL D 134 SHEET 7 AA4 7 LYS D 239 SER D 242 1 O LEU D 241 N ALA D 182 CRYST1 85.333 65.090 89.494 90.00 107.37 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011719 0.000000 0.003666 0.00000 SCALE2 0.000000 0.015363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011708 0.00000