HEADER LIGASE 27-JUN-22 7YA7 TITLE THE CRYSTAL STRUCTURE OF IPAH1.4 LRR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING-TYPE E3 UBIQUITIN TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LRR DOMAIN(SUBSTRATE RECOGNISION DOMAIN); COMPND 5 SYNONYM: INVASION PLASMID ANTIGEN H1.4; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 5A; SOURCE 3 ORGANISM_TAXID: 1086030; SOURCE 4 STRAIN: M90T; SOURCE 5 GENE: IPAH1.4, S0283, PWR501_0283; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHIGELLA FLEXNERI, EFFECTOR, IPAH1.4, UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HIRAGI,A.NISHIDE,K.TAKAGI,K.IWAI,M.KIM,T.MIZUSHIMA REVDAT 4 29-NOV-23 7YA7 1 REMARK REVDAT 3 12-APR-23 7YA7 1 JRNL REVDAT 2 22-FEB-23 7YA7 1 REMARK REVDAT 1 08-FEB-23 7YA7 0 JRNL AUTH K.HIRAGI,A.NISHIDE,K.TAKAGI,K.IWAI,M.KIM,T.MIZUSHIMA JRNL TITL STRUCTURAL INSIGHT INTO THE RECOGNITION OF THE LINEAR JRNL TITL 2 UBIQUITIN ASSEMBLY COMPLEX BY SHIGELLA E3 LIGASE JRNL TITL 3 IPAH1.4/2.5. JRNL REF J.BIOCHEM. V. 173 317 2023 JRNL REFN ISSN 0021-924X JRNL PMID 36610722 JRNL DOI 10.1093/JB/MVAC109 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 80738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5656 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 299 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 529 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.133 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3705 ; 0.029 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3663 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5054 ; 2.502 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8452 ; 1.291 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 6.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;42.476 ;25.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;12.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4149 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 791 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 1.815 ; 1.411 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1812 ; 1.815 ; 1.411 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2261 ; 2.388 ; 2.120 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2262 ; 2.387 ; 2.120 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1892 ; 3.679 ; 1.852 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1893 ; 3.678 ; 1.852 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2794 ; 5.331 ; 2.623 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4530 ; 7.547 ;14.015 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4240 ; 7.201 ;12.955 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7YA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300030475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5B0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE (PH 8.0), 1.2 M NACL., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.01950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 PRO A 40 REMARK 465 LEU A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 SER A 278 REMARK 465 MET A 279 REMARK 465 GLY A 280 REMARK 465 ASN A 281 REMARK 465 GLY B 39 REMARK 465 PRO B 40 REMARK 465 LEU B 41 REMARK 465 GLY B 42 REMARK 465 SER B 43 REMARK 465 CYS B 44 REMARK 465 ASN B 45 REMARK 465 GLU B 46 REMARK 465 LEU B 261 REMARK 465 GLN B 262 REMARK 465 GLN B 263 REMARK 465 ILE B 264 REMARK 465 THR B 265 REMARK 465 THR B 266 REMARK 465 GLY B 267 REMARK 465 PRO B 268 REMARK 465 ASP B 269 REMARK 465 TYR B 270 REMARK 465 PHE B 277 REMARK 465 SER B 278 REMARK 465 MET B 279 REMARK 465 GLY B 280 REMARK 465 ASN B 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 409 O HOH A 504 1.90 REMARK 500 O HOH A 531 O HOH A 567 1.91 REMARK 500 O HOH B 430 O HOH B 471 2.01 REMARK 500 O HOH A 418 O HOH B 504 2.05 REMARK 500 O HOH A 304 O HOH A 406 2.06 REMARK 500 O HOH A 303 O HOH A 526 2.06 REMARK 500 O HOH A 313 O HOH A 318 2.06 REMARK 500 O HOH B 353 O HOH B 481 2.07 REMARK 500 O HOH A 496 O HOH A 576 2.07 REMARK 500 O HOH B 335 O HOH B 407 2.09 REMARK 500 N CYS A 44 O HOH A 301 2.11 REMARK 500 O HOH B 392 O HOH B 487 2.12 REMARK 500 O HOH B 481 O HOH B 506 2.15 REMARK 500 O HOH B 483 O HOH B 484 2.17 REMARK 500 O HOH B 322 O HOH B 489 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 458 O HOH B 481 1455 2.09 REMARK 500 O HOH A 315 O HOH A 540 1545 2.10 REMARK 500 O HOH A 305 O HOH A 401 2656 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 186 CB SER A 186 OG -0.109 REMARK 500 GLU A 215 CD GLU A 215 OE2 0.102 REMARK 500 ASN A 221 CB ASN A 221 CG 0.151 REMARK 500 GLU B 80 CD GLU B 80 OE2 0.102 REMARK 500 GLU B 215 CD GLU B 215 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU A 80 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 PHE A 155 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 198 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 MET A 220 CG - SD - CE ANGL. DEV. = -25.2 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 TRP B 55 CD1 - CG - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 164 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 222 CG - CD - NE ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG B 222 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -161.06 -118.54 REMARK 500 ASN A 128 -158.53 -124.75 REMARK 500 ALA A 145 36.21 -144.69 REMARK 500 ASN A 168 -160.25 -117.42 REMARK 500 ASN A 188 -154.36 -110.29 REMARK 500 ASN A 228 -166.53 -125.02 REMARK 500 GLN B 64 59.71 -106.27 REMARK 500 ASN B 108 -155.14 -119.65 REMARK 500 ASN B 128 -150.02 -123.97 REMARK 500 ASN B 168 -165.48 -119.76 REMARK 500 SER B 186 150.08 -46.84 REMARK 500 ASN B 188 -156.08 -114.93 REMARK 500 ASN B 208 -162.50 -121.83 REMARK 500 ASN B 228 -163.61 -112.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 537 DISTANCE = 5.92 ANGSTROMS DBREF 7YA7 A 43 281 UNP Q9AFJ5 Q9AFJ5_SHIFM 43 281 DBREF 7YA7 B 43 281 UNP Q9AFJ5 Q9AFJ5_SHIFM 43 281 SEQADV 7YA7 GLY A 39 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 PRO A 40 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 LEU A 41 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 GLY A 42 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 GLY B 39 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 PRO B 40 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 LEU B 41 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7YA7 GLY B 42 UNP Q9AFJ5 EXPRESSION TAG SEQRES 1 A 243 GLY PRO LEU GLY SER CYS ASN GLU PHE TYR LEU LYS THR SEQRES 2 A 243 TRP SER GLU TRP GLU LYS ASN GLY THR PRO GLY GLU GLN SEQRES 3 A 243 ARG ASN ILE ALA PHE ASN ARG LEU LYS ILE CYS LEU GLN SEQRES 4 A 243 ASN GLN GLU ALA GLU LEU ASN LEU SER GLU LEU ASP LEU SEQRES 5 A 243 LYS THR LEU PRO ASP LEU PRO PRO GLN ILE THR THR LEU SEQRES 6 A 243 GLU ILE ARG LYS ASN LEU LEU THR HIS LEU PRO ASP LEU SEQRES 7 A 243 PRO PRO MET LEU LYS VAL ILE HIS ALA GLN PHE ASN GLN SEQRES 8 A 243 LEU GLU SER LEU PRO ALA LEU PRO GLU THR LEU GLU GLU SEQRES 9 A 243 LEU ASN ALA GLY ASP ASN LYS ILE LYS GLU LEU PRO PHE SEQRES 10 A 243 LEU PRO GLU ASN LEU THR HIS LEU ARG VAL HIS ASN ASN SEQRES 11 A 243 ARG LEU HIS ILE LEU PRO LEU LEU PRO PRO GLU LEU LYS SEQRES 12 A 243 LEU LEU VAL VAL SER GLY ASN ARG LEU ASP SER ILE PRO SEQRES 13 A 243 PRO PHE PRO ASP LYS LEU GLU GLY LEU ALA LEU ALA ASN SEQRES 14 A 243 ASN PHE ILE GLU GLN LEU PRO GLU LEU PRO PHE SER MET SEQRES 15 A 243 ASN ARG ALA VAL LEU MET ASN ASN ASN LEU THR THR LEU SEQRES 16 A 243 PRO GLU SER VAL LEU ARG LEU ALA GLN ASN ALA PHE VAL SEQRES 17 A 243 ASN VAL ALA GLY ASN PRO LEU SER GLY HIS THR MET ARG SEQRES 18 A 243 THR LEU GLN GLN ILE THR THR GLY PRO ASP TYR SER GLY SEQRES 19 A 243 PRO ARG ILE PHE PHE SER MET GLY ASN SEQRES 1 B 243 GLY PRO LEU GLY SER CYS ASN GLU PHE TYR LEU LYS THR SEQRES 2 B 243 TRP SER GLU TRP GLU LYS ASN GLY THR PRO GLY GLU GLN SEQRES 3 B 243 ARG ASN ILE ALA PHE ASN ARG LEU LYS ILE CYS LEU GLN SEQRES 4 B 243 ASN GLN GLU ALA GLU LEU ASN LEU SER GLU LEU ASP LEU SEQRES 5 B 243 LYS THR LEU PRO ASP LEU PRO PRO GLN ILE THR THR LEU SEQRES 6 B 243 GLU ILE ARG LYS ASN LEU LEU THR HIS LEU PRO ASP LEU SEQRES 7 B 243 PRO PRO MET LEU LYS VAL ILE HIS ALA GLN PHE ASN GLN SEQRES 8 B 243 LEU GLU SER LEU PRO ALA LEU PRO GLU THR LEU GLU GLU SEQRES 9 B 243 LEU ASN ALA GLY ASP ASN LYS ILE LYS GLU LEU PRO PHE SEQRES 10 B 243 LEU PRO GLU ASN LEU THR HIS LEU ARG VAL HIS ASN ASN SEQRES 11 B 243 ARG LEU HIS ILE LEU PRO LEU LEU PRO PRO GLU LEU LYS SEQRES 12 B 243 LEU LEU VAL VAL SER GLY ASN ARG LEU ASP SER ILE PRO SEQRES 13 B 243 PRO PHE PRO ASP LYS LEU GLU GLY LEU ALA LEU ALA ASN SEQRES 14 B 243 ASN PHE ILE GLU GLN LEU PRO GLU LEU PRO PHE SER MET SEQRES 15 B 243 ASN ARG ALA VAL LEU MET ASN ASN ASN LEU THR THR LEU SEQRES 16 B 243 PRO GLU SER VAL LEU ARG LEU ALA GLN ASN ALA PHE VAL SEQRES 17 B 243 ASN VAL ALA GLY ASN PRO LEU SER GLY HIS THR MET ARG SEQRES 18 B 243 THR LEU GLN GLN ILE THR THR GLY PRO ASP TYR SER GLY SEQRES 19 B 243 PRO ARG ILE PHE PHE SER MET GLY ASN FORMUL 3 HOH *529(H2 O) HELIX 1 AA1 CYS A 44 LYS A 57 1 14 HELIX 2 AA2 GLN A 64 ASN A 78 1 15 HELIX 3 AA3 PRO A 234 LEU A 240 5 7 HELIX 4 AA4 SER A 254 THR A 266 1 13 HELIX 5 AA5 TYR B 48 ASN B 58 1 11 HELIX 6 AA6 GLN B 64 GLN B 79 1 16 HELIX 7 AA7 PRO B 234 LEU B 240 5 7 HELIX 8 AA8 SER B 254 THR B 260 1 7 SHEET 1 AA110 GLU A 82 ASN A 84 0 SHEET 2 AA110 THR A 102 GLU A 104 1 O GLU A 104 N LEU A 83 SHEET 3 AA110 VAL A 122 HIS A 124 1 O HIS A 124 N LEU A 103 SHEET 4 AA110 GLU A 142 ASN A 144 1 O ASN A 144 N ILE A 123 SHEET 5 AA110 HIS A 162 ARG A 164 1 O ARG A 164 N LEU A 143 SHEET 6 AA110 LEU A 182 VAL A 184 1 O VAL A 184 N LEU A 163 SHEET 7 AA110 GLY A 202 ALA A 204 1 O ALA A 204 N LEU A 183 SHEET 8 AA110 ARG A 222 VAL A 224 1 O VAL A 224 N LEU A 203 SHEET 9 AA110 PHE A 245 ASN A 247 1 O PHE A 245 N ALA A 223 SHEET 10 AA110 ARG A 274 PHE A 276 1 O PHE A 276 N VAL A 246 SHEET 1 AA210 GLU B 82 ASN B 84 0 SHEET 2 AA210 THR B 102 GLU B 104 1 O GLU B 104 N LEU B 83 SHEET 3 AA210 VAL B 122 HIS B 124 1 O HIS B 124 N LEU B 103 SHEET 4 AA210 GLU B 142 ASN B 144 1 O ASN B 144 N ILE B 123 SHEET 5 AA210 HIS B 162 ARG B 164 1 O ARG B 164 N LEU B 143 SHEET 6 AA210 LEU B 182 VAL B 184 1 O VAL B 184 N LEU B 163 SHEET 7 AA210 GLY B 202 ALA B 204 1 O ALA B 204 N LEU B 183 SHEET 8 AA210 ARG B 222 VAL B 224 1 O VAL B 224 N LEU B 203 SHEET 9 AA210 PHE B 245 ASN B 247 1 O ASN B 247 N ALA B 223 SHEET 10 AA210 ARG B 274 PHE B 276 1 O PHE B 276 N VAL B 246 CRYST1 33.467 68.039 100.260 90.00 100.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029880 0.000000 0.005658 0.00000 SCALE2 0.000000 0.014697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010151 0.00000