data_7Y14 # _entry.id 7Y14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Y14 pdb_00007y14 10.2210/pdb7y14/pdb WWPDB D_1300030057 ? ? EMDB EMD-33556 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of MrgD-Gi complex with beta-alanine (local)' _pdbx_database_related.db_id EMD-33556 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Y14 _pdbx_database_status.recvd_initial_deposition_date 2022-06-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Suzuki, S.' 1 0000-0002-6516-8424 'Iida, M.' 2 0000-0003-4814-2262 'Kawamoto, A.' 3 0000-0002-7380-0127 'Oshima, A.' 4 0000-0003-1174-1368 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 707 _citation.page_last 707 _citation.title 'Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-022-03668-3 _citation.pdbx_database_id_PubMed 35840655 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Iida, M.' 2 ? primary 'Hiroaki, Y.' 3 0000-0003-0630-5887 primary 'Tanaka, K.' 4 ? primary 'Kawamoto, A.' 5 0000-0002-7380-0127 primary 'Kato, T.' 6 0000-0002-8879-6685 primary 'Oshima, A.' 7 0000-0003-1174-1368 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7Y14 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7Y14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Soluble cytochrome b562,Mas-related G-protein coupled receptor member D' 50141.285 1 ? 'M29W ,H124I' 'Chimera protein of Cytochrome b-562 (UNP residues 23-127) and MrgD (UNP residues 5-321)' ? 2 non-polymer syn BETA-ALANINE 89.093 1 ? ? ? ? 3 non-polymer syn 'PALMITIC ACID' 256.424 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cytochrome b-562,Beta-alanine receptor,G-protein coupled receptor TGR7' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKTIIALSYIFCLVFADYKDDDDKADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSP EMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLNSSGTVESALNYSRGSTVHTAYLVLSSLAM FTCLCGMAGNSMVIWLLGFRMHRNPFCIYILNLAAADLLFLFSMASTLSLETQPLVNTTDKVHELMKRLMYFAYTVGLSL LTAISTQRCLSVLFPIWFKCHRPRHLSAWVCGLLWTLCLLMNGLTSSFCSKFLKFNEDRCFRVDMVQAALIMGVLTPVMT LSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPPEMQVLCFSLSRLSSSVSSSANPVI YFLVGSRRSHRLPTRSLGTVLQQALREEPELEGGETPTVGTNEMGA ; _entity_poly.pdbx_seq_one_letter_code_can ;MKTIIALSYIFCLVFADYKDDDDKADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSP EMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLNSSGTVESALNYSRGSTVHTAYLVLSSLAM FTCLCGMAGNSMVIWLLGFRMHRNPFCIYILNLAAADLLFLFSMASTLSLETQPLVNTTDKVHELMKRLMYFAYTVGLSL LTAISTQRCLSVLFPIWFKCHRPRHLSAWVCGLLWTLCLLMNGLTSSFCSKFLKFNEDRCFRVDMVQAALIMGVLTPVMT LSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPPEMQVLCFSLSRLSSSVSSSANPVI YFLVGSRRSHRLPTRSLGTVLQQALREEPELEGGETPTVGTNEMGA ; _entity_poly.pdbx_strand_id R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 THR n 1 4 ILE n 1 5 ILE n 1 6 ALA n 1 7 LEU n 1 8 SER n 1 9 TYR n 1 10 ILE n 1 11 PHE n 1 12 CYS n 1 13 LEU n 1 14 VAL n 1 15 PHE n 1 16 ALA n 1 17 ASP n 1 18 TYR n 1 19 LYS n 1 20 ASP n 1 21 ASP n 1 22 ASP n 1 23 ASP n 1 24 LYS n 1 25 ALA n 1 26 ASP n 1 27 LEU n 1 28 GLU n 1 29 ASP n 1 30 ASN n 1 31 TRP n 1 32 GLU n 1 33 THR n 1 34 LEU n 1 35 ASN n 1 36 ASP n 1 37 ASN n 1 38 LEU n 1 39 LYS n 1 40 VAL n 1 41 ILE n 1 42 GLU n 1 43 LYS n 1 44 ALA n 1 45 ASP n 1 46 ASN n 1 47 ALA n 1 48 ALA n 1 49 GLN n 1 50 VAL n 1 51 LYS n 1 52 ASP n 1 53 ALA n 1 54 LEU n 1 55 THR n 1 56 LYS n 1 57 MET n 1 58 ARG n 1 59 ALA n 1 60 ALA n 1 61 ALA n 1 62 LEU n 1 63 ASP n 1 64 ALA n 1 65 GLN n 1 66 LYS n 1 67 ALA n 1 68 THR n 1 69 PRO n 1 70 PRO n 1 71 LYS n 1 72 LEU n 1 73 GLU n 1 74 ASP n 1 75 LYS n 1 76 SER n 1 77 PRO n 1 78 ASP n 1 79 SER n 1 80 PRO n 1 81 GLU n 1 82 MET n 1 83 LYS n 1 84 ASP n 1 85 PHE n 1 86 ARG n 1 87 HIS n 1 88 GLY n 1 89 PHE n 1 90 ASP n 1 91 ILE n 1 92 LEU n 1 93 VAL n 1 94 GLY n 1 95 GLN n 1 96 ILE n 1 97 ASP n 1 98 ASP n 1 99 ALA n 1 100 LEU n 1 101 LYS n 1 102 LEU n 1 103 ALA n 1 104 ASN n 1 105 GLU n 1 106 GLY n 1 107 LYS n 1 108 VAL n 1 109 LYS n 1 110 GLU n 1 111 ALA n 1 112 GLN n 1 113 ALA n 1 114 ALA n 1 115 ALA n 1 116 GLU n 1 117 GLN n 1 118 LEU n 1 119 LYS n 1 120 THR n 1 121 THR n 1 122 ARG n 1 123 ASN n 1 124 ALA n 1 125 TYR n 1 126 ILE n 1 127 GLN n 1 128 LYS n 1 129 TYR n 1 130 LEU n 1 131 ASN n 1 132 SER n 1 133 SER n 1 134 GLY n 1 135 THR n 1 136 VAL n 1 137 GLU n 1 138 SER n 1 139 ALA n 1 140 LEU n 1 141 ASN n 1 142 TYR n 1 143 SER n 1 144 ARG n 1 145 GLY n 1 146 SER n 1 147 THR n 1 148 VAL n 1 149 HIS n 1 150 THR n 1 151 ALA n 1 152 TYR n 1 153 LEU n 1 154 VAL n 1 155 LEU n 1 156 SER n 1 157 SER n 1 158 LEU n 1 159 ALA n 1 160 MET n 1 161 PHE n 1 162 THR n 1 163 CYS n 1 164 LEU n 1 165 CYS n 1 166 GLY n 1 167 MET n 1 168 ALA n 1 169 GLY n 1 170 ASN n 1 171 SER n 1 172 MET n 1 173 VAL n 1 174 ILE n 1 175 TRP n 1 176 LEU n 1 177 LEU n 1 178 GLY n 1 179 PHE n 1 180 ARG n 1 181 MET n 1 182 HIS n 1 183 ARG n 1 184 ASN n 1 185 PRO n 1 186 PHE n 1 187 CYS n 1 188 ILE n 1 189 TYR n 1 190 ILE n 1 191 LEU n 1 192 ASN n 1 193 LEU n 1 194 ALA n 1 195 ALA n 1 196 ALA n 1 197 ASP n 1 198 LEU n 1 199 LEU n 1 200 PHE n 1 201 LEU n 1 202 PHE n 1 203 SER n 1 204 MET n 1 205 ALA n 1 206 SER n 1 207 THR n 1 208 LEU n 1 209 SER n 1 210 LEU n 1 211 GLU n 1 212 THR n 1 213 GLN n 1 214 PRO n 1 215 LEU n 1 216 VAL n 1 217 ASN n 1 218 THR n 1 219 THR n 1 220 ASP n 1 221 LYS n 1 222 VAL n 1 223 HIS n 1 224 GLU n 1 225 LEU n 1 226 MET n 1 227 LYS n 1 228 ARG n 1 229 LEU n 1 230 MET n 1 231 TYR n 1 232 PHE n 1 233 ALA n 1 234 TYR n 1 235 THR n 1 236 VAL n 1 237 GLY n 1 238 LEU n 1 239 SER n 1 240 LEU n 1 241 LEU n 1 242 THR n 1 243 ALA n 1 244 ILE n 1 245 SER n 1 246 THR n 1 247 GLN n 1 248 ARG n 1 249 CYS n 1 250 LEU n 1 251 SER n 1 252 VAL n 1 253 LEU n 1 254 PHE n 1 255 PRO n 1 256 ILE n 1 257 TRP n 1 258 PHE n 1 259 LYS n 1 260 CYS n 1 261 HIS n 1 262 ARG n 1 263 PRO n 1 264 ARG n 1 265 HIS n 1 266 LEU n 1 267 SER n 1 268 ALA n 1 269 TRP n 1 270 VAL n 1 271 CYS n 1 272 GLY n 1 273 LEU n 1 274 LEU n 1 275 TRP n 1 276 THR n 1 277 LEU n 1 278 CYS n 1 279 LEU n 1 280 LEU n 1 281 MET n 1 282 ASN n 1 283 GLY n 1 284 LEU n 1 285 THR n 1 286 SER n 1 287 SER n 1 288 PHE n 1 289 CYS n 1 290 SER n 1 291 LYS n 1 292 PHE n 1 293 LEU n 1 294 LYS n 1 295 PHE n 1 296 ASN n 1 297 GLU n 1 298 ASP n 1 299 ARG n 1 300 CYS n 1 301 PHE n 1 302 ARG n 1 303 VAL n 1 304 ASP n 1 305 MET n 1 306 VAL n 1 307 GLN n 1 308 ALA n 1 309 ALA n 1 310 LEU n 1 311 ILE n 1 312 MET n 1 313 GLY n 1 314 VAL n 1 315 LEU n 1 316 THR n 1 317 PRO n 1 318 VAL n 1 319 MET n 1 320 THR n 1 321 LEU n 1 322 SER n 1 323 SER n 1 324 LEU n 1 325 THR n 1 326 LEU n 1 327 PHE n 1 328 VAL n 1 329 TRP n 1 330 VAL n 1 331 ARG n 1 332 ARG n 1 333 SER n 1 334 SER n 1 335 GLN n 1 336 GLN n 1 337 TRP n 1 338 ARG n 1 339 ARG n 1 340 GLN n 1 341 PRO n 1 342 THR n 1 343 ARG n 1 344 LEU n 1 345 PHE n 1 346 VAL n 1 347 VAL n 1 348 VAL n 1 349 LEU n 1 350 ALA n 1 351 SER n 1 352 VAL n 1 353 LEU n 1 354 VAL n 1 355 PHE n 1 356 LEU n 1 357 ILE n 1 358 CYS n 1 359 SER n 1 360 LEU n 1 361 PRO n 1 362 LEU n 1 363 SER n 1 364 ILE n 1 365 TYR n 1 366 TRP n 1 367 PHE n 1 368 VAL n 1 369 LEU n 1 370 TYR n 1 371 TRP n 1 372 LEU n 1 373 SER n 1 374 LEU n 1 375 PRO n 1 376 PRO n 1 377 GLU n 1 378 MET n 1 379 GLN n 1 380 VAL n 1 381 LEU n 1 382 CYS n 1 383 PHE n 1 384 SER n 1 385 LEU n 1 386 SER n 1 387 ARG n 1 388 LEU n 1 389 SER n 1 390 SER n 1 391 SER n 1 392 VAL n 1 393 SER n 1 394 SER n 1 395 SER n 1 396 ALA n 1 397 ASN n 1 398 PRO n 1 399 VAL n 1 400 ILE n 1 401 TYR n 1 402 PHE n 1 403 LEU n 1 404 VAL n 1 405 GLY n 1 406 SER n 1 407 ARG n 1 408 ARG n 1 409 SER n 1 410 HIS n 1 411 ARG n 1 412 LEU n 1 413 PRO n 1 414 THR n 1 415 ARG n 1 416 SER n 1 417 LEU n 1 418 GLY n 1 419 THR n 1 420 VAL n 1 421 LEU n 1 422 GLN n 1 423 GLN n 1 424 ALA n 1 425 LEU n 1 426 ARG n 1 427 GLU n 1 428 GLU n 1 429 PRO n 1 430 GLU n 1 431 LEU n 1 432 GLU n 1 433 GLY n 1 434 GLY n 1 435 GLU n 1 436 THR n 1 437 PRO n 1 438 THR n 1 439 VAL n 1 440 GLY n 1 441 THR n 1 442 ASN n 1 443 GLU n 1 444 MET n 1 445 GLY n 1 446 ALA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 129 ? ? cybC ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 130 446 human ? 'MRGPRD, MRGD' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP C562_ECOLX P0ABE7 ? 1 ;ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN EGKVKEAQAAAEQLKTTRNAYHQKY ; 23 2 UNP MRGRD_HUMAN Q8TDS7 ? 1 ;LNSSGTVESALNYSRGSTVHTAYLVLSSLAMFTCLCGMAGNSMVIWLLGFRMHRNPFCIYILNLAAADLLFLFSMASTLS LETQPLVNTTDKVHELMKRLMYFAYTVGLSLLTAISTQRCLSVLFPIWFKCHRPRHLSAWVCGLLWTLCLLMNGLTSSFC SKFLKFNEDRCFRVDMVQAALIMGVLTPVMTLSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVL YWLSLPPEMQVLCFSLSRLSSSVSSSANPVIYFLVGSRRSHRLPTRSLGTVLQQALREEPELEGGETPTVGTNEMGA ; 5 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Y14 R 25 ? 129 ? P0ABE7 23 ? 127 ? -100 4 2 2 7Y14 R 130 ? 446 ? Q8TDS7 5 ? 321 ? 5 321 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7Y14 MET R 1 ? UNP P0ABE7 ? ? 'initiating methionine' -124 1 1 7Y14 LYS R 2 ? UNP P0ABE7 ? ? 'expression tag' -123 2 1 7Y14 THR R 3 ? UNP P0ABE7 ? ? 'expression tag' -122 3 1 7Y14 ILE R 4 ? UNP P0ABE7 ? ? 'expression tag' -121 4 1 7Y14 ILE R 5 ? UNP P0ABE7 ? ? 'expression tag' -120 5 1 7Y14 ALA R 6 ? UNP P0ABE7 ? ? 'expression tag' -119 6 1 7Y14 LEU R 7 ? UNP P0ABE7 ? ? 'expression tag' -118 7 1 7Y14 SER R 8 ? UNP P0ABE7 ? ? 'expression tag' -117 8 1 7Y14 TYR R 9 ? UNP P0ABE7 ? ? 'expression tag' -116 9 1 7Y14 ILE R 10 ? UNP P0ABE7 ? ? 'expression tag' -115 10 1 7Y14 PHE R 11 ? UNP P0ABE7 ? ? 'expression tag' -114 11 1 7Y14 CYS R 12 ? UNP P0ABE7 ? ? 'expression tag' -113 12 1 7Y14 LEU R 13 ? UNP P0ABE7 ? ? 'expression tag' -112 13 1 7Y14 VAL R 14 ? UNP P0ABE7 ? ? 'expression tag' -111 14 1 7Y14 PHE R 15 ? UNP P0ABE7 ? ? 'expression tag' -110 15 1 7Y14 ALA R 16 ? UNP P0ABE7 ? ? 'expression tag' -109 16 1 7Y14 ASP R 17 ? UNP P0ABE7 ? ? 'expression tag' -108 17 1 7Y14 TYR R 18 ? UNP P0ABE7 ? ? 'expression tag' -107 18 1 7Y14 LYS R 19 ? UNP P0ABE7 ? ? 'expression tag' -106 19 1 7Y14 ASP R 20 ? UNP P0ABE7 ? ? 'expression tag' -105 20 1 7Y14 ASP R 21 ? UNP P0ABE7 ? ? 'expression tag' -104 21 1 7Y14 ASP R 22 ? UNP P0ABE7 ? ? 'expression tag' -103 22 1 7Y14 ASP R 23 ? UNP P0ABE7 ? ? 'expression tag' -102 23 1 7Y14 LYS R 24 ? UNP P0ABE7 ? ? 'expression tag' -101 24 1 7Y14 TRP R 31 ? UNP P0ABE7 MET 29 'engineered mutation' -94 25 1 7Y14 ILE R 126 ? UNP P0ABE7 HIS 124 'engineered mutation' 1 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BAL peptide-like . BETA-ALANINE ? 'C3 H7 N O2' 89.093 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PLM non-polymer . 'PALMITIC ACID' ? 'C16 H32 O2' 256.424 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Y14 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7Y14 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 2195 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.598 ? 2968 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 7.459 ? 342 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.039 ? 351 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 348 ? f_plane_restr ? ? # _struct.entry_id 7Y14 _struct.title 'Cryo-EM structure of MrgD-Gi complex with beta-alanine (local)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Y14 _struct_keywords.text 'GPCR, Complex, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 147 ? LEU A 177 ? THR R 22 LEU R 52 1 ? 31 HELX_P HELX_P2 AA2 CYS A 187 ? GLU A 211 ? CYS R 62 GLU R 86 1 ? 25 HELX_P HELX_P3 AA3 ASP A 220 ? PHE A 254 ? ASP R 95 PHE R 129 1 ? 35 HELX_P HELX_P4 AA4 PHE A 254 ? HIS A 261 ? PHE R 129 HIS R 136 1 ? 8 HELX_P HELX_P5 AA5 HIS A 265 ? SER A 290 ? HIS R 140 SER R 165 1 ? 26 HELX_P HELX_P6 AA6 GLU A 297 ? VAL A 314 ? GLU R 172 VAL R 189 1 ? 18 HELX_P HELX_P7 AA7 VAL A 314 ? SER A 334 ? VAL R 189 SER R 209 1 ? 21 HELX_P HELX_P8 AA8 PRO A 341 ? SER A 359 ? PRO R 216 SER R 234 1 ? 19 HELX_P HELX_P9 AA9 SER A 359 ? PHE A 367 ? SER R 234 PHE R 242 1 ? 9 HELX_P HELX_P10 AB1 MET A 378 ? PHE A 402 ? MET R 253 PHE R 277 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 289 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 300 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 164 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 175 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7Y14 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -124 ? ? ? R . n A 1 2 LYS 2 -123 ? ? ? R . n A 1 3 THR 3 -122 ? ? ? R . n A 1 4 ILE 4 -121 ? ? ? R . n A 1 5 ILE 5 -120 ? ? ? R . n A 1 6 ALA 6 -119 ? ? ? R . n A 1 7 LEU 7 -118 ? ? ? R . n A 1 8 SER 8 -117 ? ? ? R . n A 1 9 TYR 9 -116 ? ? ? R . n A 1 10 ILE 10 -115 ? ? ? R . n A 1 11 PHE 11 -114 ? ? ? R . n A 1 12 CYS 12 -113 ? ? ? R . n A 1 13 LEU 13 -112 ? ? ? R . n A 1 14 VAL 14 -111 ? ? ? R . n A 1 15 PHE 15 -110 ? ? ? R . n A 1 16 ALA 16 -109 ? ? ? R . n A 1 17 ASP 17 -108 ? ? ? R . n A 1 18 TYR 18 -107 ? ? ? R . n A 1 19 LYS 19 -106 ? ? ? R . n A 1 20 ASP 20 -105 ? ? ? R . n A 1 21 ASP 21 -104 ? ? ? R . n A 1 22 ASP 22 -103 ? ? ? R . n A 1 23 ASP 23 -102 ? ? ? R . n A 1 24 LYS 24 -101 ? ? ? R . n A 1 25 ALA 25 -100 ? ? ? R . n A 1 26 ASP 26 -99 ? ? ? R . n A 1 27 LEU 27 -98 ? ? ? R . n A 1 28 GLU 28 -97 ? ? ? R . n A 1 29 ASP 29 -96 ? ? ? R . n A 1 30 ASN 30 -95 ? ? ? R . n A 1 31 TRP 31 -94 ? ? ? R . n A 1 32 GLU 32 -93 ? ? ? R . n A 1 33 THR 33 -92 ? ? ? R . n A 1 34 LEU 34 -91 ? ? ? R . n A 1 35 ASN 35 -90 ? ? ? R . n A 1 36 ASP 36 -89 ? ? ? R . n A 1 37 ASN 37 -88 ? ? ? R . n A 1 38 LEU 38 -87 ? ? ? R . n A 1 39 LYS 39 -86 ? ? ? R . n A 1 40 VAL 40 -85 ? ? ? R . n A 1 41 ILE 41 -84 ? ? ? R . n A 1 42 GLU 42 -83 ? ? ? R . n A 1 43 LYS 43 -82 ? ? ? R . n A 1 44 ALA 44 -81 ? ? ? R . n A 1 45 ASP 45 -80 ? ? ? R . n A 1 46 ASN 46 -79 ? ? ? R . n A 1 47 ALA 47 -78 ? ? ? R . n A 1 48 ALA 48 -77 ? ? ? R . n A 1 49 GLN 49 -76 ? ? ? R . n A 1 50 VAL 50 -75 ? ? ? R . n A 1 51 LYS 51 -74 ? ? ? R . n A 1 52 ASP 52 -73 ? ? ? R . n A 1 53 ALA 53 -72 ? ? ? R . n A 1 54 LEU 54 -71 ? ? ? R . n A 1 55 THR 55 -70 ? ? ? R . n A 1 56 LYS 56 -69 ? ? ? R . n A 1 57 MET 57 -68 ? ? ? R . n A 1 58 ARG 58 -67 ? ? ? R . n A 1 59 ALA 59 -66 ? ? ? R . n A 1 60 ALA 60 -65 ? ? ? R . n A 1 61 ALA 61 -64 ? ? ? R . n A 1 62 LEU 62 -63 ? ? ? R . n A 1 63 ASP 63 -62 ? ? ? R . n A 1 64 ALA 64 -61 ? ? ? R . n A 1 65 GLN 65 -60 ? ? ? R . n A 1 66 LYS 66 -59 ? ? ? R . n A 1 67 ALA 67 -58 ? ? ? R . n A 1 68 THR 68 -57 ? ? ? R . n A 1 69 PRO 69 -56 ? ? ? R . n A 1 70 PRO 70 -55 ? ? ? R . n A 1 71 LYS 71 -54 ? ? ? R . n A 1 72 LEU 72 -53 ? ? ? R . n A 1 73 GLU 73 -52 ? ? ? R . n A 1 74 ASP 74 -51 ? ? ? R . n A 1 75 LYS 75 -50 ? ? ? R . n A 1 76 SER 76 -49 ? ? ? R . n A 1 77 PRO 77 -48 ? ? ? R . n A 1 78 ASP 78 -47 ? ? ? R . n A 1 79 SER 79 -46 ? ? ? R . n A 1 80 PRO 80 -45 ? ? ? R . n A 1 81 GLU 81 -44 ? ? ? R . n A 1 82 MET 82 -43 ? ? ? R . n A 1 83 LYS 83 -42 ? ? ? R . n A 1 84 ASP 84 -41 ? ? ? R . n A 1 85 PHE 85 -40 ? ? ? R . n A 1 86 ARG 86 -39 ? ? ? R . n A 1 87 HIS 87 -38 ? ? ? R . n A 1 88 GLY 88 -37 ? ? ? R . n A 1 89 PHE 89 -36 ? ? ? R . n A 1 90 ASP 90 -35 ? ? ? R . n A 1 91 ILE 91 -34 ? ? ? R . n A 1 92 LEU 92 -33 ? ? ? R . n A 1 93 VAL 93 -32 ? ? ? R . n A 1 94 GLY 94 -31 ? ? ? R . n A 1 95 GLN 95 -30 ? ? ? R . n A 1 96 ILE 96 -29 ? ? ? R . n A 1 97 ASP 97 -28 ? ? ? R . n A 1 98 ASP 98 -27 ? ? ? R . n A 1 99 ALA 99 -26 ? ? ? R . n A 1 100 LEU 100 -25 ? ? ? R . n A 1 101 LYS 101 -24 ? ? ? R . n A 1 102 LEU 102 -23 ? ? ? R . n A 1 103 ALA 103 -22 ? ? ? R . n A 1 104 ASN 104 -21 ? ? ? R . n A 1 105 GLU 105 -20 ? ? ? R . n A 1 106 GLY 106 -19 ? ? ? R . n A 1 107 LYS 107 -18 ? ? ? R . n A 1 108 VAL 108 -17 ? ? ? R . n A 1 109 LYS 109 -16 ? ? ? R . n A 1 110 GLU 110 -15 ? ? ? R . n A 1 111 ALA 111 -14 ? ? ? R . n A 1 112 GLN 112 -13 ? ? ? R . n A 1 113 ALA 113 -12 ? ? ? R . n A 1 114 ALA 114 -11 ? ? ? R . n A 1 115 ALA 115 -10 ? ? ? R . n A 1 116 GLU 116 -9 ? ? ? R . n A 1 117 GLN 117 -8 ? ? ? R . n A 1 118 LEU 118 -7 ? ? ? R . n A 1 119 LYS 119 -6 ? ? ? R . n A 1 120 THR 120 -5 ? ? ? R . n A 1 121 THR 121 -4 ? ? ? R . n A 1 122 ARG 122 -3 ? ? ? R . n A 1 123 ASN 123 -2 ? ? ? R . n A 1 124 ALA 124 -1 ? ? ? R . n A 1 125 TYR 125 0 ? ? ? R . n A 1 126 ILE 126 1 ? ? ? R . n A 1 127 GLN 127 2 ? ? ? R . n A 1 128 LYS 128 3 ? ? ? R . n A 1 129 TYR 129 4 ? ? ? R . n A 1 130 LEU 130 5 ? ? ? R . n A 1 131 ASN 131 6 ? ? ? R . n A 1 132 SER 132 7 ? ? ? R . n A 1 133 SER 133 8 ? ? ? R . n A 1 134 GLY 134 9 ? ? ? R . n A 1 135 THR 135 10 ? ? ? R . n A 1 136 VAL 136 11 ? ? ? R . n A 1 137 GLU 137 12 ? ? ? R . n A 1 138 SER 138 13 ? ? ? R . n A 1 139 ALA 139 14 ? ? ? R . n A 1 140 LEU 140 15 ? ? ? R . n A 1 141 ASN 141 16 ? ? ? R . n A 1 142 TYR 142 17 ? ? ? R . n A 1 143 SER 143 18 ? ? ? R . n A 1 144 ARG 144 19 ? ? ? R . n A 1 145 GLY 145 20 ? ? ? R . n A 1 146 SER 146 21 ? ? ? R . n A 1 147 THR 147 22 22 THR THR R . n A 1 148 VAL 148 23 23 VAL VAL R . n A 1 149 HIS 149 24 24 HIS HIS R . n A 1 150 THR 150 25 25 THR THR R . n A 1 151 ALA 151 26 26 ALA ALA R . n A 1 152 TYR 152 27 27 TYR TYR R . n A 1 153 LEU 153 28 28 LEU LEU R . n A 1 154 VAL 154 29 29 VAL VAL R . n A 1 155 LEU 155 30 30 LEU LEU R . n A 1 156 SER 156 31 31 SER SER R . n A 1 157 SER 157 32 32 SER SER R . n A 1 158 LEU 158 33 33 LEU LEU R . n A 1 159 ALA 159 34 34 ALA ALA R . n A 1 160 MET 160 35 35 MET MET R . n A 1 161 PHE 161 36 36 PHE PHE R . n A 1 162 THR 162 37 37 THR THR R . n A 1 163 CYS 163 38 38 CYS CYS R . n A 1 164 LEU 164 39 39 LEU LEU R . n A 1 165 CYS 165 40 40 CYS CYS R . n A 1 166 GLY 166 41 41 GLY GLY R . n A 1 167 MET 167 42 42 MET MET R . n A 1 168 ALA 168 43 43 ALA ALA R . n A 1 169 GLY 169 44 44 GLY GLY R . n A 1 170 ASN 170 45 45 ASN ASN R . n A 1 171 SER 171 46 46 SER SER R . n A 1 172 MET 172 47 47 MET MET R . n A 1 173 VAL 173 48 48 VAL VAL R . n A 1 174 ILE 174 49 49 ILE ILE R . n A 1 175 TRP 175 50 50 TRP TRP R . n A 1 176 LEU 176 51 51 LEU LEU R . n A 1 177 LEU 177 52 52 LEU LEU R . n A 1 178 GLY 178 53 53 GLY GLY R . n A 1 179 PHE 179 54 54 PHE PHE R . n A 1 180 ARG 180 55 55 ARG ARG R . n A 1 181 MET 181 56 56 MET MET R . n A 1 182 HIS 182 57 57 HIS HIS R . n A 1 183 ARG 183 58 58 ARG ARG R . n A 1 184 ASN 184 59 59 ASN ASN R . n A 1 185 PRO 185 60 60 PRO PRO R . n A 1 186 PHE 186 61 61 PHE PHE R . n A 1 187 CYS 187 62 62 CYS CYS R . n A 1 188 ILE 188 63 63 ILE ILE R . n A 1 189 TYR 189 64 64 TYR TYR R . n A 1 190 ILE 190 65 65 ILE ILE R . n A 1 191 LEU 191 66 66 LEU LEU R . n A 1 192 ASN 192 67 67 ASN ASN R . n A 1 193 LEU 193 68 68 LEU LEU R . n A 1 194 ALA 194 69 69 ALA ALA R . n A 1 195 ALA 195 70 70 ALA ALA R . n A 1 196 ALA 196 71 71 ALA ALA R . n A 1 197 ASP 197 72 72 ASP ASP R . n A 1 198 LEU 198 73 73 LEU LEU R . n A 1 199 LEU 199 74 74 LEU LEU R . n A 1 200 PHE 200 75 75 PHE PHE R . n A 1 201 LEU 201 76 76 LEU LEU R . n A 1 202 PHE 202 77 77 PHE PHE R . n A 1 203 SER 203 78 78 SER SER R . n A 1 204 MET 204 79 79 MET MET R . n A 1 205 ALA 205 80 80 ALA ALA R . n A 1 206 SER 206 81 81 SER SER R . n A 1 207 THR 207 82 82 THR THR R . n A 1 208 LEU 208 83 83 LEU LEU R . n A 1 209 SER 209 84 84 SER SER R . n A 1 210 LEU 210 85 85 LEU LEU R . n A 1 211 GLU 211 86 86 GLU GLU R . n A 1 212 THR 212 87 87 THR THR R . n A 1 213 GLN 213 88 88 GLN GLN R . n A 1 214 PRO 214 89 89 PRO PRO R . n A 1 215 LEU 215 90 90 LEU LEU R . n A 1 216 VAL 216 91 91 VAL VAL R . n A 1 217 ASN 217 92 92 ASN ASN R . n A 1 218 THR 218 93 93 THR THR R . n A 1 219 THR 219 94 94 THR THR R . n A 1 220 ASP 220 95 95 ASP ASP R . n A 1 221 LYS 221 96 96 LYS LYS R . n A 1 222 VAL 222 97 97 VAL VAL R . n A 1 223 HIS 223 98 98 HIS HIS R . n A 1 224 GLU 224 99 99 GLU GLU R . n A 1 225 LEU 225 100 100 LEU LEU R . n A 1 226 MET 226 101 101 MET MET R . n A 1 227 LYS 227 102 102 LYS LYS R . n A 1 228 ARG 228 103 103 ARG ARG R . n A 1 229 LEU 229 104 104 LEU LEU R . n A 1 230 MET 230 105 105 MET MET R . n A 1 231 TYR 231 106 106 TYR TYR R . n A 1 232 PHE 232 107 107 PHE PHE R . n A 1 233 ALA 233 108 108 ALA ALA R . n A 1 234 TYR 234 109 109 TYR TYR R . n A 1 235 THR 235 110 110 THR THR R . n A 1 236 VAL 236 111 111 VAL VAL R . n A 1 237 GLY 237 112 112 GLY GLY R . n A 1 238 LEU 238 113 113 LEU LEU R . n A 1 239 SER 239 114 114 SER SER R . n A 1 240 LEU 240 115 115 LEU LEU R . n A 1 241 LEU 241 116 116 LEU LEU R . n A 1 242 THR 242 117 117 THR THR R . n A 1 243 ALA 243 118 118 ALA ALA R . n A 1 244 ILE 244 119 119 ILE ILE R . n A 1 245 SER 245 120 120 SER SER R . n A 1 246 THR 246 121 121 THR THR R . n A 1 247 GLN 247 122 122 GLN GLN R . n A 1 248 ARG 248 123 123 ARG ARG R . n A 1 249 CYS 249 124 124 CYS CYS R . n A 1 250 LEU 250 125 125 LEU LEU R . n A 1 251 SER 251 126 126 SER SER R . n A 1 252 VAL 252 127 127 VAL VAL R . n A 1 253 LEU 253 128 128 LEU LEU R . n A 1 254 PHE 254 129 129 PHE PHE R . n A 1 255 PRO 255 130 130 PRO PRO R . n A 1 256 ILE 256 131 131 ILE ILE R . n A 1 257 TRP 257 132 132 TRP TRP R . n A 1 258 PHE 258 133 133 PHE PHE R . n A 1 259 LYS 259 134 134 LYS LYS R . n A 1 260 CYS 260 135 135 CYS CYS R . n A 1 261 HIS 261 136 136 HIS HIS R . n A 1 262 ARG 262 137 137 ARG ARG R . n A 1 263 PRO 263 138 138 PRO PRO R . n A 1 264 ARG 264 139 139 ARG ARG R . n A 1 265 HIS 265 140 140 HIS HIS R . n A 1 266 LEU 266 141 141 LEU LEU R . n A 1 267 SER 267 142 142 SER SER R . n A 1 268 ALA 268 143 143 ALA ALA R . n A 1 269 TRP 269 144 144 TRP TRP R . n A 1 270 VAL 270 145 145 VAL VAL R . n A 1 271 CYS 271 146 146 CYS CYS R . n A 1 272 GLY 272 147 147 GLY GLY R . n A 1 273 LEU 273 148 148 LEU LEU R . n A 1 274 LEU 274 149 149 LEU LEU R . n A 1 275 TRP 275 150 150 TRP TRP R . n A 1 276 THR 276 151 151 THR THR R . n A 1 277 LEU 277 152 152 LEU LEU R . n A 1 278 CYS 278 153 153 CYS CYS R . n A 1 279 LEU 279 154 154 LEU LEU R . n A 1 280 LEU 280 155 155 LEU LEU R . n A 1 281 MET 281 156 156 MET MET R . n A 1 282 ASN 282 157 157 ASN ASN R . n A 1 283 GLY 283 158 158 GLY GLY R . n A 1 284 LEU 284 159 159 LEU LEU R . n A 1 285 THR 285 160 160 THR THR R . n A 1 286 SER 286 161 161 SER SER R . n A 1 287 SER 287 162 162 SER SER R . n A 1 288 PHE 288 163 163 PHE PHE R . n A 1 289 CYS 289 164 164 CYS CYS R . n A 1 290 SER 290 165 165 SER SER R . n A 1 291 LYS 291 166 166 LYS LYS R . n A 1 292 PHE 292 167 167 PHE PHE R . n A 1 293 LEU 293 168 168 LEU LEU R . n A 1 294 LYS 294 169 169 LYS LYS R . n A 1 295 PHE 295 170 170 PHE PHE R . n A 1 296 ASN 296 171 171 ASN ASN R . n A 1 297 GLU 297 172 172 GLU GLU R . n A 1 298 ASP 298 173 173 ASP ASP R . n A 1 299 ARG 299 174 174 ARG ARG R . n A 1 300 CYS 300 175 175 CYS CYS R . n A 1 301 PHE 301 176 176 PHE PHE R . n A 1 302 ARG 302 177 177 ARG ARG R . n A 1 303 VAL 303 178 178 VAL VAL R . n A 1 304 ASP 304 179 179 ASP ASP R . n A 1 305 MET 305 180 180 MET MET R . n A 1 306 VAL 306 181 181 VAL VAL R . n A 1 307 GLN 307 182 182 GLN GLN R . n A 1 308 ALA 308 183 183 ALA ALA R . n A 1 309 ALA 309 184 184 ALA ALA R . n A 1 310 LEU 310 185 185 LEU LEU R . n A 1 311 ILE 311 186 186 ILE ILE R . n A 1 312 MET 312 187 187 MET ALA R . n A 1 313 GLY 313 188 188 GLY GLY R . n A 1 314 VAL 314 189 189 VAL VAL R . n A 1 315 LEU 315 190 190 LEU LEU R . n A 1 316 THR 316 191 191 THR THR R . n A 1 317 PRO 317 192 192 PRO PRO R . n A 1 318 VAL 318 193 193 VAL VAL R . n A 1 319 MET 319 194 194 MET MET R . n A 1 320 THR 320 195 195 THR THR R . n A 1 321 LEU 321 196 196 LEU LEU R . n A 1 322 SER 322 197 197 SER SER R . n A 1 323 SER 323 198 198 SER SER R . n A 1 324 LEU 324 199 199 LEU LEU R . n A 1 325 THR 325 200 200 THR THR R . n A 1 326 LEU 326 201 201 LEU LEU R . n A 1 327 PHE 327 202 202 PHE PHE R . n A 1 328 VAL 328 203 203 VAL VAL R . n A 1 329 TRP 329 204 204 TRP TRP R . n A 1 330 VAL 330 205 205 VAL VAL R . n A 1 331 ARG 331 206 206 ARG ARG R . n A 1 332 ARG 332 207 207 ARG ARG R . n A 1 333 SER 333 208 208 SER SER R . n A 1 334 SER 334 209 209 SER SER R . n A 1 335 GLN 335 210 210 GLN GLN R . n A 1 336 GLN 336 211 211 GLN GLN R . n A 1 337 TRP 337 212 212 TRP TRP R . n A 1 338 ARG 338 213 213 ARG ARG R . n A 1 339 ARG 339 214 214 ARG ARG R . n A 1 340 GLN 340 215 215 GLN GLN R . n A 1 341 PRO 341 216 216 PRO PRO R . n A 1 342 THR 342 217 217 THR THR R . n A 1 343 ARG 343 218 218 ARG ARG R . n A 1 344 LEU 344 219 219 LEU LEU R . n A 1 345 PHE 345 220 220 PHE PHE R . n A 1 346 VAL 346 221 221 VAL VAL R . n A 1 347 VAL 347 222 222 VAL VAL R . n A 1 348 VAL 348 223 223 VAL VAL R . n A 1 349 LEU 349 224 224 LEU LEU R . n A 1 350 ALA 350 225 225 ALA ALA R . n A 1 351 SER 351 226 226 SER SER R . n A 1 352 VAL 352 227 227 VAL VAL R . n A 1 353 LEU 353 228 228 LEU LEU R . n A 1 354 VAL 354 229 229 VAL VAL R . n A 1 355 PHE 355 230 230 PHE PHE R . n A 1 356 LEU 356 231 231 LEU LEU R . n A 1 357 ILE 357 232 232 ILE ILE R . n A 1 358 CYS 358 233 233 CYS CYS R . n A 1 359 SER 359 234 234 SER SER R . n A 1 360 LEU 360 235 235 LEU LEU R . n A 1 361 PRO 361 236 236 PRO PRO R . n A 1 362 LEU 362 237 237 LEU LEU R . n A 1 363 SER 363 238 238 SER SER R . n A 1 364 ILE 364 239 239 ILE ILE R . n A 1 365 TYR 365 240 240 TYR TYR R . n A 1 366 TRP 366 241 241 TRP TRP R . n A 1 367 PHE 367 242 242 PHE PHE R . n A 1 368 VAL 368 243 243 VAL VAL R . n A 1 369 LEU 369 244 244 LEU LEU R . n A 1 370 TYR 370 245 245 TYR TYR R . n A 1 371 TRP 371 246 246 TRP TRP R . n A 1 372 LEU 372 247 247 LEU LEU R . n A 1 373 SER 373 248 248 SER SER R . n A 1 374 LEU 374 249 249 LEU LEU R . n A 1 375 PRO 375 250 250 PRO PRO R . n A 1 376 PRO 376 251 251 PRO PRO R . n A 1 377 GLU 377 252 252 GLU ALA R . n A 1 378 MET 378 253 253 MET MET R . n A 1 379 GLN 379 254 254 GLN GLN R . n A 1 380 VAL 380 255 255 VAL VAL R . n A 1 381 LEU 381 256 256 LEU LEU R . n A 1 382 CYS 382 257 257 CYS CYS R . n A 1 383 PHE 383 258 258 PHE PHE R . n A 1 384 SER 384 259 259 SER SER R . n A 1 385 LEU 385 260 260 LEU LEU R . n A 1 386 SER 386 261 261 SER SER R . n A 1 387 ARG 387 262 262 ARG ARG R . n A 1 388 LEU 388 263 263 LEU LEU R . n A 1 389 SER 389 264 264 SER SER R . n A 1 390 SER 390 265 265 SER SER R . n A 1 391 SER 391 266 266 SER SER R . n A 1 392 VAL 392 267 267 VAL VAL R . n A 1 393 SER 393 268 268 SER SER R . n A 1 394 SER 394 269 269 SER SER R . n A 1 395 SER 395 270 270 SER SER R . n A 1 396 ALA 396 271 271 ALA ALA R . n A 1 397 ASN 397 272 272 ASN ASN R . n A 1 398 PRO 398 273 273 PRO PRO R . n A 1 399 VAL 399 274 274 VAL VAL R . n A 1 400 ILE 400 275 275 ILE ILE R . n A 1 401 TYR 401 276 276 TYR TYR R . n A 1 402 PHE 402 277 277 PHE PHE R . n A 1 403 LEU 403 278 278 LEU LEU R . n A 1 404 VAL 404 279 279 VAL VAL R . n A 1 405 GLY 405 280 280 GLY GLY R . n A 1 406 SER 406 281 281 SER SER R . n A 1 407 ARG 407 282 282 ARG ARG R . n A 1 408 ARG 408 283 283 ARG ARG R . n A 1 409 SER 409 284 284 SER SER R . n A 1 410 HIS 410 285 285 HIS HIS R . n A 1 411 ARG 411 286 ? ? ? R . n A 1 412 LEU 412 287 ? ? ? R . n A 1 413 PRO 413 288 ? ? ? R . n A 1 414 THR 414 289 ? ? ? R . n A 1 415 ARG 415 290 ? ? ? R . n A 1 416 SER 416 291 ? ? ? R . n A 1 417 LEU 417 292 ? ? ? R . n A 1 418 GLY 418 293 ? ? ? R . n A 1 419 THR 419 294 ? ? ? R . n A 1 420 VAL 420 295 ? ? ? R . n A 1 421 LEU 421 296 ? ? ? R . n A 1 422 GLN 422 297 ? ? ? R . n A 1 423 GLN 423 298 ? ? ? R . n A 1 424 ALA 424 299 ? ? ? R . n A 1 425 LEU 425 300 ? ? ? R . n A 1 426 ARG 426 301 ? ? ? R . n A 1 427 GLU 427 302 ? ? ? R . n A 1 428 GLU 428 303 ? ? ? R . n A 1 429 PRO 429 304 ? ? ? R . n A 1 430 GLU 430 305 ? ? ? R . n A 1 431 LEU 431 306 ? ? ? R . n A 1 432 GLU 432 307 ? ? ? R . n A 1 433 GLY 433 308 ? ? ? R . n A 1 434 GLY 434 309 ? ? ? R . n A 1 435 GLU 435 310 ? ? ? R . n A 1 436 THR 436 311 ? ? ? R . n A 1 437 PRO 437 312 ? ? ? R . n A 1 438 THR 438 313 ? ? ? R . n A 1 439 VAL 439 314 ? ? ? R . n A 1 440 GLY 440 315 ? ? ? R . n A 1 441 THR 441 316 ? ? ? R . n A 1 442 ASN 442 317 ? ? ? R . n A 1 443 GLU 443 318 ? ? ? R . n A 1 444 MET 444 319 ? ? ? R . n A 1 445 GLY 445 320 ? ? ? R . n A 1 446 ALA 446 321 ? ? ? R . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email atsu@cespi.nagoya-u.ac.j _pdbx_contact_author.name_first atsunori _pdbx_contact_author.name_last Oshima _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1174-1368 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BAL 1 1001 1001 BAL BAL R . C 3 PLM 1 1002 1003 PLM PLM R . D 3 PLM 1 1003 1004 PLM PLM R . E 3 PLM 1 1004 1005 PLM PLM R . F 3 PLM 1 1005 1006 PLM PLM R . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-07-20 2 'Structure model' 1 1 2022-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7Y14 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7Y14 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7Y14 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 97282 _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'beta-alanine bound MrgD-Gi complex with the scFv16' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7Y14 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 0.01 _em_imaging.nominal_defocus_max 1900 _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ;blot time 3 seconds blot force 5 ; _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7Y14 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7Y14 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7Y14 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE R 61 ? ? -99.59 35.28 2 1 ASN R 92 ? ? -141.87 -17.71 3 1 VAL R 189 ? ? -122.65 -58.43 4 1 TRP R 212 ? ? -91.45 -60.80 5 1 VAL R 243 ? ? -126.29 -57.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 R ARG 55 ? CG ? A ARG 180 CG 2 1 Y 1 R ARG 55 ? CD ? A ARG 180 CD 3 1 Y 1 R ARG 55 ? NE ? A ARG 180 NE 4 1 Y 1 R ARG 55 ? CZ ? A ARG 180 CZ 5 1 Y 1 R ARG 55 ? NH1 ? A ARG 180 NH1 6 1 Y 1 R ARG 55 ? NH2 ? A ARG 180 NH2 7 1 Y 1 R ARG 58 ? CG ? A ARG 183 CG 8 1 Y 1 R ARG 58 ? CD ? A ARG 183 CD 9 1 Y 1 R ARG 58 ? NE ? A ARG 183 NE 10 1 Y 1 R ARG 58 ? CZ ? A ARG 183 CZ 11 1 Y 1 R ARG 58 ? NH1 ? A ARG 183 NH1 12 1 Y 1 R ARG 58 ? NH2 ? A ARG 183 NH2 13 1 Y 1 R VAL 91 ? CG1 ? A VAL 216 CG1 14 1 Y 1 R VAL 91 ? CG2 ? A VAL 216 CG2 15 1 Y 1 R ASN 92 ? CG ? A ASN 217 CG 16 1 Y 1 R ASN 92 ? OD1 ? A ASN 217 OD1 17 1 Y 1 R ASN 92 ? ND2 ? A ASN 217 ND2 18 1 Y 1 R LYS 166 ? CG ? A LYS 291 CG 19 1 Y 1 R LYS 166 ? CD ? A LYS 291 CD 20 1 Y 1 R LYS 166 ? CE ? A LYS 291 CE 21 1 Y 1 R LYS 166 ? NZ ? A LYS 291 NZ 22 1 Y 1 R LYS 169 ? CG ? A LYS 294 CG 23 1 Y 1 R LYS 169 ? CD ? A LYS 294 CD 24 1 Y 1 R LYS 169 ? CE ? A LYS 294 CE 25 1 Y 1 R LYS 169 ? NZ ? A LYS 294 NZ 26 1 Y 1 R GLU 172 ? CG ? A GLU 297 CG 27 1 Y 1 R GLU 172 ? CD ? A GLU 297 CD 28 1 Y 1 R GLU 172 ? OE1 ? A GLU 297 OE1 29 1 Y 1 R GLU 172 ? OE2 ? A GLU 297 OE2 30 1 Y 1 R ASP 173 ? CG ? A ASP 298 CG 31 1 Y 1 R ASP 173 ? OD1 ? A ASP 298 OD1 32 1 Y 1 R ASP 173 ? OD2 ? A ASP 298 OD2 33 1 Y 1 R MET 187 ? CG ? A MET 312 CG 34 1 Y 1 R MET 187 ? SD ? A MET 312 SD 35 1 Y 1 R MET 187 ? CE ? A MET 312 CE 36 1 Y 1 R GLN 210 ? CG ? A GLN 335 CG 37 1 Y 1 R GLN 210 ? CD ? A GLN 335 CD 38 1 Y 1 R GLN 210 ? OE1 ? A GLN 335 OE1 39 1 Y 1 R GLN 210 ? NE2 ? A GLN 335 NE2 40 1 Y 1 R GLU 252 ? CG ? A GLU 377 CG 41 1 Y 1 R GLU 252 ? CD ? A GLU 377 CD 42 1 Y 1 R GLU 252 ? OE1 ? A GLU 377 OE1 43 1 Y 1 R GLU 252 ? OE2 ? A GLU 377 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R MET -124 ? A MET 1 2 1 Y 1 R LYS -123 ? A LYS 2 3 1 Y 1 R THR -122 ? A THR 3 4 1 Y 1 R ILE -121 ? A ILE 4 5 1 Y 1 R ILE -120 ? A ILE 5 6 1 Y 1 R ALA -119 ? A ALA 6 7 1 Y 1 R LEU -118 ? A LEU 7 8 1 Y 1 R SER -117 ? A SER 8 9 1 Y 1 R TYR -116 ? A TYR 9 10 1 Y 1 R ILE -115 ? A ILE 10 11 1 Y 1 R PHE -114 ? A PHE 11 12 1 Y 1 R CYS -113 ? A CYS 12 13 1 Y 1 R LEU -112 ? A LEU 13 14 1 Y 1 R VAL -111 ? A VAL 14 15 1 Y 1 R PHE -110 ? A PHE 15 16 1 Y 1 R ALA -109 ? A ALA 16 17 1 Y 1 R ASP -108 ? A ASP 17 18 1 Y 1 R TYR -107 ? A TYR 18 19 1 Y 1 R LYS -106 ? A LYS 19 20 1 Y 1 R ASP -105 ? A ASP 20 21 1 Y 1 R ASP -104 ? A ASP 21 22 1 Y 1 R ASP -103 ? A ASP 22 23 1 Y 1 R ASP -102 ? A ASP 23 24 1 Y 1 R LYS -101 ? A LYS 24 25 1 Y 1 R ALA -100 ? A ALA 25 26 1 Y 1 R ASP -99 ? A ASP 26 27 1 Y 1 R LEU -98 ? A LEU 27 28 1 Y 1 R GLU -97 ? A GLU 28 29 1 Y 1 R ASP -96 ? A ASP 29 30 1 Y 1 R ASN -95 ? A ASN 30 31 1 Y 1 R TRP -94 ? A TRP 31 32 1 Y 1 R GLU -93 ? A GLU 32 33 1 Y 1 R THR -92 ? A THR 33 34 1 Y 1 R LEU -91 ? A LEU 34 35 1 Y 1 R ASN -90 ? A ASN 35 36 1 Y 1 R ASP -89 ? A ASP 36 37 1 Y 1 R ASN -88 ? A ASN 37 38 1 Y 1 R LEU -87 ? A LEU 38 39 1 Y 1 R LYS -86 ? A LYS 39 40 1 Y 1 R VAL -85 ? A VAL 40 41 1 Y 1 R ILE -84 ? A ILE 41 42 1 Y 1 R GLU -83 ? A GLU 42 43 1 Y 1 R LYS -82 ? A LYS 43 44 1 Y 1 R ALA -81 ? A ALA 44 45 1 Y 1 R ASP -80 ? A ASP 45 46 1 Y 1 R ASN -79 ? A ASN 46 47 1 Y 1 R ALA -78 ? A ALA 47 48 1 Y 1 R ALA -77 ? A ALA 48 49 1 Y 1 R GLN -76 ? A GLN 49 50 1 Y 1 R VAL -75 ? A VAL 50 51 1 Y 1 R LYS -74 ? A LYS 51 52 1 Y 1 R ASP -73 ? A ASP 52 53 1 Y 1 R ALA -72 ? A ALA 53 54 1 Y 1 R LEU -71 ? A LEU 54 55 1 Y 1 R THR -70 ? A THR 55 56 1 Y 1 R LYS -69 ? A LYS 56 57 1 Y 1 R MET -68 ? A MET 57 58 1 Y 1 R ARG -67 ? A ARG 58 59 1 Y 1 R ALA -66 ? A ALA 59 60 1 Y 1 R ALA -65 ? A ALA 60 61 1 Y 1 R ALA -64 ? A ALA 61 62 1 Y 1 R LEU -63 ? A LEU 62 63 1 Y 1 R ASP -62 ? A ASP 63 64 1 Y 1 R ALA -61 ? A ALA 64 65 1 Y 1 R GLN -60 ? A GLN 65 66 1 Y 1 R LYS -59 ? A LYS 66 67 1 Y 1 R ALA -58 ? A ALA 67 68 1 Y 1 R THR -57 ? A THR 68 69 1 Y 1 R PRO -56 ? A PRO 69 70 1 Y 1 R PRO -55 ? A PRO 70 71 1 Y 1 R LYS -54 ? A LYS 71 72 1 Y 1 R LEU -53 ? A LEU 72 73 1 Y 1 R GLU -52 ? A GLU 73 74 1 Y 1 R ASP -51 ? A ASP 74 75 1 Y 1 R LYS -50 ? A LYS 75 76 1 Y 1 R SER -49 ? A SER 76 77 1 Y 1 R PRO -48 ? A PRO 77 78 1 Y 1 R ASP -47 ? A ASP 78 79 1 Y 1 R SER -46 ? A SER 79 80 1 Y 1 R PRO -45 ? A PRO 80 81 1 Y 1 R GLU -44 ? A GLU 81 82 1 Y 1 R MET -43 ? A MET 82 83 1 Y 1 R LYS -42 ? A LYS 83 84 1 Y 1 R ASP -41 ? A ASP 84 85 1 Y 1 R PHE -40 ? A PHE 85 86 1 Y 1 R ARG -39 ? A ARG 86 87 1 Y 1 R HIS -38 ? A HIS 87 88 1 Y 1 R GLY -37 ? A GLY 88 89 1 Y 1 R PHE -36 ? A PHE 89 90 1 Y 1 R ASP -35 ? A ASP 90 91 1 Y 1 R ILE -34 ? A ILE 91 92 1 Y 1 R LEU -33 ? A LEU 92 93 1 Y 1 R VAL -32 ? A VAL 93 94 1 Y 1 R GLY -31 ? A GLY 94 95 1 Y 1 R GLN -30 ? A GLN 95 96 1 Y 1 R ILE -29 ? A ILE 96 97 1 Y 1 R ASP -28 ? A ASP 97 98 1 Y 1 R ASP -27 ? A ASP 98 99 1 Y 1 R ALA -26 ? A ALA 99 100 1 Y 1 R LEU -25 ? A LEU 100 101 1 Y 1 R LYS -24 ? A LYS 101 102 1 Y 1 R LEU -23 ? A LEU 102 103 1 Y 1 R ALA -22 ? A ALA 103 104 1 Y 1 R ASN -21 ? A ASN 104 105 1 Y 1 R GLU -20 ? A GLU 105 106 1 Y 1 R GLY -19 ? A GLY 106 107 1 Y 1 R LYS -18 ? A LYS 107 108 1 Y 1 R VAL -17 ? A VAL 108 109 1 Y 1 R LYS -16 ? A LYS 109 110 1 Y 1 R GLU -15 ? A GLU 110 111 1 Y 1 R ALA -14 ? A ALA 111 112 1 Y 1 R GLN -13 ? A GLN 112 113 1 Y 1 R ALA -12 ? A ALA 113 114 1 Y 1 R ALA -11 ? A ALA 114 115 1 Y 1 R ALA -10 ? A ALA 115 116 1 Y 1 R GLU -9 ? A GLU 116 117 1 Y 1 R GLN -8 ? A GLN 117 118 1 Y 1 R LEU -7 ? A LEU 118 119 1 Y 1 R LYS -6 ? A LYS 119 120 1 Y 1 R THR -5 ? A THR 120 121 1 Y 1 R THR -4 ? A THR 121 122 1 Y 1 R ARG -3 ? A ARG 122 123 1 Y 1 R ASN -2 ? A ASN 123 124 1 Y 1 R ALA -1 ? A ALA 124 125 1 Y 1 R TYR 0 ? A TYR 125 126 1 Y 1 R ILE 1 ? A ILE 126 127 1 Y 1 R GLN 2 ? A GLN 127 128 1 Y 1 R LYS 3 ? A LYS 128 129 1 Y 1 R TYR 4 ? A TYR 129 130 1 Y 1 R LEU 5 ? A LEU 130 131 1 Y 1 R ASN 6 ? A ASN 131 132 1 Y 1 R SER 7 ? A SER 132 133 1 Y 1 R SER 8 ? A SER 133 134 1 Y 1 R GLY 9 ? A GLY 134 135 1 Y 1 R THR 10 ? A THR 135 136 1 Y 1 R VAL 11 ? A VAL 136 137 1 Y 1 R GLU 12 ? A GLU 137 138 1 Y 1 R SER 13 ? A SER 138 139 1 Y 1 R ALA 14 ? A ALA 139 140 1 Y 1 R LEU 15 ? A LEU 140 141 1 Y 1 R ASN 16 ? A ASN 141 142 1 Y 1 R TYR 17 ? A TYR 142 143 1 Y 1 R SER 18 ? A SER 143 144 1 Y 1 R ARG 19 ? A ARG 144 145 1 Y 1 R GLY 20 ? A GLY 145 146 1 Y 1 R SER 21 ? A SER 146 147 1 Y 1 R ARG 286 ? A ARG 411 148 1 Y 1 R LEU 287 ? A LEU 412 149 1 Y 1 R PRO 288 ? A PRO 413 150 1 Y 1 R THR 289 ? A THR 414 151 1 Y 1 R ARG 290 ? A ARG 415 152 1 Y 1 R SER 291 ? A SER 416 153 1 Y 1 R LEU 292 ? A LEU 417 154 1 Y 1 R GLY 293 ? A GLY 418 155 1 Y 1 R THR 294 ? A THR 419 156 1 Y 1 R VAL 295 ? A VAL 420 157 1 Y 1 R LEU 296 ? A LEU 421 158 1 Y 1 R GLN 297 ? A GLN 422 159 1 Y 1 R GLN 298 ? A GLN 423 160 1 Y 1 R ALA 299 ? A ALA 424 161 1 Y 1 R LEU 300 ? A LEU 425 162 1 Y 1 R ARG 301 ? A ARG 426 163 1 Y 1 R GLU 302 ? A GLU 427 164 1 Y 1 R GLU 303 ? A GLU 428 165 1 Y 1 R PRO 304 ? A PRO 429 166 1 Y 1 R GLU 305 ? A GLU 430 167 1 Y 1 R LEU 306 ? A LEU 431 168 1 Y 1 R GLU 307 ? A GLU 432 169 1 Y 1 R GLY 308 ? A GLY 433 170 1 Y 1 R GLY 309 ? A GLY 434 171 1 Y 1 R GLU 310 ? A GLU 435 172 1 Y 1 R THR 311 ? A THR 436 173 1 Y 1 R PRO 312 ? A PRO 437 174 1 Y 1 R THR 313 ? A THR 438 175 1 Y 1 R VAL 314 ? A VAL 439 176 1 Y 1 R GLY 315 ? A GLY 440 177 1 Y 1 R THR 316 ? A THR 441 178 1 Y 1 R ASN 317 ? A ASN 442 179 1 Y 1 R GLU 318 ? A GLU 443 180 1 Y 1 R MET 319 ? A MET 444 181 1 Y 1 R GLY 320 ? A GLY 445 182 1 Y 1 R ALA 321 ? A ALA 446 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector 'The Microscope implicated Cs corrector.' _em_imaging_optics.details ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 'MODEL FITTING' ? 'UCSF ChimeraX' ? ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? 11 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 13 CLASSIFICATION ? ? ? 1 ? ? 14 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 10 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan JP19H03165 1 'Japan Agency for Medical Research and Development (AMED)' Japan JP21am0101074 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id BAL _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id BAL _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BETA-ALANINE BAL 3 'PALMITIC ACID' PLM # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #