HEADER LYASE 27-MAY-22 7XWV TITLE FERULOYL-COA HYDRATASE/LYASE COMPLEXED WITH VANILLIN AND COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERULOYL-COA HYDRATASE/LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 GENE: FERB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS FERULOYL-COA HYDRATASE/LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SEOK,K.-J.KIM REVDAT 2 29-NOV-23 7XWV 1 REMARK REVDAT 1 18-JAN-23 7XWV 0 JRNL AUTH J.SEOK,H.SEO,J.HONG,K.J.KIM JRNL TITL PRODUCTION OF VARIOUS PHENOLIC ALDEHYDE COMPOUNDS USING THE JRNL TITL 2 4CL-FCHL BIOSYNTHESIS PLATFORM. JRNL REF INT.J.BIOL.MACROMOL. V. 226 608 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 36521700 JRNL DOI 10.1016/J.IJBIOMAC.2022.12.075 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 67774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3561 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.071 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4172 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3863 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5652 ; 1.632 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8840 ; 1.375 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 7.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;31.210 ;21.639 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;15.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.573 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4723 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1035 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7XWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2J5I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE DIBASIC, REMARK 280 IMIDAZOLE/HYDROCHLORIC ACID, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 66.23550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.24108 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.51100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 66.23550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.24108 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.51100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 66.23550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.24108 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.51100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 66.23550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.24108 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.51100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 66.23550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.24108 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.51100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 66.23550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.24108 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.51100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.48217 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 161.02200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.48217 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 161.02200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.48217 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 161.02200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.48217 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 161.02200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.48217 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 161.02200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.48217 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 161.02200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 37630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 66.23550 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -114.72325 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 132.47100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 LYS A 253 REMARK 465 SER A 254 REMARK 465 ASP A 255 REMARK 465 GLY A 256 REMARK 465 ARG A 257 REMARK 465 HIS A 258 REMARK 465 VAL A 259 REMARK 465 ALA A 260 REMARK 465 MET A 261 REMARK 465 LYS A 262 REMARK 465 GLN A 263 REMARK 465 PHE A 264 REMARK 465 LEU A 265 REMARK 465 ASP A 266 REMARK 465 ASP A 267 REMARK 465 LYS A 268 REMARK 465 THR A 269 REMARK 465 PHE A 270 REMARK 465 LYS A 271 REMARK 465 PRO A 272 REMARK 465 GLY A 273 REMARK 465 LEU A 274 REMARK 465 GLY A 275 REMARK 465 HIS A 276 REMARK 465 TYR A 277 REMARK 465 ASP A 278 REMARK 465 LYS A 279 REMARK 465 THR A 280 REMARK 465 LYS A 281 REMARK 465 THR A 282 REMARK 465 GLU A 283 REMARK 465 VAL A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 VAL B 8 REMARK 465 LYS B 253 REMARK 465 SER B 254 REMARK 465 ASP B 255 REMARK 465 GLY B 256 REMARK 465 ARG B 257 REMARK 465 HIS B 258 REMARK 465 VAL B 259 REMARK 465 ALA B 260 REMARK 465 MET B 261 REMARK 465 LYS B 262 REMARK 465 GLN B 263 REMARK 465 PHE B 264 REMARK 465 LEU B 265 REMARK 465 ASP B 266 REMARK 465 ASP B 267 REMARK 465 LYS B 268 REMARK 465 THR B 269 REMARK 465 PHE B 270 REMARK 465 LYS B 271 REMARK 465 PRO B 272 REMARK 465 GLY B 273 REMARK 465 LEU B 274 REMARK 465 GLY B 275 REMARK 465 HIS B 276 REMARK 465 TYR B 277 REMARK 465 ASP B 278 REMARK 465 LYS B 279 REMARK 465 THR B 280 REMARK 465 LYS B 281 REMARK 465 THR B 282 REMARK 465 GLU B 283 REMARK 465 VAL B 284 REMARK 465 LEU B 285 REMARK 465 GLU B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 145 O HOH A 401 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 476 O HOH B 476 2545 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 8.78 80.36 REMARK 500 PHE A 80 -65.06 -96.59 REMARK 500 PRO A 153 95.19 -65.01 REMARK 500 PHE B 80 -65.97 -96.30 REMARK 500 PRO B 153 95.71 -68.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XWV A 1 284 UNP Q8RR28 Q8RR28_SPHPI 1 284 DBREF 7XWV B 1 284 UNP Q8RR28 Q8RR28_SPHPI 1 284 SEQADV 7XWV LEU A 285 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV GLU A 286 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS A 287 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS A 288 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS A 289 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS A 290 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS A 291 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS A 292 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV LEU B 285 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV GLU B 286 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS B 287 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS B 288 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS B 289 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS B 290 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS B 291 UNP Q8RR28 EXPRESSION TAG SEQADV 7XWV HIS B 292 UNP Q8RR28 EXPRESSION TAG SEQRES 1 A 292 MET SER GLU GLU ASN LYS PRO VAL GLU ARG GLU GLU ASP SEQRES 2 A 292 THR VAL ARG TYR GLU ILE VAL ASN ASN VAL ALA TRP VAL SEQRES 3 A 292 TYR TYR ASN ARG PRO THR LYS ARG ASN ALA GLN SER PRO SEQRES 4 A 292 LYS LEU ASN ARG GLN MET LEU LYS VAL LEU THR GLU LEU SEQRES 5 A 292 GLU PHE ARG ASP ASP VAL GLY VAL LEU VAL LEU GLY GLY SEQRES 6 A 292 GLU GLY PRO ALA TRP CYS ALA GLY MET ASP LEU LYS GLU SEQRES 7 A 292 TYR PHE ARG GLU THR GLU ALA GLU GLY LEU ALA GLY THR SEQRES 8 A 292 ARG LYS ALA GLN ARG GLU ALA TYR THR TRP TRP GLU ARG SEQRES 9 A 292 LEU ARG TRP TYR GLN LYS PRO THR ILE ALA MET VAL HIS SEQRES 10 A 292 GLY TRP CYS PHE GLY GLY ALA TYR GLY PRO LEU PHE ALA SEQRES 11 A 292 CYS ASP LEU ALA PHE ALA ALA ASP GLU ALA GLN PHE GLY SEQRES 12 A 292 LEU SER GLU VAL ASN TRP GLY ILE LEU PRO GLY GLY GLY SEQRES 13 A 292 ALA THR LYS VAL ALA VAL ASP LEU MET PRO MET ARG VAL SEQRES 14 A 292 ALA MET TYR HIS ALA MET MET GLY GLU ASN LEU SER GLY SEQRES 15 A 292 GLN ASP ALA ALA ARG TYR ASN LEU VAL ASN GLU SER MET SEQRES 16 A 292 PRO ALA ASP GLN LEU LYS ALA ARG VAL LYS GLN VAL ALA SEQRES 17 A 292 GLU THR LEU ILE GLN LYS ASN TRP ALA THR VAL LYS TYR SEQRES 18 A 292 THR LYS ASP ALA VAL ARG ARG VAL LYS GLU MET THR TYR SEQRES 19 A 292 ASP ASN ALA GLU ASP TYR LEU ILE ARG LEU GLN GLU GLY SEQRES 20 A 292 LEU ASN TRP PHE ASP LYS SER ASP GLY ARG HIS VAL ALA SEQRES 21 A 292 MET LYS GLN PHE LEU ASP ASP LYS THR PHE LYS PRO GLY SEQRES 22 A 292 LEU GLY HIS TYR ASP LYS THR LYS THR GLU VAL LEU GLU SEQRES 23 A 292 HIS HIS HIS HIS HIS HIS SEQRES 1 B 292 MET SER GLU GLU ASN LYS PRO VAL GLU ARG GLU GLU ASP SEQRES 2 B 292 THR VAL ARG TYR GLU ILE VAL ASN ASN VAL ALA TRP VAL SEQRES 3 B 292 TYR TYR ASN ARG PRO THR LYS ARG ASN ALA GLN SER PRO SEQRES 4 B 292 LYS LEU ASN ARG GLN MET LEU LYS VAL LEU THR GLU LEU SEQRES 5 B 292 GLU PHE ARG ASP ASP VAL GLY VAL LEU VAL LEU GLY GLY SEQRES 6 B 292 GLU GLY PRO ALA TRP CYS ALA GLY MET ASP LEU LYS GLU SEQRES 7 B 292 TYR PHE ARG GLU THR GLU ALA GLU GLY LEU ALA GLY THR SEQRES 8 B 292 ARG LYS ALA GLN ARG GLU ALA TYR THR TRP TRP GLU ARG SEQRES 9 B 292 LEU ARG TRP TYR GLN LYS PRO THR ILE ALA MET VAL HIS SEQRES 10 B 292 GLY TRP CYS PHE GLY GLY ALA TYR GLY PRO LEU PHE ALA SEQRES 11 B 292 CYS ASP LEU ALA PHE ALA ALA ASP GLU ALA GLN PHE GLY SEQRES 12 B 292 LEU SER GLU VAL ASN TRP GLY ILE LEU PRO GLY GLY GLY SEQRES 13 B 292 ALA THR LYS VAL ALA VAL ASP LEU MET PRO MET ARG VAL SEQRES 14 B 292 ALA MET TYR HIS ALA MET MET GLY GLU ASN LEU SER GLY SEQRES 15 B 292 GLN ASP ALA ALA ARG TYR ASN LEU VAL ASN GLU SER MET SEQRES 16 B 292 PRO ALA ASP GLN LEU LYS ALA ARG VAL LYS GLN VAL ALA SEQRES 17 B 292 GLU THR LEU ILE GLN LYS ASN TRP ALA THR VAL LYS TYR SEQRES 18 B 292 THR LYS ASP ALA VAL ARG ARG VAL LYS GLU MET THR TYR SEQRES 19 B 292 ASP ASN ALA GLU ASP TYR LEU ILE ARG LEU GLN GLU GLY SEQRES 20 B 292 LEU ASN TRP PHE ASP LYS SER ASP GLY ARG HIS VAL ALA SEQRES 21 B 292 MET LYS GLN PHE LEU ASP ASP LYS THR PHE LYS PRO GLY SEQRES 22 B 292 LEU GLY HIS TYR ASP LYS THR LYS THR GLU VAL LEU GLU SEQRES 23 B 292 HIS HIS HIS HIS HIS HIS HET V55 A 301 11 HET GOL A 302 6 HET GOL A 303 6 HET COA A 304 48 HET V55 B 301 11 HET GOL B 302 12 HET GOL B 303 6 HET IMD B 304 5 HET COA B 305 48 HETNAM V55 4-HYDROXY-3-METHOXYBENZALDEHYDE HETNAM GOL GLYCEROL HETNAM COA COENZYME A HETNAM IMD IMIDAZOLE HETSYN V55 P-VANILLIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 V55 2(C8 H8 O3) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 6 COA 2(C21 H36 N7 O16 P3 S) FORMUL 10 IMD C3 H5 N2 1+ FORMUL 12 HOH *157(H2 O) HELIX 1 AA1 ARG A 10 ASP A 13 5 4 HELIX 2 AA2 ARG A 30 ARG A 34 5 5 HELIX 3 AA3 SER A 38 GLU A 53 1 16 HELIX 4 AA4 ASP A 75 PHE A 80 1 6 HELIX 5 AA5 PHE A 80 GLU A 86 1 7 HELIX 6 AA6 GLU A 86 TRP A 107 1 22 HELIX 7 AA7 ALA A 124 CYS A 131 1 8 HELIX 8 AA8 SER A 145 GLY A 150 5 6 HELIX 9 AA9 GLY A 156 MET A 165 1 10 HELIX 10 AB1 PRO A 166 GLY A 177 1 12 HELIX 11 AB2 GLY A 182 TYR A 188 1 7 HELIX 12 AB3 PRO A 196 ASP A 198 5 3 HELIX 13 AB4 GLN A 199 LYS A 214 1 16 HELIX 14 AB5 ASN A 215 LYS A 230 1 16 HELIX 15 AB6 THR A 233 ASP A 252 1 20 HELIX 16 AB7 ARG B 10 ASP B 13 5 4 HELIX 17 AB8 ARG B 30 ARG B 34 5 5 HELIX 18 AB9 SER B 38 PHE B 54 1 17 HELIX 19 AC1 PHE B 80 ALA B 85 1 6 HELIX 20 AC2 GLU B 86 TRP B 107 1 22 HELIX 21 AC3 ALA B 124 CYS B 131 1 8 HELIX 22 AC4 LEU B 144 GLY B 150 5 7 HELIX 23 AC5 GLY B 156 MET B 165 1 10 HELIX 24 AC6 PRO B 166 GLY B 177 1 12 HELIX 25 AC7 GLY B 182 TYR B 188 1 7 HELIX 26 AC8 PRO B 196 ASP B 198 5 3 HELIX 27 AC9 GLN B 199 GLN B 213 1 15 HELIX 28 AD1 ASN B 215 LYS B 230 1 16 HELIX 29 AD2 THR B 233 ASP B 252 1 20 SHEET 1 AA1 6 VAL A 15 VAL A 20 0 SHEET 2 AA1 6 VAL A 23 TYR A 28 -1 O TYR A 27 N ARG A 16 SHEET 3 AA1 6 VAL A 60 GLY A 65 1 O GLY A 64 N VAL A 26 SHEET 4 AA1 6 THR A 112 VAL A 116 1 O ILE A 113 N LEU A 63 SHEET 5 AA1 6 LEU A 133 ALA A 137 1 O PHE A 135 N ALA A 114 SHEET 6 AA1 6 GLU A 193 MET A 195 1 O GLU A 193 N ALA A 136 SHEET 1 AA2 4 ALA A 69 CYS A 71 0 SHEET 2 AA2 4 TRP A 119 PHE A 121 1 O PHE A 121 N CYS A 71 SHEET 3 AA2 4 GLN A 141 GLY A 143 1 O GLN A 141 N CYS A 120 SHEET 4 AA2 4 LEU A 180 SER A 181 -1 O LEU A 180 N PHE A 142 SHEET 1 AA3 6 VAL B 15 VAL B 20 0 SHEET 2 AA3 6 VAL B 23 TYR B 28 -1 O VAL B 23 N VAL B 20 SHEET 3 AA3 6 VAL B 60 GLY B 65 1 O VAL B 62 N VAL B 26 SHEET 4 AA3 6 THR B 112 VAL B 116 1 O ILE B 113 N LEU B 63 SHEET 5 AA3 6 LEU B 133 ALA B 137 1 O PHE B 135 N VAL B 116 SHEET 6 AA3 6 GLU B 193 MET B 195 1 O GLU B 193 N ALA B 136 SHEET 1 AA4 4 ALA B 69 CYS B 71 0 SHEET 2 AA4 4 TRP B 119 PHE B 121 1 O TRP B 119 N CYS B 71 SHEET 3 AA4 4 GLN B 141 GLY B 143 1 O GLN B 141 N CYS B 120 SHEET 4 AA4 4 LEU B 180 SER B 181 -1 O LEU B 180 N PHE B 142 CRYST1 132.471 132.471 241.533 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007549 0.004358 0.000000 0.00000 SCALE2 0.000000 0.008717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004140 0.00000