data_7Y56 # _entry.id 7Y56 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Y56 pdb_00007y56 10.2210/pdb7y56/pdb WWPDB D_1300030283 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Y56 _pdbx_database_status.recvd_initial_deposition_date 2022-06-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, X.Y.' 1 0000-0001-9860-3114 'Gan, J.H.' 2 0000-0002-8438-8852 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Comput Struct Biotechnol J' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2001-0370 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 20 _citation.language ? _citation.page_first 4645 _citation.page_last 4655 _citation.title 'Structures and implications of the nuclease domain of human parvovirus B19 NS1 protein.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.csbj.2022.08.047 _citation.pdbx_database_id_PubMed 36090819 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.' 1 ? primary 'Shao, Z.' 2 ? primary 'Gao, Y.' 3 ? primary 'Fan, B.' 4 ? primary 'Yang, J.' 5 ? primary 'Chen, X.' 6 ? primary 'Zhao, X.' 7 ? primary 'Shao, Q.' 8 ? primary 'Zhang, W.' 9 ? primary 'Cao, C.' 10 ? primary 'Liu, H.' 11 ? primary 'Gan, J.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7Y56 _cell.details ? _cell.formula_units_Z ? _cell.length_a 69.360 _cell.length_a_esd ? _cell.length_b 69.360 _cell.length_b_esd ? _cell.length_c 108.856 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7Y56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NS1 protein' 19997.445 1 ? ? 'nuclease domain' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 184 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSELFRGVLQVSSNVLDCANDNWWCSLLDLDTSDWEPLTHTNRL(MSE)AIYLSSVASKLDFTGGPLAGCLYFFQVECNK FEEGYHIHVVIGGPGLNPRNLTVCVEGLFNNVLYHLVTGNVKLKFLPG(MSE)TTKGKYFRDGEQFIENYL(MSE)KKIP LNVVWCVTNIDGYIDTCISATFRRGACHA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSELFRGVLQVSSNVLDCANDNWWCSLLDLDTSDWEPLTHTNRLMAIYLSSVASKLDFTGGPLAGCLYFFQVECNKFEEG YHIHVVIGGPGLNPRNLTVCVEGLFNNVLYHLVTGNVKLKFLPGMTTKGKYFRDGEQFIENYLMKKIPLNVVWCVTNIDG YIDTCISATFRRGACHA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLU n 1 4 LEU n 1 5 PHE n 1 6 ARG n 1 7 GLY n 1 8 VAL n 1 9 LEU n 1 10 GLN n 1 11 VAL n 1 12 SER n 1 13 SER n 1 14 ASN n 1 15 VAL n 1 16 LEU n 1 17 ASP n 1 18 CYS n 1 19 ALA n 1 20 ASN n 1 21 ASP n 1 22 ASN n 1 23 TRP n 1 24 TRP n 1 25 CYS n 1 26 SER n 1 27 LEU n 1 28 LEU n 1 29 ASP n 1 30 LEU n 1 31 ASP n 1 32 THR n 1 33 SER n 1 34 ASP n 1 35 TRP n 1 36 GLU n 1 37 PRO n 1 38 LEU n 1 39 THR n 1 40 HIS n 1 41 THR n 1 42 ASN n 1 43 ARG n 1 44 LEU n 1 45 MSE n 1 46 ALA n 1 47 ILE n 1 48 TYR n 1 49 LEU n 1 50 SER n 1 51 SER n 1 52 VAL n 1 53 ALA n 1 54 SER n 1 55 LYS n 1 56 LEU n 1 57 ASP n 1 58 PHE n 1 59 THR n 1 60 GLY n 1 61 GLY n 1 62 PRO n 1 63 LEU n 1 64 ALA n 1 65 GLY n 1 66 CYS n 1 67 LEU n 1 68 TYR n 1 69 PHE n 1 70 PHE n 1 71 GLN n 1 72 VAL n 1 73 GLU n 1 74 CYS n 1 75 ASN n 1 76 LYS n 1 77 PHE n 1 78 GLU n 1 79 GLU n 1 80 GLY n 1 81 TYR n 1 82 HIS n 1 83 ILE n 1 84 HIS n 1 85 VAL n 1 86 VAL n 1 87 ILE n 1 88 GLY n 1 89 GLY n 1 90 PRO n 1 91 GLY n 1 92 LEU n 1 93 ASN n 1 94 PRO n 1 95 ARG n 1 96 ASN n 1 97 LEU n 1 98 THR n 1 99 VAL n 1 100 CYS n 1 101 VAL n 1 102 GLU n 1 103 GLY n 1 104 LEU n 1 105 PHE n 1 106 ASN n 1 107 ASN n 1 108 VAL n 1 109 LEU n 1 110 TYR n 1 111 HIS n 1 112 LEU n 1 113 VAL n 1 114 THR n 1 115 GLY n 1 116 ASN n 1 117 VAL n 1 118 LYS n 1 119 LEU n 1 120 LYS n 1 121 PHE n 1 122 LEU n 1 123 PRO n 1 124 GLY n 1 125 MSE n 1 126 THR n 1 127 THR n 1 128 LYS n 1 129 GLY n 1 130 LYS n 1 131 TYR n 1 132 PHE n 1 133 ARG n 1 134 ASP n 1 135 GLY n 1 136 GLU n 1 137 GLN n 1 138 PHE n 1 139 ILE n 1 140 GLU n 1 141 ASN n 1 142 TYR n 1 143 LEU n 1 144 MSE n 1 145 LYS n 1 146 LYS n 1 147 ILE n 1 148 PRO n 1 149 LEU n 1 150 ASN n 1 151 VAL n 1 152 VAL n 1 153 TRP n 1 154 CYS n 1 155 VAL n 1 156 THR n 1 157 ASN n 1 158 ILE n 1 159 ASP n 1 160 GLY n 1 161 TYR n 1 162 ILE n 1 163 ASP n 1 164 THR n 1 165 CYS n 1 166 ILE n 1 167 SER n 1 168 ALA n 1 169 THR n 1 170 PHE n 1 171 ARG n 1 172 ARG n 1 173 GLY n 1 174 ALA n 1 175 CYS n 1 176 HIS n 1 177 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 177 _entity_src_gen.gene_src_common_name 'HPV B19' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NS1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human parvovirus B19' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10798 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q75U85_PAVHB _struct_ref.pdbx_db_accession Q75U85 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ELFRGVLQVSSNVLDCANDNWWCSLLDLDTSDWEPLTHTNRLMAIYLSSVASKLDFTGGPLAGCLYFFQVECNKFEEGYH IHVVIGGPGLNPRNLTVCVEGLFNNVLYHLVTGNVKLKFLPGMTTKGKYFRDGEQFIENYLMKKIPLNVVWCVTNIDGYI DTCISATFRRGACHA ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7Y56 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 177 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q75U85 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 176 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 176 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7Y56 GLY A 1 ? UNP Q75U85 ? ? 'expression tag' 0 1 1 7Y56 SER A 2 ? UNP Q75U85 ? ? 'expression tag' 1 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Y56 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.30 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Ammonium phosphate (dibasic) and Sodium acetate/Acetic acid pH 4.2 buffer' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 17.920 _reflns.entry_id 7Y56 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.750 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 50954 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.600 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.931 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.098 _reflns.pdbx_Rpim_I_all 0.027 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 694290 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.750 1.780 ? ? ? ? ? ? 2552 100.000 ? ? ? ? 0.558 ? ? ? ? ? ? ? ? 12.400 ? 0.448 ? ? 0.582 0.164 ? 1 1 0.957 ? ? ? ? ? ? ? ? ? ? 1.780 1.810 ? ? ? ? ? ? 2534 100.000 ? ? ? ? 0.495 ? ? ? ? ? ? ? ? 13.000 ? 0.447 ? ? 0.516 0.142 ? 2 1 0.964 ? ? ? ? ? ? ? ? ? ? 1.810 1.850 ? ? ? ? ? ? 2518 100.000 ? ? ? ? 0.440 ? ? ? ? ? ? ? ? 13.500 ? 0.470 ? ? 0.457 0.124 ? 3 1 0.973 ? ? ? ? ? ? ? ? ? ? 1.850 1.890 ? ? ? ? ? ? 2561 100.000 ? ? ? ? 0.395 ? ? ? ? ? ? ? ? 13.900 ? 0.487 ? ? 0.410 0.110 ? 4 1 0.977 ? ? ? ? ? ? ? ? ? ? 1.890 1.930 ? ? ? ? ? ? 2559 100.000 ? ? ? ? 0.372 ? ? ? ? ? ? ? ? 13.900 ? 0.527 ? ? 0.386 0.103 ? 5 1 0.980 ? ? ? ? ? ? ? ? ? ? 1.930 1.970 ? ? ? ? ? ? 2555 100.000 ? ? ? ? 0.286 ? ? ? ? ? ? ? ? 13.800 ? 0.523 ? ? 0.297 0.080 ? 6 1 0.986 ? ? ? ? ? ? ? ? ? ? 1.970 2.020 ? ? ? ? ? ? 2525 100.000 ? ? ? ? 0.233 ? ? ? ? ? ? ? ? 13.600 ? 0.519 ? ? 0.242 0.065 ? 7 1 0.989 ? ? ? ? ? ? ? ? ? ? 2.020 2.070 ? ? ? ? ? ? 2558 100.000 ? ? ? ? 0.230 ? ? ? ? ? ? ? ? 13.400 ? 0.595 ? ? 0.239 0.065 ? 8 1 0.990 ? ? ? ? ? ? ? ? ? ? 2.070 2.140 ? ? ? ? ? ? 2526 100.000 ? ? ? ? 0.175 ? ? ? ? ? ? ? ? 12.700 ? 0.576 ? ? 0.182 0.051 ? 9 1 0.992 ? ? ? ? ? ? ? ? ? ? 2.140 2.200 ? ? ? ? ? ? 2563 100.000 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 13.100 ? 0.558 ? ? 0.164 0.045 ? 10 1 0.993 ? ? ? ? ? ? ? ? ? ? 2.200 2.280 ? ? ? ? ? ? 2564 100.000 ? ? ? ? 0.152 ? ? ? ? ? ? ? ? 14.100 ? 0.566 ? ? 0.158 0.042 ? 11 1 0.995 ? ? ? ? ? ? ? ? ? ? 2.280 2.380 ? ? ? ? ? ? 2539 100.000 ? ? ? ? 0.120 ? ? ? ? ? ? ? ? 14.200 ? 0.535 ? ? 0.125 0.033 ? 12 1 0.996 ? ? ? ? ? ? ? ? ? ? 2.380 2.480 ? ? ? ? ? ? 2547 100.000 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 14.100 ? 0.557 ? ? 0.116 0.031 ? 13 1 0.997 ? ? ? ? ? ? ? ? ? ? 2.480 2.610 ? ? ? ? ? ? 2530 100.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 13.900 ? 0.597 ? ? 0.101 0.027 ? 14 1 0.995 ? ? ? ? ? ? ? ? ? ? 2.610 2.780 ? ? ? ? ? ? 2577 100.000 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 13.100 ? 0.694 ? ? 0.090 0.025 ? 15 1 0.996 ? ? ? ? ? ? ? ? ? ? 2.780 2.990 ? ? ? ? ? ? 2537 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 14.000 ? 0.686 ? ? 0.074 0.020 ? 16 1 0.996 ? ? ? ? ? ? ? ? ? ? 2.990 3.290 ? ? ? ? ? ? 2548 100.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 14.500 ? 0.872 ? ? 0.064 0.017 ? 17 1 0.993 ? ? ? ? ? ? ? ? ? ? 3.290 3.770 ? ? ? ? ? ? 2554 100.000 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 14.000 ? 1.303 ? ? 0.054 0.014 ? 18 1 0.995 ? ? ? ? ? ? ? ? ? ? 3.770 4.750 ? ? ? ? ? ? 2546 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 13.500 ? 2.137 ? ? 0.049 0.013 ? 19 1 0.991 ? ? ? ? ? ? ? ? ? ? 4.750 50.000 ? ? ? ? ? ? 2561 99.700 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 13.800 ? 5.378 ? ? 0.080 0.021 ? 20 1 0.952 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 52.880 _refine.B_iso_mean 21.3846 _refine.B_iso_min 10.240 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7Y56 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7520 _refine.ls_d_res_low 32.1510 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27340 _refine.ls_number_reflns_R_free 1379 _refine.ls_number_reflns_R_work 25961 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7000 _refine.ls_percent_reflns_R_free 5.0400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1810 _refine.ls_R_factor_R_free 0.2022 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1798 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.4900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.7520 _refine_hist.d_res_low 32.1510 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 1565 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 174 _refine_hist.pdbx_B_iso_mean_ligand 31.07 _refine_hist.pdbx_B_iso_mean_solvent 32.08 _refine_hist.pdbx_number_atoms_protein 1375 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1428 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.843 ? 1944 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.055 ? 217 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 247 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 2.535 ? 1140 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7521 1.8147 . . 146 2485 98.0000 . . . 0.2171 0.0000 0.1961 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8147 1.8873 . . 131 2555 100.0000 . . . 0.2428 0.0000 0.1959 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8873 1.9732 . . 114 2579 100.0000 . . . 0.2051 0.0000 0.1851 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9732 2.0772 . . 125 2575 100.0000 . . . 0.2396 0.0000 0.1827 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0772 2.2074 . . 157 2531 100.0000 . . . 0.2278 0.0000 0.1736 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2074 2.3777 . . 133 2597 100.0000 . . . 0.2036 0.0000 0.1753 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3777 2.6169 . . 151 2566 100.0000 . . . 0.1984 0.0000 0.1805 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6169 2.9954 . . 139 2627 100.0000 . . . 0.1960 0.0000 0.1845 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9954 3.7729 . . 143 2654 100.0000 . . . 0.1961 0.0000 0.1751 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7729 30 . . 140 2792 99.0000 . . . 0.1828 0.0000 0.1775 . . . . . . . . . . . # _struct.entry_id 7Y56 _struct.title 'Crystal structure of NS1 nuclease domain in P41212 space group' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Y56 _struct_keywords.text 'NS1, nuclease domain, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 12 ? CYS A 18 ? SER A 11 CYS A 17 1 ? 7 HELX_P HELX_P2 AA2 ASN A 20 ? CYS A 25 ? ASN A 19 CYS A 24 1 ? 6 HELX_P HELX_P3 AA3 THR A 39 ? PHE A 58 ? THR A 38 PHE A 57 1 ? 20 HELX_P HELX_P4 AA4 THR A 59 ? ALA A 64 ? THR A 58 ALA A 63 5 ? 6 HELX_P HELX_P5 AA5 ASN A 96 ? TYR A 110 ? ASN A 95 TYR A 109 1 ? 15 HELX_P HELX_P6 AA6 ASP A 134 ? TYR A 142 ? ASP A 133 TYR A 141 1 ? 9 HELX_P HELX_P7 AA7 LEU A 143 ? LYS A 146 ? LEU A 142 LYS A 145 5 ? 4 HELX_P HELX_P8 AA8 ILE A 158 ? ILE A 162 ? ILE A 157 ILE A 161 5 ? 5 HELX_P HELX_P9 AA9 SER A 167 ? CYS A 175 ? SER A 166 CYS A 174 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 44 C ? ? ? 1_555 A MSE 45 N ? ? A LEU 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 45 C ? ? ? 1_555 A ALA 46 N ? ? A MSE 44 A ALA 45 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A GLY 124 C ? ? ? 1_555 A MSE 125 N ? ? A GLY 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 125 C ? ? ? 1_555 A THR 126 N ? ? A MSE 124 A THR 125 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A LEU 143 C ? ? ? 1_555 A MSE 144 N ? ? A LEU 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MSE 144 C ? ? ? 1_555 A LYS 145 N ? ? A MSE 143 A LYS 144 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 147 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LEU _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LEU _struct_mon_prot_cis.pdbx_auth_seq_id_2 148 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.09 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 121 ? PRO A 123 ? PHE A 120 PRO A 122 AA1 2 PHE A 5 ? VAL A 11 ? PHE A 4 VAL A 10 AA1 3 TYR A 81 ? GLY A 88 ? TYR A 80 GLY A 87 AA1 4 LEU A 67 ? GLU A 73 ? LEU A 66 GLU A 72 AA1 5 VAL A 151 ? THR A 156 ? VAL A 150 THR A 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 122 ? O LEU A 121 N VAL A 8 ? N VAL A 7 AA1 2 3 N GLY A 7 ? N GLY A 6 O VAL A 85 ? O VAL A 84 AA1 3 4 O HIS A 84 ? O HIS A 83 N GLN A 71 ? N GLN A 70 AA1 4 5 N PHE A 70 ? N PHE A 69 O VAL A 155 ? O VAL A 154 # _atom_sites.entry_id 7Y56 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014418 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014418 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009186 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 ARG 6 5 5 ARG ARG A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 ASN 14 13 13 ASN ASN A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 CYS 18 17 17 CYS CYS A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 TRP 23 22 22 TRP TRP A . n A 1 24 TRP 24 23 23 TRP TRP A . n A 1 25 CYS 25 24 24 CYS CYS A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 THR 32 31 31 THR THR A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 TRP 35 34 34 TRP TRP A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 MSE 45 44 44 MSE MSE A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 TYR 48 47 47 TYR TYR A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 ASP 57 56 56 ASP ASP A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 CYS 66 65 65 CYS CYS A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 TYR 68 67 67 TYR TYR A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 CYS 74 73 73 CYS CYS A . n A 1 75 ASN 75 74 74 ASN ASN A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 GLU 78 77 77 GLU GLU A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 HIS 82 81 81 HIS HIS A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 HIS 84 83 83 HIS HIS A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 ILE 87 86 86 ILE ILE A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 GLY 89 88 88 GLY GLY A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 PRO 94 93 93 PRO PRO A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 ASN 96 95 95 ASN ASN A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 CYS 100 99 99 CYS CYS A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 GLY 103 102 102 GLY GLY A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 ASN 107 106 106 ASN ASN A . n A 1 108 VAL 108 107 107 VAL VAL A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 TYR 110 109 109 TYR TYR A . n A 1 111 HIS 111 110 110 HIS HIS A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 ASN 116 115 115 ASN ASN A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 PHE 121 120 120 PHE PHE A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 GLY 124 123 123 GLY GLY A . n A 1 125 MSE 125 124 124 MSE MSE A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 LYS 128 127 127 LYS LYS A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 PHE 132 131 131 PHE PHE A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 ASP 134 133 133 ASP ASP A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 GLU 136 135 135 GLU GLU A . n A 1 137 GLN 137 136 136 GLN GLN A . n A 1 138 PHE 138 137 137 PHE PHE A . n A 1 139 ILE 139 138 138 ILE ILE A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 ASN 141 140 140 ASN ASN A . n A 1 142 TYR 142 141 141 TYR TYR A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 MSE 144 143 143 MSE MSE A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 PRO 148 147 147 PRO PRO A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 ASN 150 149 149 ASN ASN A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 VAL 152 151 151 VAL VAL A . n A 1 153 TRP 153 152 152 TRP TRP A . n A 1 154 CYS 154 153 153 CYS CYS A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 THR 156 155 155 THR THR A . n A 1 157 ASN 157 156 156 ASN ASN A . n A 1 158 ILE 158 157 157 ILE ILE A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 TYR 161 160 160 TYR TYR A . n A 1 162 ILE 162 161 161 ILE ILE A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 CYS 165 164 164 CYS CYS A . n A 1 166 ILE 166 165 165 ILE ILE A . n A 1 167 SER 167 166 166 SER SER A . n A 1 168 ALA 168 167 167 ALA ALA A . n A 1 169 THR 169 168 168 THR THR A . n A 1 170 PHE 170 169 169 PHE PHE A . n A 1 171 ARG 171 170 170 ARG ARG A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 GLY 173 172 172 GLY GLY A . n A 1 174 ALA 174 173 173 ALA ALA A . n A 1 175 CYS 175 174 174 CYS CYS A . n A 1 176 HIS 176 175 ? ? ? A . n A 1 177 ALA 177 176 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ganjhh@fudan.edu.cn _pdbx_contact_author.name_first Jianhua _pdbx_contact_author.name_last Gan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8438-8852 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 1 GOL GOL A . C 3 HOH 1 301 113 HOH HOH A . C 3 HOH 2 302 224 HOH HOH A . C 3 HOH 3 303 217 HOH HOH A . C 3 HOH 4 304 171 HOH HOH A . C 3 HOH 5 305 47 HOH HOH A . C 3 HOH 6 306 75 HOH HOH A . C 3 HOH 7 307 46 HOH HOH A . C 3 HOH 8 308 157 HOH HOH A . C 3 HOH 9 309 228 HOH HOH A . C 3 HOH 10 310 235 HOH HOH A . C 3 HOH 11 311 110 HOH HOH A . C 3 HOH 12 312 33 HOH HOH A . C 3 HOH 13 313 149 HOH HOH A . C 3 HOH 14 314 38 HOH HOH A . C 3 HOH 15 315 214 HOH HOH A . C 3 HOH 16 316 160 HOH HOH A . C 3 HOH 17 317 114 HOH HOH A . C 3 HOH 18 318 115 HOH HOH A . C 3 HOH 19 319 77 HOH HOH A . C 3 HOH 20 320 39 HOH HOH A . C 3 HOH 21 321 134 HOH HOH A . C 3 HOH 22 322 35 HOH HOH A . C 3 HOH 23 323 12 HOH HOH A . C 3 HOH 24 324 73 HOH HOH A . C 3 HOH 25 325 93 HOH HOH A . C 3 HOH 26 326 28 HOH HOH A . C 3 HOH 27 327 222 HOH HOH A . C 3 HOH 28 328 229 HOH HOH A . C 3 HOH 29 329 50 HOH HOH A . C 3 HOH 30 330 80 HOH HOH A . C 3 HOH 31 331 55 HOH HOH A . C 3 HOH 32 332 231 HOH HOH A . C 3 HOH 33 333 84 HOH HOH A . C 3 HOH 34 334 48 HOH HOH A . C 3 HOH 35 335 246 HOH HOH A . C 3 HOH 36 336 42 HOH HOH A . C 3 HOH 37 337 72 HOH HOH A . C 3 HOH 38 338 216 HOH HOH A . C 3 HOH 39 339 74 HOH HOH A . C 3 HOH 40 340 13 HOH HOH A . C 3 HOH 41 341 81 HOH HOH A . C 3 HOH 42 342 220 HOH HOH A . C 3 HOH 43 343 34 HOH HOH A . C 3 HOH 44 344 142 HOH HOH A . C 3 HOH 45 345 239 HOH HOH A . C 3 HOH 46 346 40 HOH HOH A . C 3 HOH 47 347 1 HOH HOH A . C 3 HOH 48 348 106 HOH HOH A . C 3 HOH 49 349 122 HOH HOH A . C 3 HOH 50 350 54 HOH HOH A . C 3 HOH 51 351 210 HOH HOH A . C 3 HOH 52 352 120 HOH HOH A . C 3 HOH 53 353 44 HOH HOH A . C 3 HOH 54 354 132 HOH HOH A . C 3 HOH 55 355 112 HOH HOH A . C 3 HOH 56 356 10 HOH HOH A . C 3 HOH 57 357 82 HOH HOH A . C 3 HOH 58 358 2 HOH HOH A . C 3 HOH 59 359 249 HOH HOH A . C 3 HOH 60 360 9 HOH HOH A . C 3 HOH 61 361 7 HOH HOH A . C 3 HOH 62 362 99 HOH HOH A . C 3 HOH 63 363 37 HOH HOH A . C 3 HOH 64 364 242 HOH HOH A . C 3 HOH 65 365 243 HOH HOH A . C 3 HOH 66 366 62 HOH HOH A . C 3 HOH 67 367 202 HOH HOH A . C 3 HOH 68 368 78 HOH HOH A . C 3 HOH 69 369 227 HOH HOH A . C 3 HOH 70 370 129 HOH HOH A . C 3 HOH 71 371 20 HOH HOH A . C 3 HOH 72 372 221 HOH HOH A . C 3 HOH 73 373 145 HOH HOH A . C 3 HOH 74 374 31 HOH HOH A . C 3 HOH 75 375 41 HOH HOH A . C 3 HOH 76 376 212 HOH HOH A . C 3 HOH 77 377 125 HOH HOH A . C 3 HOH 78 378 95 HOH HOH A . C 3 HOH 79 379 138 HOH HOH A . C 3 HOH 80 380 206 HOH HOH A . C 3 HOH 81 381 94 HOH HOH A . C 3 HOH 82 382 108 HOH HOH A . C 3 HOH 83 383 14 HOH HOH A . C 3 HOH 84 384 232 HOH HOH A . C 3 HOH 85 385 29 HOH HOH A . C 3 HOH 86 386 3 HOH HOH A . C 3 HOH 87 387 101 HOH HOH A . C 3 HOH 88 388 45 HOH HOH A . C 3 HOH 89 389 167 HOH HOH A . C 3 HOH 90 390 36 HOH HOH A . C 3 HOH 91 391 208 HOH HOH A . C 3 HOH 92 392 85 HOH HOH A . C 3 HOH 93 393 26 HOH HOH A . C 3 HOH 94 394 139 HOH HOH A . C 3 HOH 95 395 226 HOH HOH A . C 3 HOH 96 396 30 HOH HOH A . C 3 HOH 97 397 207 HOH HOH A . C 3 HOH 98 398 8 HOH HOH A . C 3 HOH 99 399 107 HOH HOH A . C 3 HOH 100 400 18 HOH HOH A . C 3 HOH 101 401 136 HOH HOH A . C 3 HOH 102 402 25 HOH HOH A . C 3 HOH 103 403 22 HOH HOH A . C 3 HOH 104 404 58 HOH HOH A . C 3 HOH 105 405 16 HOH HOH A . C 3 HOH 106 406 65 HOH HOH A . C 3 HOH 107 407 152 HOH HOH A . C 3 HOH 108 408 146 HOH HOH A . C 3 HOH 109 409 98 HOH HOH A . C 3 HOH 110 410 170 HOH HOH A . C 3 HOH 111 411 234 HOH HOH A . C 3 HOH 112 412 23 HOH HOH A . C 3 HOH 113 413 4 HOH HOH A . C 3 HOH 114 414 105 HOH HOH A . C 3 HOH 115 415 66 HOH HOH A . C 3 HOH 116 416 91 HOH HOH A . C 3 HOH 117 417 64 HOH HOH A . C 3 HOH 118 418 233 HOH HOH A . C 3 HOH 119 419 27 HOH HOH A . C 3 HOH 120 420 15 HOH HOH A . C 3 HOH 121 421 24 HOH HOH A . C 3 HOH 122 422 211 HOH HOH A . C 3 HOH 123 423 236 HOH HOH A . C 3 HOH 124 424 19 HOH HOH A . C 3 HOH 125 425 97 HOH HOH A . C 3 HOH 126 426 131 HOH HOH A . C 3 HOH 127 427 151 HOH HOH A . C 3 HOH 128 428 52 HOH HOH A . C 3 HOH 129 429 70 HOH HOH A . C 3 HOH 130 430 11 HOH HOH A . C 3 HOH 131 431 121 HOH HOH A . C 3 HOH 132 432 209 HOH HOH A . C 3 HOH 133 433 237 HOH HOH A . C 3 HOH 134 434 102 HOH HOH A . C 3 HOH 135 435 21 HOH HOH A . C 3 HOH 136 436 59 HOH HOH A . C 3 HOH 137 437 57 HOH HOH A . C 3 HOH 138 438 123 HOH HOH A . C 3 HOH 139 439 67 HOH HOH A . C 3 HOH 140 440 153 HOH HOH A . C 3 HOH 141 441 87 HOH HOH A . C 3 HOH 142 442 215 HOH HOH A . C 3 HOH 143 443 68 HOH HOH A . C 3 HOH 144 444 5 HOH HOH A . C 3 HOH 145 445 251 HOH HOH A . C 3 HOH 146 446 199 HOH HOH A . C 3 HOH 147 447 147 HOH HOH A . C 3 HOH 148 448 53 HOH HOH A . C 3 HOH 149 449 238 HOH HOH A . C 3 HOH 150 450 96 HOH HOH A . C 3 HOH 151 451 201 HOH HOH A . C 3 HOH 152 452 175 HOH HOH A . C 3 HOH 153 453 213 HOH HOH A . C 3 HOH 154 454 79 HOH HOH A . C 3 HOH 155 455 179 HOH HOH A . C 3 HOH 156 456 86 HOH HOH A . C 3 HOH 157 457 116 HOH HOH A . C 3 HOH 158 458 230 HOH HOH A . C 3 HOH 159 459 60 HOH HOH A . C 3 HOH 160 460 189 HOH HOH A . C 3 HOH 161 461 100 HOH HOH A . C 3 HOH 162 462 56 HOH HOH A . C 3 HOH 163 463 137 HOH HOH A . C 3 HOH 164 464 143 HOH HOH A . C 3 HOH 165 465 245 HOH HOH A . C 3 HOH 166 466 103 HOH HOH A . C 3 HOH 167 467 43 HOH HOH A . C 3 HOH 168 468 168 HOH HOH A . C 3 HOH 169 469 6 HOH HOH A . C 3 HOH 170 470 61 HOH HOH A . C 3 HOH 171 471 32 HOH HOH A . C 3 HOH 172 472 247 HOH HOH A . C 3 HOH 173 473 205 HOH HOH A . C 3 HOH 174 474 90 HOH HOH A . C 3 HOH 175 475 244 HOH HOH A . C 3 HOH 176 476 225 HOH HOH A . C 3 HOH 177 477 248 HOH HOH A . C 3 HOH 178 478 49 HOH HOH A . C 3 HOH 179 479 250 HOH HOH A . C 3 HOH 180 480 169 HOH HOH A . C 3 HOH 181 481 17 HOH HOH A . C 3 HOH 182 482 128 HOH HOH A . C 3 HOH 183 483 104 HOH HOH A . C 3 HOH 184 484 83 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 45 A MSE 44 ? MET 'modified residue' 2 A MSE 125 A MSE 124 ? MET 'modified residue' 3 A MSE 144 A MSE 143 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 405 ? C HOH . 2 1 A HOH 469 ? C HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 48.9656 _pdbx_refine_tls.origin_y 31.7331 _pdbx_refine_tls.origin_z 37.2900 _pdbx_refine_tls.T[1][1] 0.1065 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0022 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0027 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.1117 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0118 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.1272 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.2142 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.3131 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.1510 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.8790 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.0082 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.4810 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0176 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0600 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0239 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0598 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0177 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0510 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0366 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.1058 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0318 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 174 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? A 301 ? ? ? A 484 ? ? all 3 'X-RAY DIFFRACTION' 1 ? ? A 201 ? ? ? A 201 ? ? all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _pdbx_entry_details.entry_id 7Y56 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 39 ? ? 51.52 -137.36 2 1 TYR A 141 ? ? -132.33 -59.05 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 484 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.86 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A HIS 175 ? A HIS 176 3 1 Y 1 A ALA 176 ? A ALA 177 # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 GOL ? ? GOL ? ? 'SUBJECT OF INVESTIGATION' ? 2 MSE ? ? MSE ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #