HEADER STRUCTURAL PROTEIN 05-JUN-22 7Y0I TITLE SOLUTION STRUCTURES OF ASH1L PHD DOMAIN IN COMPLEX WITH H3K4ME2 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE ASH1L; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASH1-LIKE PROTEIN,HUASH1,ABSENT SMALL AND HOMEOTIC DISKS COMPND 5 PROTEIN 1 HOMOLOG,LYSINE N-METHYLTRANSFERASE 2H; COMPND 6 EC: 2.1.1.359,2.1.1.367; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ALA-ARG-THR-MLY-GLN-THR-ALA-ARG-LYS-SER-THR-GLY-GLY-LYS- COMPND 10 ALA; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: ASH1L, KIAA1420, KMT2H; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS ASH1L, PHD DOMAIN, H3K4ME2, PROSTATE CANCER, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YU,L.ZENG REVDAT 1 12-OCT-22 7Y0I 0 JRNL AUTH M.YU,Y.JIA,Z.MA,D.JI,C.WANG,Y.LIANG,Q.ZHANG,H.YI,L.ZENG JRNL TITL STRUCTURAL INSIGHT INTO ASH1L PHD FINGER RECOGNIZING JRNL TITL 2 METHYLATED HISTONE H3K4 AND PROMOTING CELL GROWTH IN JRNL TITL 3 PROSTATE CANCER. JRNL REF FRONT ONCOL V. 12 06807 2022 JRNL REFN ISSN 2234-943X JRNL PMID 36033518 JRNL DOI 10.3389/FONC.2022.906807 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Y0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300030031. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 100 UM ZINC ION, REMARK 210 2.0 MM [U-100% 2H] DTT, 90% H2O/ REMARK 210 10% D2O; 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 100 UM REMARK 210 ZINC ION, 2.0 MM [U-100% 2H] DTT, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HN(COCA)CB; 3D 1H REMARK 210 -15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 13C-EDITED 13C/15N- REMARK 210 FILTERED NOESY ALIPHATIC; 3D 13C- REMARK 210 EDITED 13C/15N-FILTERED NOESY REMARK 210 AROMATIC; 2D TOCSY; 2D ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TOPSPIN, NMRPIPE REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 22 HG3 MET A 27 1.29 REMARK 500 O ASN A 38 HG1 THR A 39 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 -46.02 -163.46 REMARK 500 1 TYR A 14 94.88 -68.10 REMARK 500 1 THR A 39 -31.93 66.33 REMARK 500 1 SER B 310 -35.54 -131.30 REMARK 500 1 THR B 311 78.09 -118.94 REMARK 500 2 ARG A 4 -29.64 -167.92 REMARK 500 2 ASP A 5 73.03 53.59 REMARK 500 2 TYR A 14 95.45 -63.55 REMARK 500 2 THR A 39 -32.83 66.55 REMARK 500 3 TYR A 14 97.20 -63.86 REMARK 500 3 THR A 39 -36.50 65.97 REMARK 500 4 TYR A 14 82.54 -67.46 REMARK 500 4 THR A 39 -35.73 67.05 REMARK 500 4 ALA B 307 -42.58 170.65 REMARK 500 5 ARG A 4 -12.83 72.31 REMARK 500 5 THR A 39 -37.11 66.59 REMARK 500 5 THR B 306 -96.48 -103.88 REMARK 500 5 ALA B 307 -70.38 65.28 REMARK 500 6 ARG A 4 -35.63 72.76 REMARK 500 6 TYR A 14 85.69 -63.60 REMARK 500 6 THR A 39 -38.13 66.78 REMARK 500 6 ALA B 307 -79.28 -168.54 REMARK 500 6 ARG B 308 -158.65 51.14 REMARK 500 7 ARG A 4 -39.15 -148.64 REMARK 500 7 TYR A 14 87.83 -65.78 REMARK 500 7 THR A 39 -34.36 66.01 REMARK 500 7 THR B 306 -79.93 -123.45 REMARK 500 7 ALA B 307 72.13 54.30 REMARK 500 8 ARG A 4 -43.59 -147.89 REMARK 500 8 ASP A 5 69.98 -107.13 REMARK 500 8 TYR A 14 95.33 -66.44 REMARK 500 8 MET A 27 62.54 62.11 REMARK 500 8 THR A 39 -36.55 67.41 REMARK 500 9 TYR A 14 89.91 -66.40 REMARK 500 9 MET A 27 -0.28 77.70 REMARK 500 9 THR A 39 -35.22 66.39 REMARK 500 9 THR B 306 -74.82 -100.30 REMARK 500 10 TYR A 14 85.44 -68.63 REMARK 500 10 THR A 39 -35.92 67.37 REMARK 500 10 ARG B 308 34.74 -89.00 REMARK 500 11 TYR A 14 91.52 -65.82 REMARK 500 11 THR A 39 -34.85 66.83 REMARK 500 12 TYR A 14 89.40 -66.82 REMARK 500 12 THR A 39 -28.18 65.53 REMARK 500 12 ARG B 308 70.80 62.71 REMARK 500 12 LYS B 309 83.52 61.61 REMARK 500 12 SER B 310 55.64 -141.57 REMARK 500 12 THR B 311 94.16 -62.93 REMARK 500 13 TYR A 14 87.63 -65.23 REMARK 500 13 THR A 39 -32.88 66.55 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 11 SG 111.8 REMARK 620 3 HIS A 31 ND1 108.2 110.3 REMARK 620 4 CYS A 34 SG 108.2 110.2 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 26 SG 105.5 REMARK 620 3 CYS A 46 SG 107.9 112.4 REMARK 620 4 CYS A 49 SG 107.3 113.9 109.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36492 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURES OF ASH1L PHD DOMAIN IN COMPLEX WITH H3K4ME2 REMARK 900 PEPTIDE DBREF 7Y0I A 5 56 UNP Q9NR48 ASH1L_HUMAN 2584 2635 DBREF 7Y0I B 301 315 PDB 7Y0I 7Y0I 301 315 SEQADV 7Y0I SER A 1 UNP Q9NR48 EXPRESSION TAG SEQADV 7Y0I GLY A 2 UNP Q9NR48 EXPRESSION TAG SEQADV 7Y0I GLY A 3 UNP Q9NR48 EXPRESSION TAG SEQADV 7Y0I ARG A 4 UNP Q9NR48 EXPRESSION TAG SEQADV 7Y0I THR A 39 UNP Q9NR48 SER 2618 CONFLICT SEQRES 1 A 56 SER GLY GLY ARG ASP VAL ILE ARG CYS ILE CYS GLY LEU SEQRES 2 A 56 TYR LYS ASP GLU GLY LEU MET ILE GLN CYS ASP LYS CYS SEQRES 3 A 56 MET VAL TRP GLN HIS CYS ASP CYS MET GLY VAL ASN THR SEQRES 4 A 56 ASP VAL GLU HIS TYR LEU CYS GLU GLN CYS ASP PRO ARG SEQRES 5 A 56 PRO VAL ASP ARG SEQRES 1 B 15 ALA ARG THR MLY GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 B 15 LYS ALA HET MLY B 304 27 HET ZN A 501 1 HET ZN A 502 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM ZN ZINC ION FORMUL 2 MLY C8 H18 N2 O2 FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 CYS A 32 GLY A 36 1 5 SHEET 1 AA1 3 TRP A 29 HIS A 31 0 SHEET 2 AA1 3 LEU A 19 GLN A 22 -1 N ILE A 21 O GLN A 30 SHEET 3 AA1 3 THR B 303 GLN B 305 -1 O MLY B 304 N MET A 20 LINK C THR B 303 N MLY B 304 1555 1555 1.32 LINK C MLY B 304 N GLN B 305 1555 1555 1.32 LINK SG CYS A 9 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 11 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 23 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 26 ZN ZN A 502 1555 1555 2.34 LINK ND1 HIS A 31 ZN ZN A 501 1555 1555 2.11 LINK SG CYS A 34 ZN ZN A 501 1555 1555 2.31 LINK SG CYS A 46 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 49 ZN ZN A 502 1555 1555 2.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1