HEADER CELL ADHESION 24-JUN-22 7Y8I TITLE CRYSTAL STRUCTURE OF SDSCAM FNIII3 DOMAIN, ISOFORM ALPHA7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSCAM; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHELICERATA; SOURCE 3 ORGANISM_TAXID: 6843; SOURCE 4 GENE: DSCAM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL SURFACE RECEPTOR, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHEN,Y.YU,J.CHENG REVDAT 2 29-NOV-23 7Y8I 1 REMARK REVDAT 1 24-MAY-23 7Y8I 0 JRNL AUTH J.CHENG,Y.YU,X.WANG,X.ZHENG,T.LIU,D.HU,Y.JIN,Y.LAI,T.M.FU, JRNL AUTH 2 Q.CHEN JRNL TITL STRUCTURAL BASIS FOR THE SELF-RECOGNITION OF SDSCAM IN JRNL TITL 2 CHELICERATA. JRNL REF NAT COMMUN V. 14 2522 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37130844 JRNL DOI 10.1038/S41467-023-38205-1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 46459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.960 REMARK 3 FREE R VALUE TEST SET COUNT : 911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7700 - 3.6300 1.00 7358 170 0.1912 0.2177 REMARK 3 2 3.6300 - 2.8800 1.00 7138 129 0.1887 0.2231 REMARK 3 3 2.8800 - 2.5200 1.00 7110 122 0.2051 0.2187 REMARK 3 4 2.5200 - 2.2900 1.00 7044 152 0.2045 0.2538 REMARK 3 5 2.2900 - 2.1200 0.97 6844 143 0.2061 0.2546 REMARK 3 6 2.1200 - 2.0000 0.81 5695 112 0.2051 0.2219 REMARK 3 7 2.0000 - 1.9000 0.62 4359 83 0.2214 0.2646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.203 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.469 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4458 REMARK 3 ANGLE : 0.862 6039 REMARK 3 CHIRALITY : 0.053 640 REMARK 3 PLANARITY : 0.005 769 REMARK 3 DIHEDRAL : 13.528 3144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Y8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300030357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VA9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM DIHYDROGEN PHOSPHATE PH REMARK 280 6.5, 18% (W/V) PEG 8000, 3% ISOPROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.55650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.11900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.88800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.11900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.55650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.88800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 70 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 492 REMARK 465 ALA A 493 REMARK 465 SER A 494 REMARK 465 ASN A 516 REMARK 465 SER A 517 REMARK 465 GLN A 518 REMARK 465 ALA A 519 REMARK 465 VAL A 520 REMARK 465 PRO A 521 REMARK 465 ALA A 522 REMARK 465 SER A 523 REMARK 465 THR A 524 REMARK 465 ILE A 525 REMARK 465 LYS A 526 REMARK 465 GLU A 588 REMARK 465 GLY B 492 REMARK 465 ALA B 493 REMARK 465 SER B 517 REMARK 465 GLN B 518 REMARK 465 ALA B 519 REMARK 465 VAL B 520 REMARK 465 PRO B 521 REMARK 465 ALA B 522 REMARK 465 SER B 523 REMARK 465 THR B 524 REMARK 465 ILE B 525 REMARK 465 LYS B 526 REMARK 465 GLY C 492 REMARK 465 ASN C 516 REMARK 465 SER C 517 REMARK 465 GLN C 518 REMARK 465 ALA C 519 REMARK 465 VAL C 520 REMARK 465 PRO C 521 REMARK 465 ALA C 522 REMARK 465 SER C 523 REMARK 465 GLU C 588 REMARK 465 GLY D 492 REMARK 465 SER D 517 REMARK 465 GLN D 518 REMARK 465 ALA D 519 REMARK 465 GLN F 518 REMARK 465 ALA F 519 REMARK 465 VAL F 520 REMARK 465 PRO F 521 REMARK 465 ALA F 522 REMARK 465 SER F 523 REMARK 465 THR F 524 REMARK 465 ILE F 525 REMARK 465 LYS F 526 REMARK 465 GLU F 588 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 571 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 571 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 571 CZ NH1 NH2 REMARK 470 ARG D 571 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS E 587 O HOH E 703 1.44 REMARK 500 H GLU E 515 O HOH E 701 1.47 REMARK 500 HD22 ASN B 513 O HOH B 803 1.58 REMARK 500 O HOH D 705 O HOH D 726 1.92 REMARK 500 O HOH C 706 O HOH C 731 1.92 REMARK 500 O HOH D 738 O HOH D 745 1.96 REMARK 500 O HOH B 836 O HOH B 842 2.04 REMARK 500 O HOH B 832 O HOH C 719 2.06 REMARK 500 O ASN D 546 O HOH D 701 2.09 REMARK 500 O3 PO4 B 703 O HOH B 801 2.11 REMARK 500 O HOH F 761 O HOH F 762 2.11 REMARK 500 O PRO A 498 O HOH A 701 2.11 REMARK 500 OE2 GLU E 515 O HOH E 701 2.14 REMARK 500 N GLU E 515 O HOH E 701 2.16 REMARK 500 O PRO B 495 O HOH B 802 2.16 REMARK 500 O HOH A 735 O HOH A 751 2.17 REMARK 500 O HOH D 738 O HOH D 743 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 731 O HOH D 746 4555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 515 CD GLU C 515 OE2 -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 508 10.70 -144.93 REMARK 500 SER B 508 11.51 -144.54 REMARK 500 SER C 508 14.25 -145.91 REMARK 500 TRP E 514 17.81 -141.90 REMARK 500 ASN E 536 -8.79 75.83 REMARK 500 ASP F 535 -129.13 49.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 769 DISTANCE = 6.48 ANGSTROMS DBREF1 7Y8I A 492 588 UNP A0A159W468_MESMA DBREF2 7Y8I A A0A159W468 492 588 DBREF1 7Y8I B 492 588 UNP A0A159W468_MESMA DBREF2 7Y8I B A0A159W468 492 588 DBREF1 7Y8I C 492 588 UNP A0A159W468_MESMA DBREF2 7Y8I C A0A159W468 492 588 DBREF1 7Y8I D 492 588 UNP A0A159W468_MESMA DBREF2 7Y8I D A0A159W468 492 588 DBREF1 7Y8I E 492 588 UNP A0A159W468_MESMA DBREF2 7Y8I E A0A159W468 492 588 DBREF1 7Y8I F 492 588 UNP A0A159W468_MESMA DBREF2 7Y8I F A0A159W468 492 588 SEQADV 7Y8I ALA A 493 UNP A0A159W46 ASP 493 CONFLICT SEQADV 7Y8I SER A 494 UNP A0A159W46 PRO 494 CONFLICT SEQADV 7Y8I ALA B 493 UNP A0A159W46 ASP 493 CONFLICT SEQADV 7Y8I SER B 494 UNP A0A159W46 PRO 494 CONFLICT SEQADV 7Y8I ALA C 493 UNP A0A159W46 ASP 493 CONFLICT SEQADV 7Y8I SER C 494 UNP A0A159W46 PRO 494 CONFLICT SEQADV 7Y8I ALA D 493 UNP A0A159W46 ASP 493 CONFLICT SEQADV 7Y8I SER D 494 UNP A0A159W46 PRO 494 CONFLICT SEQADV 7Y8I ALA E 493 UNP A0A159W46 ASP 493 CONFLICT SEQADV 7Y8I SER E 494 UNP A0A159W46 PRO 494 CONFLICT SEQADV 7Y8I ALA F 493 UNP A0A159W46 ASP 493 CONFLICT SEQADV 7Y8I SER F 494 UNP A0A159W46 PRO 494 CONFLICT SEQRES 1 A 97 GLY ALA SER PRO PRO LEU PRO SER ILE SER ILE SER HIS SEQRES 2 A 97 VAL THR SER SER SER VAL GLN LEU ASN TRP GLU ASN SER SEQRES 3 A 97 GLN ALA VAL PRO ALA SER THR ILE LYS GLN TYR LEU LEU SEQRES 4 A 97 GLU PHE ARG GLY ASP ASN LYS ASP TRP ILE LYS LEU HIS SEQRES 5 A 97 ILE PRO ASN ASN ARG LYS SER PHE VAL LEU ASN GLY LEU SEQRES 6 A 97 ASP SER SER ARG ARG TYR GLN LEU ARG LEU ALA ALA TYR SEQRES 7 A 97 ASN ARG TYR GLY ARG GLY ASP PHE ALA VAL ILE GLY PHE SEQRES 8 A 97 THR THR ALA HIS LYS GLU SEQRES 1 B 97 GLY ALA SER PRO PRO LEU PRO SER ILE SER ILE SER HIS SEQRES 2 B 97 VAL THR SER SER SER VAL GLN LEU ASN TRP GLU ASN SER SEQRES 3 B 97 GLN ALA VAL PRO ALA SER THR ILE LYS GLN TYR LEU LEU SEQRES 4 B 97 GLU PHE ARG GLY ASP ASN LYS ASP TRP ILE LYS LEU HIS SEQRES 5 B 97 ILE PRO ASN ASN ARG LYS SER PHE VAL LEU ASN GLY LEU SEQRES 6 B 97 ASP SER SER ARG ARG TYR GLN LEU ARG LEU ALA ALA TYR SEQRES 7 B 97 ASN ARG TYR GLY ARG GLY ASP PHE ALA VAL ILE GLY PHE SEQRES 8 B 97 THR THR ALA HIS LYS GLU SEQRES 1 C 97 GLY ALA SER PRO PRO LEU PRO SER ILE SER ILE SER HIS SEQRES 2 C 97 VAL THR SER SER SER VAL GLN LEU ASN TRP GLU ASN SER SEQRES 3 C 97 GLN ALA VAL PRO ALA SER THR ILE LYS GLN TYR LEU LEU SEQRES 4 C 97 GLU PHE ARG GLY ASP ASN LYS ASP TRP ILE LYS LEU HIS SEQRES 5 C 97 ILE PRO ASN ASN ARG LYS SER PHE VAL LEU ASN GLY LEU SEQRES 6 C 97 ASP SER SER ARG ARG TYR GLN LEU ARG LEU ALA ALA TYR SEQRES 7 C 97 ASN ARG TYR GLY ARG GLY ASP PHE ALA VAL ILE GLY PHE SEQRES 8 C 97 THR THR ALA HIS LYS GLU SEQRES 1 D 97 GLY ALA SER PRO PRO LEU PRO SER ILE SER ILE SER HIS SEQRES 2 D 97 VAL THR SER SER SER VAL GLN LEU ASN TRP GLU ASN SER SEQRES 3 D 97 GLN ALA VAL PRO ALA SER THR ILE LYS GLN TYR LEU LEU SEQRES 4 D 97 GLU PHE ARG GLY ASP ASN LYS ASP TRP ILE LYS LEU HIS SEQRES 5 D 97 ILE PRO ASN ASN ARG LYS SER PHE VAL LEU ASN GLY LEU SEQRES 6 D 97 ASP SER SER ARG ARG TYR GLN LEU ARG LEU ALA ALA TYR SEQRES 7 D 97 ASN ARG TYR GLY ARG GLY ASP PHE ALA VAL ILE GLY PHE SEQRES 8 D 97 THR THR ALA HIS LYS GLU SEQRES 1 E 97 GLY ALA SER PRO PRO LEU PRO SER ILE SER ILE SER HIS SEQRES 2 E 97 VAL THR SER SER SER VAL GLN LEU ASN TRP GLU ASN SER SEQRES 3 E 97 GLN ALA VAL PRO ALA SER THR ILE LYS GLN TYR LEU LEU SEQRES 4 E 97 GLU PHE ARG GLY ASP ASN LYS ASP TRP ILE LYS LEU HIS SEQRES 5 E 97 ILE PRO ASN ASN ARG LYS SER PHE VAL LEU ASN GLY LEU SEQRES 6 E 97 ASP SER SER ARG ARG TYR GLN LEU ARG LEU ALA ALA TYR SEQRES 7 E 97 ASN ARG TYR GLY ARG GLY ASP PHE ALA VAL ILE GLY PHE SEQRES 8 E 97 THR THR ALA HIS LYS GLU SEQRES 1 F 97 GLY ALA SER PRO PRO LEU PRO SER ILE SER ILE SER HIS SEQRES 2 F 97 VAL THR SER SER SER VAL GLN LEU ASN TRP GLU ASN SER SEQRES 3 F 97 GLN ALA VAL PRO ALA SER THR ILE LYS GLN TYR LEU LEU SEQRES 4 F 97 GLU PHE ARG GLY ASP ASN LYS ASP TRP ILE LYS LEU HIS SEQRES 5 F 97 ILE PRO ASN ASN ARG LYS SER PHE VAL LEU ASN GLY LEU SEQRES 6 F 97 ASP SER SER ARG ARG TYR GLN LEU ARG LEU ALA ALA TYR SEQRES 7 F 97 ASN ARG TYR GLY ARG GLY ASP PHE ALA VAL ILE GLY PHE SEQRES 8 F 97 THR THR ALA HIS LYS GLU HET PO4 A 601 5 HET IPA B 701 12 HET PO4 B 702 5 HET PO4 B 703 5 HET IPA C 601 12 HET PO4 D 601 5 HET PO4 E 601 5 HET PO4 E 602 5 HET CL E 603 1 HET PEG F 601 17 HET PO4 F 602 5 HET PO4 F 603 5 HETNAM PO4 PHOSPHATE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN IPA 2-PROPANOL FORMUL 7 PO4 8(O4 P 3-) FORMUL 8 IPA 2(C3 H8 O) FORMUL 15 CL CL 1- FORMUL 16 PEG C4 H10 O3 FORMUL 19 HOH *337(H2 O) HELIX 1 AA1 PRO D 521 SER D 523 5 3 SHEET 1 AA1 7 SER A 550 LEU A 553 0 SHEET 2 AA1 7 VAL A 510 GLU A 515 -1 N LEU A 512 O PHE A 551 SHEET 3 AA1 7 SER A 499 SER A 503 -1 N SER A 501 O ASN A 513 SHEET 4 AA1 7 ALA C 578 THR C 583 1 O GLY C 581 N ILE A 502 SHEET 5 AA1 7 ARG C 561 ASN C 570 -1 N LEU C 566 O ALA C 578 SHEET 6 AA1 7 GLN C 527 GLY C 534 -1 N LEU C 529 O ALA C 567 SHEET 7 AA1 7 ILE C 540 LYS C 541 -1 O ILE C 540 N PHE C 532 SHEET 1 AA2 6 SER A 550 LEU A 553 0 SHEET 2 AA2 6 VAL A 510 GLU A 515 -1 N LEU A 512 O PHE A 551 SHEET 3 AA2 6 SER A 499 SER A 503 -1 N SER A 501 O ASN A 513 SHEET 4 AA2 6 ALA C 578 THR C 583 1 O GLY C 581 N ILE A 502 SHEET 5 AA2 6 ARG C 561 ASN C 570 -1 N LEU C 566 O ALA C 578 SHEET 6 AA2 6 GLY C 573 ARG C 574 -1 O GLY C 573 N ASN C 570 SHEET 1 AA3 4 ILE A 540 LEU A 542 0 SHEET 2 AA3 4 TYR A 528 GLY A 534 -1 N LEU A 530 O LEU A 542 SHEET 3 AA3 4 ARG A 561 ASN A 570 -1 O ARG A 565 N GLU A 531 SHEET 4 AA3 4 GLY A 573 ARG A 574 -1 O GLY A 573 N ASN A 570 SHEET 1 AA4 7 ILE A 540 LEU A 542 0 SHEET 2 AA4 7 TYR A 528 GLY A 534 -1 N LEU A 530 O LEU A 542 SHEET 3 AA4 7 ARG A 561 ASN A 570 -1 O ARG A 565 N GLU A 531 SHEET 4 AA4 7 ALA A 578 THR A 583 -1 O PHE A 582 N TYR A 562 SHEET 5 AA4 7 SER C 501 SER C 503 1 O ILE C 502 N GLY A 581 SHEET 6 AA4 7 VAL C 510 ASN C 513 -1 O ASN C 513 N SER C 501 SHEET 7 AA4 7 SER C 550 LEU C 553 -1 O LEU C 553 N VAL C 510 SHEET 1 AA5 7 SER B 550 LEU B 553 0 SHEET 2 AA5 7 VAL B 510 GLU B 515 -1 N LEU B 512 O PHE B 551 SHEET 3 AA5 7 SER B 499 SER B 503 -1 N SER B 499 O GLU B 515 SHEET 4 AA5 7 ALA F 578 THR F 583 1 O THR F 583 N ILE B 502 SHEET 5 AA5 7 ARG F 561 ASN F 570 -1 N LEU F 566 O ALA F 578 SHEET 6 AA5 7 TYR F 528 GLY F 534 -1 N LEU F 529 O ALA F 567 SHEET 7 AA5 7 ILE F 540 LEU F 542 -1 O LEU F 542 N LEU F 530 SHEET 1 AA6 6 SER B 550 LEU B 553 0 SHEET 2 AA6 6 VAL B 510 GLU B 515 -1 N LEU B 512 O PHE B 551 SHEET 3 AA6 6 SER B 499 SER B 503 -1 N SER B 499 O GLU B 515 SHEET 4 AA6 6 ALA F 578 THR F 583 1 O THR F 583 N ILE B 502 SHEET 5 AA6 6 ARG F 561 ASN F 570 -1 N LEU F 566 O ALA F 578 SHEET 6 AA6 6 GLY F 573 ARG F 574 -1 O GLY F 573 N ASN F 570 SHEET 1 AA7 7 ILE B 540 LEU B 542 0 SHEET 2 AA7 7 TYR B 528 GLY B 534 -1 N LEU B 530 O LEU B 542 SHEET 3 AA7 7 ARG B 561 ALA B 568 -1 O ALA B 567 N LEU B 529 SHEET 4 AA7 7 ALA B 578 THR B 583 -1 O ALA B 578 N LEU B 566 SHEET 5 AA7 7 SER F 499 SER F 503 1 O ILE F 502 N GLY B 581 SHEET 6 AA7 7 VAL F 510 GLU F 515 -1 O ASN F 513 N SER F 501 SHEET 7 AA7 7 SER F 550 LEU F 553 -1 O PHE F 551 N LEU F 512 SHEET 1 AA8 3 SER D 499 SER D 503 0 SHEET 2 AA8 3 VAL D 510 GLU D 515 -1 O GLN D 511 N SER D 503 SHEET 3 AA8 3 SER D 550 LEU D 553 -1 O PHE D 551 N LEU D 512 SHEET 1 AA9 4 ILE D 540 LEU D 542 0 SHEET 2 AA9 4 ILE D 525 GLY D 534 -1 N LEU D 530 O LEU D 542 SHEET 3 AA9 4 ARG D 561 ASN D 570 -1 O TYR D 569 N GLN D 527 SHEET 4 AA9 4 GLY D 573 ARG D 574 -1 O GLY D 573 N ASN D 570 SHEET 1 AB1 4 ILE D 540 LEU D 542 0 SHEET 2 AB1 4 ILE D 525 GLY D 534 -1 N LEU D 530 O LEU D 542 SHEET 3 AB1 4 ARG D 561 ASN D 570 -1 O TYR D 569 N GLN D 527 SHEET 4 AB1 4 ALA D 578 THR D 583 -1 O PHE D 582 N TYR D 562 SHEET 1 AB2 3 SER E 501 SER E 503 0 SHEET 2 AB2 3 VAL E 510 ASN E 513 -1 O ASN E 513 N SER E 501 SHEET 3 AB2 3 SER E 550 LEU E 553 -1 O PHE E 551 N LEU E 512 SHEET 1 AB3 4 ILE E 540 LEU E 542 0 SHEET 2 AB3 4 GLN E 527 GLY E 534 -1 N PHE E 532 O ILE E 540 SHEET 3 AB3 4 ARG E 561 ASN E 570 -1 O ALA E 567 N LEU E 529 SHEET 4 AB3 4 GLY E 573 ARG E 574 -1 O GLY E 573 N ASN E 570 SHEET 1 AB4 4 ILE E 540 LEU E 542 0 SHEET 2 AB4 4 GLN E 527 GLY E 534 -1 N PHE E 532 O ILE E 540 SHEET 3 AB4 4 ARG E 561 ASN E 570 -1 O ALA E 567 N LEU E 529 SHEET 4 AB4 4 ALA E 578 THR E 583 -1 O ILE E 580 N LEU E 564 CISPEP 1 SER F 494 PRO F 495 0 -4.39 CRYST1 69.113 85.776 106.238 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014469 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009413 0.00000