HEADER VIRAL PROTEIN 27-MAY-22 7XWS TITLE CRYSTAL STRUCTURE OF WILD TYPE CYPOVIRUS POLYHEDRA PRODUCED BY CELL- TITLE 2 FREE PROTEIN SYNTHESIS WITH SMALL VOLUME COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-POLYHEDRIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYPOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 110829; SOURCE 4 EXPRESSION_SYSTEM: TRITICUM AESTIVUM; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4565 KEYWDS CELL-FREE CRYSTALLIZATION, IN CELL CRYSTAL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ABE,J.TANAKA,M.KOJIMA,K.HIRATA,K.YAMASHITA,T.UENO REVDAT 2 29-NOV-23 7XWS 1 REMARK REVDAT 1 01-FEB-23 7XWS 0 JRNL AUTH S.ABE,J.TANAKA,M.KOJIMA,S.KANAMARU,K.HIRATA,K.YAMASHITA, JRNL AUTH 2 A.KOBAYASHI,T.UENO JRNL TITL CELL-FREE PROTEIN CRYSTALLIZATION FOR NANOCRYSTAL STRUCTURE JRNL TITL 2 DETERMINATION. JRNL REF SCI REP V. 12 16031 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 36192567 JRNL DOI 10.1038/S41598-022-19681-9 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1372 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2066 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1768 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2804 ; 1.442 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4108 ; 1.340 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 7.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;34.904 ;22.269 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;12.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2389 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 473 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 372 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 182 ; 0.235 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 985 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 991 ; 1.177 ; 2.108 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 990 ; 1.172 ; 2.108 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1237 ; 1.640 ; 3.154 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1238 ; 1.639 ; 3.155 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1074 ; 1.603 ; 2.306 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1071 ; 1.602 ; 2.305 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1566 ; 2.426 ; 3.384 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1565 ; 2.422 ; 3.383 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 447.7 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GQM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 24.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CELL-FREE CRYSTALLIZATION, SMALL REMARK 280 TUBES, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.80000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 55540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 127820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -274.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 205 O HOH A 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -49.50 75.74 REMARK 500 SER A 131 40.12 72.96 REMARK 500 GLU A 135 -58.00 74.46 REMARK 500 LYS A 184 131.12 -30.35 REMARK 500 TYR A 224 -61.35 -122.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XWS A 2 248 UNP P11041 PYHD_CPVBM 2 248 SEQRES 1 A 247 ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG GLY SEQRES 2 A 247 ARG GLU GLN ARG LEU PHE ASN SER GLU GLN TYR ASN TYR SEQRES 3 A 247 ASN ASN SER LEU ASN GLY GLU VAL SER VAL TRP VAL TYR SEQRES 4 A 247 ALA TYR TYR SER ASP GLY SER VAL LEU VAL ILE ASN LYS SEQRES 5 A 247 ASN SER GLN TYR LYS VAL GLY ILE SER GLU THR PHE LYS SEQRES 6 A 247 ALA LEU LYS GLU TYR ARG GLU GLY GLN HIS ASN ASP SER SEQRES 7 A 247 TYR ASP GLU TYR GLU VAL ASN GLN SER ILE TYR TYR PRO SEQRES 8 A 247 ASN GLY GLY ASP ALA ARG LYS PHE HIS SER ASN ALA LYS SEQRES 9 A 247 PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER VAL ASN SEQRES 10 A 247 VAL ARG THR ILE LYS MET ALA LYS GLY ASN ALA VAL SER SEQRES 11 A 247 VAL PRO ASP GLU TYR LEU GLN ARG SER HIS PRO TRP GLU SEQRES 12 A 247 ALA THR GLY ILE LYS TYR ARG LYS ILE LYS ARG ASP GLY SEQRES 13 A 247 GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU PRO HIS SEQRES 14 A 247 GLU TYR ASN SER ILE SER LEU ALA VAL SER GLY VAL HIS SEQRES 15 A 247 LYS ASN PRO SER SER TYR ASN VAL GLY SER ALA HIS ASN SEQRES 16 A 247 VAL MET ASP VAL PHE GLN SER CYS ASP LEU ALA LEU ARG SEQRES 17 A 247 PHE CYS ASN ARG TYR TRP ALA GLU LEU GLU LEU VAL ASN SEQRES 18 A 247 HIS TYR ILE SER PRO ASN ALA TYR PRO TYR LEU ASP ILE SEQRES 19 A 247 ASN ASN HIS SER TYR GLY VAL ALA LEU SER ASN ARG GLN HET ACE A 301 3 HET CL A 302 1 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION FORMUL 2 ACE C2 H4 O FORMUL 3 CL CL 1- FORMUL 4 HOH *119(H2 O) HELIX 1 AA1 ASP A 11 SER A 30 1 20 HELIX 2 AA2 THR A 64 LYS A 69 1 6 HELIX 3 AA3 ASP A 78 TYR A 91 1 14 HELIX 4 AA4 TYR A 136 SER A 140 5 5 HELIX 5 AA5 THR A 146 TYR A 150 5 5 HELIX 6 AA6 ASN A 196 ALA A 207 1 12 HELIX 7 AA7 ALA A 216 TYR A 224 1 9 SHEET 1 AA1 6 ARG A 151 ARG A 155 0 SHEET 2 AA1 6 GLU A 158 GLU A 167 -1 O SER A 163 N ARG A 151 SHEET 3 AA1 6 ALA A 108 PHE A 113 -1 N ILE A 111 O HIS A 164 SHEET 4 AA1 6 GLU A 34 TYR A 42 -1 N TYR A 40 O GLN A 110 SHEET 5 AA1 6 VAL A 48 GLN A 56 -1 O ILE A 51 N VAL A 39 SHEET 6 AA1 6 LEU A 208 TYR A 214 -1 O PHE A 210 N ASN A 52 SHEET 1 AA2 3 LYS A 58 GLU A 63 0 SHEET 2 AA2 3 SER A 176 HIS A 183 -1 O LEU A 177 N GLU A 63 SHEET 3 AA2 3 VAL A 117 GLY A 127 -1 N ASN A 118 O VAL A 182 SHEET 1 AA3 2 TYR A 232 LEU A 233 0 SHEET 2 AA3 2 SER A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 LINK N ALA A 2 C ACE A 301 1555 1555 1.35 CRYST1 103.600 103.600 103.600 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009653 0.00000