HEADER HYDROLASE 06-JUL-22 7YEO TITLE CRYSTAL STRUCTURE OF CYSTATHIONINE GAMMA-SYNTHASE-LIKE PROTEIN TITLE 2 C23A1.14C COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED TRANS-SULFURATION ENZYME C23A1.14C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SPAC23A1.14C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTATHIONINE GAMMA-SYNTHASE-LIKE PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.ZHANG REVDAT 2 29-NOV-23 7YEO 1 REMARK REVDAT 1 11-JAN-23 7YEO 0 JRNL AUTH S.J.ZHANG JRNL TITL CRYSTAL STRUCTURE OF CYSTATHIONINE GAMMA-SYNTHASE-LIKE JRNL TITL 2 PROTEIN C23A1.14C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.1_3865 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 87181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1500 - 5.2700 1.00 2852 143 0.1530 0.1613 REMARK 3 2 5.2700 - 4.1900 0.99 2804 145 0.1279 0.1340 REMARK 3 3 4.1900 - 3.6600 0.99 2819 137 0.1357 0.1435 REMARK 3 4 3.6600 - 3.3300 0.99 2781 146 0.1425 0.1706 REMARK 3 5 3.3300 - 3.0900 0.99 2764 156 0.1612 0.1918 REMARK 3 6 3.0900 - 2.9100 0.99 2772 155 0.1607 0.1942 REMARK 3 7 2.9100 - 2.7600 0.99 2759 152 0.1681 0.2083 REMARK 3 8 2.7600 - 2.6400 0.99 2758 159 0.1639 0.1997 REMARK 3 9 2.6400 - 2.5400 0.99 2810 128 0.1632 0.1741 REMARK 3 10 2.5400 - 2.4500 0.99 2767 138 0.1663 0.1760 REMARK 3 11 2.4500 - 2.3700 0.99 2756 152 0.1632 0.1874 REMARK 3 12 2.3700 - 2.3100 0.99 2758 145 0.1661 0.1866 REMARK 3 13 2.3100 - 2.2500 0.99 2764 136 0.1699 0.1946 REMARK 3 14 2.2500 - 2.1900 0.99 2781 149 0.1692 0.1927 REMARK 3 15 2.1900 - 2.1400 0.99 2744 135 0.1676 0.2139 REMARK 3 16 2.1400 - 2.1000 0.99 2763 137 0.1713 0.2228 REMARK 3 17 2.1000 - 2.0500 0.99 2760 151 0.1749 0.2031 REMARK 3 18 2.0500 - 2.0200 0.99 2721 155 0.1824 0.2193 REMARK 3 19 2.0200 - 1.9800 0.99 2759 147 0.1817 0.2207 REMARK 3 20 1.9800 - 1.9500 0.99 2749 164 0.1866 0.2207 REMARK 3 21 1.9500 - 1.9100 0.99 2736 151 0.1839 0.2183 REMARK 3 22 1.9100 - 1.8900 0.98 2727 144 0.1818 0.2031 REMARK 3 23 1.8900 - 1.8600 0.98 2736 175 0.1921 0.2237 REMARK 3 24 1.8600 - 1.8300 0.99 2741 142 0.2081 0.2076 REMARK 3 25 1.8300 - 1.8100 0.98 2718 129 0.2080 0.2533 REMARK 3 26 1.8100 - 1.7800 0.98 2795 149 0.2299 0.2690 REMARK 3 27 1.7800 - 1.7600 0.98 2671 133 0.2207 0.2825 REMARK 3 28 1.7600 - 1.7400 0.98 2778 165 0.2344 0.2631 REMARK 3 29 1.7400 - 1.7200 0.98 2694 153 0.2320 0.2755 REMARK 3 30 1.7200 - 1.7000 0.98 2727 146 0.2313 0.2761 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.169 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6103 REMARK 3 ANGLE : 1.406 8325 REMARK 3 CHIRALITY : 0.091 970 REMARK 3 PLANARITY : 0.010 1062 REMARK 3 DIHEDRAL : 18.090 2187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07372 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89580 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3E6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG550, HEPES, MAGNESIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.69500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.69500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 PHE A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 ILE A 12 REMARK 465 THR A 56 REMARK 465 LYS A 57 REMARK 465 LEU A 58 REMARK 465 ALA A 59 REMARK 465 GLU A 60 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 ASP B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ILE B 12 REMARK 465 THR B 56 REMARK 465 LYS B 57 REMARK 465 LEU B 58 REMARK 465 ALA B 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 48 OD1 ASP A 50 2.10 REMARK 500 O HOH A 718 O HOH A 719 2.14 REMARK 500 OH TYR B 345 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 316 CD LYS B 316 CE -0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 GLU A 151 OE1 - CD - OE2 ANGL. DEV. = -20.6 DEGREES REMARK 500 GLU A 151 CG - CD - OE1 ANGL. DEV. = 26.2 DEGREES REMARK 500 GLU A 151 CG - CD - OE2 ANGL. DEV. = -19.6 DEGREES REMARK 500 LYS B 109 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU B 176 CB - CG - CD2 ANGL. DEV. = -17.4 DEGREES REMARK 500 GLU B 312 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 106.02 -55.63 REMARK 500 LEU A 137 119.10 -35.20 REMARK 500 ASP A 143 13.41 -141.16 REMARK 500 LYS A 145 -47.22 -131.54 REMARK 500 LYS A 212 -109.88 -88.84 REMARK 500 SER A 351 -178.93 77.31 REMARK 500 ASP A 366 111.15 -164.98 REMARK 500 GLU B 61 -40.35 -132.06 REMARK 500 PHE B 63 108.18 -48.00 REMARK 500 LEU B 137 123.97 -36.63 REMARK 500 ASP B 143 18.65 -144.55 REMARK 500 LYS B 145 -54.97 -126.91 REMARK 500 ALA B 191 83.06 -150.80 REMARK 500 LYS B 212 -107.82 -89.48 REMARK 500 SER B 351 -176.33 74.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 50 0.08 SIDE CHAIN REMARK 500 GLU A 151 0.11 SIDE CHAIN REMARK 500 GLU A 287 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 751 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 6.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD1 REMARK 620 2 HOH A 649 O 94.1 REMARK 620 3 HOH A 660 O 87.7 90.5 REMARK 620 4 HOH A 675 O 90.4 172.9 95.2 REMARK 620 5 HOH B 579 O 173.1 82.3 86.6 93.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 523 O REMARK 620 2 ASP B 25 OD1 172.6 REMARK 620 3 HOH B 631 O 94.1 82.2 REMARK 620 4 HOH B 649 O 86.1 97.6 179.6 REMARK 620 5 HOH B 660 O 86.9 86.8 91.1 89.2 REMARK 620 N 1 2 3 4 DBREF 7YEO A 1 398 UNP O42851 YFHE_SCHPO 1 398 DBREF 7YEO B 1 398 UNP O42851 YFHE_SCHPO 1 398 SEQRES 1 A 398 MET THR HIS THR PRO SER PHE ASP LEU SER ASP ILE LYS SEQRES 2 A 398 SER THR LEU SER THR ASN VAL LEU HIS ALA ASP ASP ALA SEQRES 3 A 398 TYR ALA LEU GLU ASN ASP VAL ALA PRO PRO ILE HIS ILE SEQRES 4 A 398 SER THR THR TYR THR TYR PRO GLY THR PRO ASP THR LEU SEQRES 5 A 398 GLN PRO PHE THR LYS LEU ALA GLU GLU ASP PHE PRO TYR SEQRES 6 A 398 TYR ALA ARG ILE SER GLY ASN ASN VAL ASP ARG ALA GLU SEQRES 7 A 398 ALA SER LEU SER SER VAL LEU GLY ALA PRO SER VAL VAL SEQRES 8 A 398 TYR SER SER GLY LEU ALA ALA ILE TYR GLY LEU LEU SER SEQRES 9 A 398 TYR LEU ASN PRO LYS HIS ILE ALA VAL HIS LYS PRO GLY SEQRES 10 A 398 PHE GLY GLY TYR SER GLY THR ILE GLN ILE ILE ALA ARG SEQRES 11 A 398 ILE ASN ARG LEU THR GLY LEU GLU THR SER PHE ILE ASP SEQRES 12 A 398 GLY LYS CYS ASP ALA ILE GLY GLU GLY ASP VAL ILE TRP SEQRES 13 A 398 LEU GLU THR PRO LEU ASN PRO LEU GLY ILE ALA PHE ASP SEQRES 14 A 398 ILE PRO PHE TYR LYS GLU LEU ALA LYS LYS LYS GLY ALA SEQRES 15 A 398 ILE LEU VAL VAL ASP SER THR PHE ALA PRO PRO PRO ILE SEQRES 16 A 398 GLN ASP ALA LEU VAL LEU GLY ALA ASP TYR VAL VAL HIS SEQRES 17 A 398 SER ALA THR LYS TYR LEU ALA GLY HIS SER ASP VAL LEU SEQRES 18 A 398 ALA GLY VAL THR ALA SER LYS ASP ARG SER LYS ILE LEU SEQRES 19 A 398 ASP LEU LYS ALA ASP ARG ALA TYR LEU GLY THR ILE LEU SEQRES 20 A 398 HIS PRO GLN GLN ALA PHE LEU LEU LEU ARG SER LEU ARG SEQRES 21 A 398 THR PHE PRO LEU ARG ILE ALA LYS HIS SER GLU ASN GLY SEQRES 22 A 398 PHE LEU VAL ALA GLN HIS LEU ASN LYS LEU ALA THR ASP SEQRES 23 A 398 GLU GLN PHE ALA THR SER LEU GLY ILE ASP SER SER LEU SEQRES 24 A 398 ILE LEU GLU VAL TYR HIS ASN SER LEU GLN THR LYS GLU SEQRES 25 A 398 PHE VAL ALA LYS ASN LEU THR GLY GLY HIS ALA SER CYS SEQRES 26 A 398 PHE SER VAL LEU LEU LYS SER ASP THR VAL ALA LYS HIS SEQRES 27 A 398 LEU CYS CYS GLU LEU LYS TYR PHE HIS HIS ALA THR SER SEQRES 28 A 398 LEU GLY SER VAL GLU SER LEU ILE GLU TRP ARG ARG MET SEQRES 29 A 398 THR ASP SER LYS ILE ASP PRO ARG LEU VAL ARG LEU SER SEQRES 30 A 398 ILE GLY ILE GLU ASP ALA ALA ASP LEU ILE ALA ASP LEU SEQRES 31 A 398 ASN ARG VAL PHE ALA SER LEU SER SEQRES 1 B 398 MET THR HIS THR PRO SER PHE ASP LEU SER ASP ILE LYS SEQRES 2 B 398 SER THR LEU SER THR ASN VAL LEU HIS ALA ASP ASP ALA SEQRES 3 B 398 TYR ALA LEU GLU ASN ASP VAL ALA PRO PRO ILE HIS ILE SEQRES 4 B 398 SER THR THR TYR THR TYR PRO GLY THR PRO ASP THR LEU SEQRES 5 B 398 GLN PRO PHE THR LYS LEU ALA GLU GLU ASP PHE PRO TYR SEQRES 6 B 398 TYR ALA ARG ILE SER GLY ASN ASN VAL ASP ARG ALA GLU SEQRES 7 B 398 ALA SER LEU SER SER VAL LEU GLY ALA PRO SER VAL VAL SEQRES 8 B 398 TYR SER SER GLY LEU ALA ALA ILE TYR GLY LEU LEU SER SEQRES 9 B 398 TYR LEU ASN PRO LYS HIS ILE ALA VAL HIS LYS PRO GLY SEQRES 10 B 398 PHE GLY GLY TYR SER GLY THR ILE GLN ILE ILE ALA ARG SEQRES 11 B 398 ILE ASN ARG LEU THR GLY LEU GLU THR SER PHE ILE ASP SEQRES 12 B 398 GLY LYS CYS ASP ALA ILE GLY GLU GLY ASP VAL ILE TRP SEQRES 13 B 398 LEU GLU THR PRO LEU ASN PRO LEU GLY ILE ALA PHE ASP SEQRES 14 B 398 ILE PRO PHE TYR LYS GLU LEU ALA LYS LYS LYS GLY ALA SEQRES 15 B 398 ILE LEU VAL VAL ASP SER THR PHE ALA PRO PRO PRO ILE SEQRES 16 B 398 GLN ASP ALA LEU VAL LEU GLY ALA ASP TYR VAL VAL HIS SEQRES 17 B 398 SER ALA THR LYS TYR LEU ALA GLY HIS SER ASP VAL LEU SEQRES 18 B 398 ALA GLY VAL THR ALA SER LYS ASP ARG SER LYS ILE LEU SEQRES 19 B 398 ASP LEU LYS ALA ASP ARG ALA TYR LEU GLY THR ILE LEU SEQRES 20 B 398 HIS PRO GLN GLN ALA PHE LEU LEU LEU ARG SER LEU ARG SEQRES 21 B 398 THR PHE PRO LEU ARG ILE ALA LYS HIS SER GLU ASN GLY SEQRES 22 B 398 PHE LEU VAL ALA GLN HIS LEU ASN LYS LEU ALA THR ASP SEQRES 23 B 398 GLU GLN PHE ALA THR SER LEU GLY ILE ASP SER SER LEU SEQRES 24 B 398 ILE LEU GLU VAL TYR HIS ASN SER LEU GLN THR LYS GLU SEQRES 25 B 398 PHE VAL ALA LYS ASN LEU THR GLY GLY HIS ALA SER CYS SEQRES 26 B 398 PHE SER VAL LEU LEU LYS SER ASP THR VAL ALA LYS HIS SEQRES 27 B 398 LEU CYS CYS GLU LEU LYS TYR PHE HIS HIS ALA THR SER SEQRES 28 B 398 LEU GLY SER VAL GLU SER LEU ILE GLU TRP ARG ARG MET SEQRES 29 B 398 THR ASP SER LYS ILE ASP PRO ARG LEU VAL ARG LEU SER SEQRES 30 B 398 ILE GLY ILE GLU ASP ALA ALA ASP LEU ILE ALA ASP LEU SEQRES 31 B 398 ASN ARG VAL PHE ALA SER LEU SER HET PLP A 401 15 HET MG A 402 1 HET PLP B 401 15 HET MG B 402 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *489(H2 O) HELIX 1 AA1 THR A 15 ALA A 23 1 9 HELIX 2 AA2 ASP A 24 ALA A 28 5 5 HELIX 3 AA3 GLY A 71 GLY A 86 1 16 HELIX 4 AA4 SER A 94 ASN A 107 1 14 HELIX 5 AA5 TYR A 121 GLY A 136 1 16 HELIX 6 AA6 ASP A 169 GLY A 181 1 13 HELIX 7 AA7 ASP A 229 GLY A 244 1 16 HELIX 8 AA8 HIS A 248 ASP A 286 1 39 HELIX 9 AA9 ASP A 286 LEU A 293 1 8 HELIX 10 AB1 ASP A 296 SER A 298 5 3 HELIX 11 AB2 HIS A 305 GLN A 309 5 5 HELIX 12 AB3 GLU A 312 LEU A 318 1 7 HELIX 13 AB4 SER A 332 LEU A 343 1 12 HELIX 14 AB5 ARG A 363 THR A 365 5 3 HELIX 15 AB6 ASP A 382 LEU A 397 1 16 HELIX 16 AB7 THR B 15 ALA B 23 1 9 HELIX 17 AB8 ASP B 24 ALA B 28 5 5 HELIX 18 AB9 GLY B 71 GLY B 86 1 16 HELIX 19 AC1 SER B 94 ASN B 107 1 14 HELIX 20 AC2 TYR B 121 GLY B 136 1 16 HELIX 21 AC3 ASP B 169 GLY B 181 1 13 HELIX 22 AC4 ASP B 229 GLY B 244 1 16 HELIX 23 AC5 HIS B 248 ASP B 286 1 39 HELIX 24 AC6 ASP B 286 LEU B 293 1 8 HELIX 25 AC7 ASP B 296 SER B 298 5 3 HELIX 26 AC8 HIS B 305 GLN B 309 5 5 HELIX 27 AC9 GLU B 312 LEU B 318 1 7 HELIX 28 AD1 SER B 332 LEU B 343 1 12 HELIX 29 AD2 ARG B 363 THR B 365 5 3 HELIX 30 AD3 ASP B 382 LEU B 397 1 16 SHEET 1 AA1 7 SER A 89 TYR A 92 0 SHEET 2 AA1 7 GLY A 223 ALA A 226 -1 O GLY A 223 N TYR A 92 SHEET 3 AA1 7 TYR A 205 SER A 209 -1 N HIS A 208 O VAL A 224 SHEET 4 AA1 7 ILE A 183 ASP A 187 1 N VAL A 186 O TYR A 205 SHEET 5 AA1 7 VAL A 154 GLU A 158 1 N ILE A 155 O ILE A 183 SHEET 6 AA1 7 HIS A 110 VAL A 113 1 N ALA A 112 O TRP A 156 SHEET 7 AA1 7 GLU A 138 PHE A 141 1 O GLU A 138 N ILE A 111 SHEET 1 AA2 5 ILE A 300 VAL A 303 0 SHEET 2 AA2 5 CYS A 325 LEU A 330 -1 O LEU A 329 N GLU A 302 SHEET 3 AA2 5 LEU A 373 SER A 377 -1 O LEU A 376 N PHE A 326 SHEET 4 AA2 5 SER A 357 TRP A 361 -1 N LEU A 358 O SER A 377 SHEET 5 AA2 5 PHE A 346 HIS A 348 1 N HIS A 347 O ILE A 359 SHEET 1 AA3 7 SER B 89 TYR B 92 0 SHEET 2 AA3 7 GLY B 223 ALA B 226 -1 O GLY B 223 N TYR B 92 SHEET 3 AA3 7 TYR B 205 SER B 209 -1 N HIS B 208 O VAL B 224 SHEET 4 AA3 7 ILE B 183 ASP B 187 1 N VAL B 186 O VAL B 207 SHEET 5 AA3 7 VAL B 154 GLU B 158 1 N LEU B 157 O VAL B 185 SHEET 6 AA3 7 HIS B 110 VAL B 113 1 N ALA B 112 O TRP B 156 SHEET 7 AA3 7 GLU B 138 PHE B 141 1 O SER B 140 N ILE B 111 SHEET 1 AA4 5 ILE B 300 VAL B 303 0 SHEET 2 AA4 5 CYS B 325 LEU B 330 -1 O LEU B 329 N GLU B 302 SHEET 3 AA4 5 LEU B 373 SER B 377 -1 O LEU B 376 N PHE B 326 SHEET 4 AA4 5 SER B 357 TRP B 361 -1 N LEU B 358 O SER B 377 SHEET 5 AA4 5 PHE B 346 HIS B 348 1 N HIS B 347 O ILE B 359 LINK NZ LYS A 212 C4A PLP A 401 1555 1555 1.56 LINK NZ LYS B 212 C4A PLP B 401 1555 1555 1.39 LINK OD1 ASP A 25 MG MG B 402 1555 1555 2.12 LINK MG MG A 402 O HOH A 523 1555 1555 2.13 LINK MG MG A 402 OD1 ASP B 25 1555 1555 2.05 LINK MG MG A 402 O HOH B 631 1555 1555 2.27 LINK MG MG A 402 O HOH B 649 1555 1555 1.97 LINK MG MG A 402 O HOH B 660 1555 1555 2.17 LINK O HOH A 649 MG MG B 402 1555 1555 2.09 LINK O HOH A 660 MG MG B 402 1555 1555 2.09 LINK O HOH A 675 MG MG B 402 1555 1555 2.05 LINK MG MG B 402 O HOH B 579 1555 1555 2.17 CISPEP 1 THR A 159 PRO A 160 0 -3.79 CISPEP 2 ASN A 162 PRO A 163 0 12.90 CISPEP 3 PRO A 193 PRO A 194 0 9.53 CISPEP 4 THR B 159 PRO B 160 0 -5.57 CISPEP 5 ASN B 162 PRO B 163 0 11.82 CISPEP 6 PRO B 193 PRO B 194 0 12.86 CRYST1 117.390 106.820 82.810 90.00 128.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008519 0.000000 0.006655 0.00000 SCALE2 0.000000 0.009362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015324 0.00000